Wall clock time and date at job start Mon Mar 30 2020 00:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46497 * 120.00066 * 2 1 4 4 C 1.53006 * 109.47139 * 270.00248 * 3 2 1 5 5 N 1.46497 * 109.47139 * 179.97438 * 4 3 2 6 6 C 1.36938 * 119.99823 * 179.97438 * 5 4 3 7 7 H 1.08001 * 120.00340 * 0.02562 * 6 5 4 8 8 C 1.38815 * 120.00177 * 180.02562 * 6 5 4 9 9 N 1.31623 * 119.99919 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00244 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.46968 * 59.99697 * 10 8 6 12 12 H 1.48502 * 109.47171 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.46895 * 299.99776 * 10 8 6 14 14 C 1.34773 * 120.00081 * 180.02562 * 2 1 3 15 15 O 1.21685 * 120.00345 * 184.62636 * 14 2 1 16 16 C 1.46775 * 120.00136 * 4.61624 * 14 2 1 17 17 C 1.41491 * 126.51857 * 326.45551 * 16 14 2 18 18 N 1.30279 * 108.19204 * 179.97438 * 17 16 14 19 19 N 1.39905 * 109.23206 * 0.02562 * 18 17 16 20 20 C 1.46496 * 125.74764 * 180.02562 * 19 18 17 21 21 C 1.34846 * 108.50173 * 359.97438 * 19 18 17 22 22 N 1.38014 * 126.44010 * 180.25957 * 21 19 18 23 23 H 1.09004 * 109.46961 * 275.66598 * 1 2 3 24 24 H 1.08996 * 109.47480 * 35.66163 * 1 2 3 25 25 H 1.09004 * 109.47460 * 155.66681 * 1 2 3 26 26 H 1.09000 * 109.47255 * 29.99742 * 3 2 1 27 27 H 1.09005 * 109.47298 * 150.00272 * 3 2 1 28 28 H 1.09000 * 109.46633 * 299.99874 * 4 3 2 29 29 H 1.08994 * 109.47291 * 59.99535 * 4 3 2 30 30 H 0.96995 * 120.00109 * 0.02562 * 5 4 3 31 31 H 0.96993 * 120.00402 * 180.02562 * 9 8 6 32 32 H 1.07999 * 125.90173 * 359.96292 * 17 16 14 33 33 H 1.09002 * 109.47047 * 269.97602 * 20 19 18 34 34 H 1.09004 * 109.47151 * 29.97377 * 20 19 18 35 35 H 1.08991 * 109.47157 * 149.97693 * 20 19 18 36 36 H 0.97005 * 119.99843 * 179.68769 * 22 21 19 37 37 H 0.96999 * 120.00443 * 359.68969 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4426 5 7 3.1844 2.9794 -1.4426 6 6 3.5270 3.5722 -2.6285 7 1 3.2573 3.1044 -3.5638 8 6 4.2211 4.7743 -2.6286 9 7 4.5494 5.3448 -1.4887 10 14 4.6879 5.5833 -4.2463 11 1 3.4583 5.8788 -5.0249 12 1 5.4173 6.8480 -3.9750 13 1 5.5585 4.6664 -5.0251 14 6 2.1388 -1.1672 -0.0005 15 8 3.3527 -1.1690 0.0845 16 6 1.4086 -2.4362 -0.1034 17 6 0.1264 -2.7151 0.4260 18 7 -0.1781 -3.9460 0.1269 19 7 0.8729 -4.5176 -0.5983 20 6 0.9097 -5.8874 -1.1165 21 6 1.8459 -3.5950 -0.7409 22 7 3.0468 -3.7650 -1.3995 23 1 -0.3633 0.1015 1.0227 24 1 -0.3634 0.8349 -0.5991 25 1 -0.3634 -0.9364 -0.4234 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5138 28 1 3.0415 0.9507 -1.9563 29 1 1.5001 1.8407 -1.9564 30 1 3.4269 3.3994 -0.6026 31 1 5.0340 6.1850 -1.4887 32 1 -0.4926 -2.0267 0.9820 33 1 1.3499 -6.5470 -0.3687 34 1 -0.1044 -6.2182 -1.3410 35 1 1.5108 -5.9160 -2.0252 36 1 3.6807 -3.0324 -1.4492 37 1 3.2570 -4.6171 -1.8126 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481221942.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:54 Heat of formation + Delta-G solvation = 40.944625 kcal Electronic energy + Delta-G solvation = -20101.766871 eV Core-core repulsion = 16915.591091 eV Total energy + Delta-G solvation = -3186.175780 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.38775 -40.30065 -37.30580 -36.26224 -35.62192 -34.12076 -33.24736 -30.46298 -29.36077 -27.79238 -27.48722 -25.63620 -23.65901 -22.66840 -21.82563 -20.36841 -19.20528 -18.53442 -18.02694 -17.37786 -16.94809 -16.78005 -16.40378 -16.03459 -15.56702 -15.15632 -15.10532 -14.93971 -14.46970 -14.21518 -13.79175 -13.61270 -13.50903 -13.05539 -12.89943 -12.79135 -12.68683 -12.30378 -12.16875 -12.11664 -11.92352 -11.84549 -10.95700 -10.81265 -9.92470 -9.62048 -9.05142 -8.83639 -7.96233 -5.27133 0.86467 1.28026 1.30529 1.46780 1.51028 1.57229 2.05362 2.44787 2.57885 2.75457 3.36588 3.54389 3.97556 4.05136 4.12258 4.27590 4.29852 4.39904 4.43436 4.51567 4.55488 4.61912 4.67444 4.78133 4.99877 5.06418 5.15413 5.36753 5.44194 5.56749 5.69051 6.19745 6.25116 6.50235 6.55164 6.87061 7.30948 7.33167 8.03310 8.29234 9.27031 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.032922 B = 0.003717 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.292140 B = 7531.693164 C = 7905.171226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.606 5.606 3 C 0.124 3.876 4 C 0.151 3.849 5 N -0.743 5.743 6 C -0.252 4.252 7 H 0.073 0.927 8 C -0.073 4.073 9 N -0.968 5.968 10 Si 0.979 3.021 11 H -0.274 1.274 12 H -0.292 1.292 13 H -0.279 1.279 14 C 0.593 3.407 15 O -0.600 6.600 16 C -0.393 4.393 17 C 0.114 3.886 18 N -0.324 5.324 19 N -0.399 5.399 20 C 0.091 3.909 21 C 0.424 3.576 22 N -0.823 5.823 23 H 0.084 0.916 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.061 0.939 28 H 0.000 1.000 29 H 0.027 0.973 30 H 0.376 0.624 31 H 0.254 0.746 32 H 0.218 0.782 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.423 0.577 37 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.398 -23.334 1.767 26.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.337 5.337 3 C 0.001 3.999 4 C 0.023 3.977 5 N -0.386 5.386 6 C -0.384 4.384 7 H 0.091 0.909 8 C -0.265 4.265 9 N -0.618 5.618 10 Si 0.806 3.194 11 H -0.200 1.200 12 H -0.218 1.218 13 H -0.205 1.205 14 C 0.385 3.615 15 O -0.482 6.482 16 C -0.413 4.413 17 C -0.075 4.075 18 N -0.143 5.143 19 N -0.188 5.188 20 C -0.049 4.049 21 C 0.188 3.812 22 N -0.372 5.372 23 H 0.102 0.898 24 H 0.091 0.909 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.080 0.920 28 H 0.018 0.982 29 H 0.045 0.955 30 H 0.208 0.792 31 H 0.062 0.938 32 H 0.234 0.766 33 H 0.105 0.895 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.256 0.744 37 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -11.726 -24.399 1.694 27.123 hybrid contribution 1.609 1.405 -0.714 2.253 sum -10.117 -22.993 0.980 25.140 Atomic orbital electron populations 1.22411 0.77276 1.04566 1.03510 1.47554 1.08397 1.04550 1.73245 1.21298 0.97432 0.85081 0.96134 1.20935 0.94125 0.86738 0.95897 1.42392 1.67610 1.23003 1.05594 1.19565 1.29190 1.02701 0.86951 0.90926 1.25632 1.01624 0.98783 1.00495 1.69813 1.45960 1.19870 1.26184 0.85147 0.78039 0.77317 0.78850 1.19986 1.21762 1.20529 1.17520 0.85906 0.83416 0.74621 1.90728 1.15823 1.88075 1.53588 1.19203 1.01916 0.94959 1.25211 1.24337 0.93110 0.93484 0.96557 1.77056 1.09567 1.10565 1.17149 1.48416 1.12007 1.12055 1.46310 1.22197 1.06256 0.76186 1.00239 1.18083 0.84355 0.88614 0.90197 1.41618 1.15909 1.19711 1.59945 0.89759 0.90864 0.88764 0.88753 0.92028 0.98195 0.95486 0.79221 0.93760 0.76612 0.89458 0.87796 0.87783 0.74429 0.75134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.28 9.11 127.77 1.16 2.45 16 2 N -0.61 -18.33 2.87 -851.39 -2.45 -20.78 16 3 C 0.12 4.54 5.58 86.38 0.48 5.02 16 4 C 0.15 6.67 6.58 86.38 0.57 7.24 16 5 N -0.74 -40.29 5.60 -343.45 -1.92 -42.22 16 6 C -0.25 -14.81 9.99 84.03 0.84 -13.97 16 7 H 0.07 4.11 7.83 -2.91 -0.02 4.08 16 8 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 9 N -0.97 -60.68 13.06 21.65 0.28 -60.39 16 10 Si 0.98 47.08 29.55 68.60 2.03 49.11 16 11 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 13 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 14 C 0.59 19.78 7.52 86.48 0.65 20.43 16 15 O -0.60 -24.64 15.49 -4.30 -0.07 -24.71 16 16 C -0.39 -10.52 5.53 -19.99 -0.11 -10.63 16 17 C 0.11 2.44 9.55 85.72 0.82 3.26 16 18 N -0.32 -7.14 12.47 -56.23 -0.70 -7.84 16 19 N -0.40 -7.59 4.00 -365.32 -1.46 -9.05 16 20 C 0.09 0.80 11.25 127.77 1.44 2.23 16 21 C 0.42 9.70 7.97 132.69 1.06 10.76 16 22 N -0.82 -15.20 9.03 -54.57 -0.49 -15.69 16 23 H 0.08 1.23 7.89 -2.38 -0.02 1.21 16 24 H 0.07 1.45 8.11 -2.39 -0.02 1.43 16 25 H 0.09 1.67 4.73 -2.39 -0.01 1.66 16 26 H 0.09 3.08 8.07 -2.39 -0.02 3.06 16 27 H 0.06 2.55 7.36 -2.38 -0.02 2.54 16 28 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 29 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.38 21.31 7.67 -92.71 -0.71 20.60 16 31 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 32 H 0.22 3.16 6.22 -2.91 -0.02 3.14 16 33 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.10 0.40 7.45 -2.39 -0.02 0.38 16 36 H 0.42 9.70 7.73 -92.70 -0.72 8.98 16 37 H 0.42 4.28 8.04 -92.71 -0.75 3.53 16 Total: -1.00 -80.08 313.97 1.55 -78.53 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: -1.05 Total: 30.10 kcal Atomic # 6 Polarization: 15.56 SS G_CDS: 7.38 Total: 22.94 kcal Atomic # 7 Polarization: -149.23 SS G_CDS: -6.74 Total: -155.97 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.07 Total: -24.71 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -80.08 1.55 -78.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481221942.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.474 kcal (2) G-P(sol) polarization free energy of solvation -80.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds