Wall clock time and date at job start Mon Mar 30 2020 00:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46497 * 120.00066 * 2 1 4 4 C 1.53006 * 109.47139 * 270.00248 * 3 2 1 5 5 N 1.46497 * 109.47139 * 179.97438 * 4 3 2 6 6 C 1.36938 * 119.99823 * 179.97438 * 5 4 3 7 7 H 1.08001 * 120.00340 * 0.02562 * 6 5 4 8 8 C 1.38815 * 120.00177 * 180.02562 * 6 5 4 9 9 N 1.31623 * 119.99919 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00244 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.46968 * 59.99697 * 10 8 6 12 12 H 1.48502 * 109.47171 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.46895 * 299.99776 * 10 8 6 14 14 C 1.34773 * 120.00081 * 180.02562 * 2 1 3 15 15 O 1.21685 * 120.00345 * 184.62636 * 14 2 1 16 16 C 1.46775 * 120.00136 * 4.61624 * 14 2 1 17 17 C 1.41491 * 126.51857 * 326.45551 * 16 14 2 18 18 N 1.30279 * 108.19204 * 179.97438 * 17 16 14 19 19 N 1.39905 * 109.23206 * 0.02562 * 18 17 16 20 20 C 1.46496 * 125.74764 * 180.02562 * 19 18 17 21 21 C 1.34846 * 108.50173 * 359.97438 * 19 18 17 22 22 N 1.38014 * 126.44010 * 180.25957 * 21 19 18 23 23 H 1.09004 * 109.46961 * 275.66598 * 1 2 3 24 24 H 1.08996 * 109.47480 * 35.66163 * 1 2 3 25 25 H 1.09004 * 109.47460 * 155.66681 * 1 2 3 26 26 H 1.09000 * 109.47255 * 29.99742 * 3 2 1 27 27 H 1.09005 * 109.47298 * 150.00272 * 3 2 1 28 28 H 1.09000 * 109.46633 * 299.99874 * 4 3 2 29 29 H 1.08994 * 109.47291 * 59.99535 * 4 3 2 30 30 H 0.96995 * 120.00109 * 0.02562 * 5 4 3 31 31 H 0.96993 * 120.00402 * 180.02562 * 9 8 6 32 32 H 1.07999 * 125.90173 * 359.96292 * 17 16 14 33 33 H 1.09002 * 109.47047 * 269.97602 * 20 19 18 34 34 H 1.09004 * 109.47151 * 29.97377 * 20 19 18 35 35 H 1.08991 * 109.47157 * 149.97693 * 20 19 18 36 36 H 0.97005 * 119.99843 * 179.68769 * 22 21 19 37 37 H 0.96999 * 120.00443 * 359.68969 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4426 5 7 3.1844 2.9794 -1.4426 6 6 3.5270 3.5722 -2.6285 7 1 3.2573 3.1044 -3.5638 8 6 4.2211 4.7743 -2.6286 9 7 4.5494 5.3448 -1.4887 10 14 4.6879 5.5833 -4.2463 11 1 3.4583 5.8788 -5.0249 12 1 5.4173 6.8480 -3.9750 13 1 5.5585 4.6664 -5.0251 14 6 2.1388 -1.1672 -0.0005 15 8 3.3527 -1.1690 0.0845 16 6 1.4086 -2.4362 -0.1034 17 6 0.1264 -2.7151 0.4260 18 7 -0.1781 -3.9460 0.1269 19 7 0.8729 -4.5176 -0.5983 20 6 0.9097 -5.8874 -1.1165 21 6 1.8459 -3.5950 -0.7409 22 7 3.0468 -3.7650 -1.3995 23 1 -0.3633 0.1015 1.0227 24 1 -0.3634 0.8349 -0.5991 25 1 -0.3634 -0.9364 -0.4234 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5138 28 1 3.0415 0.9507 -1.9563 29 1 1.5001 1.8407 -1.9564 30 1 3.4269 3.3994 -0.6026 31 1 5.0340 6.1850 -1.4887 32 1 -0.4926 -2.0267 0.9820 33 1 1.3499 -6.5470 -0.3687 34 1 -0.1044 -6.2182 -1.3410 35 1 1.5108 -5.9160 -2.0252 36 1 3.6807 -3.0324 -1.4492 37 1 3.2570 -4.6171 -1.8126 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481221942.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:55 Heat of formation + Delta-G solvation = 69.410936 kcal Electronic energy + Delta-G solvation = -20100.532479 eV Core-core repulsion = 16915.591091 eV Total energy + Delta-G solvation = -3184.941388 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.49729 -39.06395 -35.83433 -35.02986 -34.19369 -33.24849 -31.32990 -29.12002 -28.21431 -26.95109 -26.27302 -23.80287 -22.20029 -21.45973 -20.78321 -19.24508 -17.71699 -17.10467 -16.96648 -16.33166 -15.96727 -15.47950 -15.05829 -14.57729 -14.33797 -13.84916 -13.55406 -13.31469 -13.17709 -13.01979 -12.97210 -12.68361 -12.62059 -11.89775 -11.32658 -11.17025 -10.99207 -10.90483 -10.83721 -10.58384 -10.10010 -9.71761 -9.52886 -9.12123 -8.81366 -8.34913 -7.90348 -6.87065 -5.70851 -2.99696 1.78741 2.05311 2.24287 3.25128 3.48075 3.48172 3.51848 3.53426 3.60118 4.23828 4.65714 4.73926 4.79254 5.01718 5.07581 5.25947 5.31067 5.36368 5.50754 5.60337 5.79604 5.82751 5.97812 6.12319 6.15136 6.25964 6.41324 6.71575 6.86418 7.03753 7.10044 7.23130 7.64830 7.74473 7.77648 8.47650 8.57440 9.58536 10.16015 10.51255 11.52128 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.032922 B = 0.003717 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.292140 B = 7531.693164 C = 7905.171226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.607 5.607 3 C 0.109 3.891 4 C 0.144 3.856 5 N -0.730 5.730 6 C -0.237 4.237 7 H 0.069 0.931 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.909 3.091 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.599 3.401 15 O -0.555 6.555 16 C -0.364 4.364 17 C 0.108 3.892 18 N -0.311 5.311 19 N -0.403 5.403 20 C 0.103 3.897 21 C 0.428 3.572 22 N -0.833 5.833 23 H 0.055 0.945 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.020 0.980 29 H 0.017 0.983 30 H 0.384 0.616 31 H 0.256 0.744 32 H 0.193 0.807 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.430 0.570 37 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.000 -22.085 2.566 24.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.339 5.339 3 C -0.013 4.013 4 C 0.015 3.985 5 N -0.375 5.375 6 C -0.369 4.369 7 H 0.087 0.913 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.389 3.611 15 O -0.434 6.434 16 C -0.383 4.383 17 C -0.081 4.081 18 N -0.130 5.130 19 N -0.191 5.191 20 C -0.039 4.039 21 C 0.194 3.806 22 N -0.381 5.381 23 H 0.073 0.927 24 H 0.089 0.911 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.104 0.896 28 H 0.038 0.962 29 H 0.035 0.965 30 H 0.218 0.782 31 H 0.065 0.935 32 H 0.210 0.790 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.265 0.735 37 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -10.266 -23.071 2.517 25.377 hybrid contribution 1.197 1.143 -0.954 1.911 sum -9.068 -21.927 1.562 23.780 Atomic orbital electron populations 1.22130 0.80165 1.03718 1.01406 1.47500 1.06716 1.05943 1.73731 1.21660 0.97560 0.83208 0.98889 1.20903 0.94965 0.89202 0.93413 1.42212 1.67106 1.21661 1.06534 1.19168 1.29347 1.02356 0.85993 0.91310 1.24742 1.01351 0.98061 0.96869 1.69651 1.45085 1.19574 1.23959 0.86245 0.78106 0.78650 0.83051 1.21294 1.21663 1.21292 1.17051 0.86248 0.82326 0.75477 1.90763 1.13805 1.87379 1.51415 1.19274 1.00689 0.95517 1.22856 1.24003 0.93848 0.93259 0.96987 1.77107 1.08739 1.10394 1.16759 1.48113 1.12993 1.11028 1.46978 1.21779 1.04862 0.78347 0.98874 1.17957 0.83661 0.88516 0.90481 1.41638 1.16843 1.19092 1.60558 0.92684 0.91116 0.90068 0.90604 0.89619 0.96161 0.96483 0.78247 0.93460 0.79046 0.90837 0.88794 0.90180 0.73519 0.77177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 9.11 59.84 0.55 1.31 16 2 N -0.61 -9.35 2.87 -183.09 -0.53 -9.87 16 3 C 0.11 1.98 5.58 -4.04 -0.02 1.96 16 4 C 0.14 3.15 6.58 -4.04 -0.03 3.12 16 5 N -0.73 -19.51 5.60 -59.91 -0.34 -19.84 16 6 C -0.24 -6.92 9.99 -15.06 -0.15 -7.08 16 7 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 8 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 9 N -0.93 -28.95 13.06 55.49 0.72 -28.22 16 10 Si 0.91 22.93 29.55 -169.99 -5.02 17.90 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 14 C 0.60 9.95 7.52 -12.81 -0.10 9.85 16 15 O -0.55 -11.02 15.49 5.20 0.08 -10.94 16 16 C -0.36 -5.02 5.53 -104.81 -0.58 -5.60 16 17 C 0.11 1.25 9.55 -16.97 -0.16 1.09 16 18 N -0.31 -3.74 12.47 30.88 0.38 -3.35 16 19 N -0.40 -4.23 4.00 -66.82 -0.27 -4.50 16 20 C 0.10 0.59 11.25 59.84 0.67 1.26 16 21 C 0.43 5.14 7.97 -153.78 -1.23 3.92 16 22 N -0.83 -8.04 9.03 31.40 0.28 -7.76 16 23 H 0.05 0.49 7.89 -51.93 -0.41 0.08 16 24 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 25 H 0.08 0.82 4.73 -51.93 -0.25 0.57 16 26 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 27 H 0.09 1.71 7.36 -51.93 -0.38 1.33 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.38 10.63 7.67 -40.82 -0.31 10.32 16 31 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 32 H 0.19 1.66 6.22 -52.49 -0.33 1.33 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.27 7.45 -51.93 -0.39 -0.11 16 36 H 0.43 4.90 7.73 -40.82 -0.32 4.59 16 37 H 0.40 2.37 8.04 -40.82 -0.33 2.04 16 LS Contribution 313.97 15.07 4.73 4.73 Total: -1.00 -36.85 313.97 -5.87 -42.72 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -4.78 Total: 9.81 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: -1.14 Total: 9.32 kcal Atomic # 7 Polarization: -73.81 SS G_CDS: 0.26 Total: -73.55 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.08 Total: -10.94 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -36.85 -5.87 -42.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481221942.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.134 kcal (2) G-P(sol) polarization free energy of solvation -36.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds