Wall clock time and date at job start Mon Mar 30 2020 00:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46741 * 2 1 4 4 C 1.52997 * 109.47236 * 239.99889 * 2 1 3 5 5 N 1.46505 * 109.47212 * 64.99775 * 4 2 1 6 6 C 1.36936 * 119.99992 * 179.97438 * 5 4 2 7 7 H 1.08006 * 119.99834 * 0.02562 * 6 5 4 8 8 C 1.38801 * 120.00093 * 180.02562 * 6 5 4 9 9 N 1.31619 * 120.00176 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00265 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46725 * 59.99976 * 10 8 6 12 12 H 1.48498 * 109.47172 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46920 * 300.00189 * 10 8 6 14 14 C 1.52997 * 109.47024 * 119.99412 * 2 1 3 15 15 N 1.46501 * 109.47600 * 295.00248 * 14 2 1 16 16 C 1.34773 * 120.00280 * 179.97438 * 15 14 2 17 17 O 1.21558 * 120.00014 * 0.02562 * 16 15 14 18 18 C 1.47865 * 120.00065 * 179.97438 * 16 15 14 19 19 N 1.34553 * 126.04727 * 0.03307 * 18 16 15 20 20 C 1.30871 * 107.26875 * 179.97438 * 19 18 16 21 21 N 1.34584 * 107.62516 * 359.97438 * 20 19 18 22 22 C 1.46504 * 125.75202 * 180.02562 * 21 20 19 23 23 N 1.28855 * 108.50538 * 359.72797 * 21 20 19 24 24 H 1.09000 * 109.47403 * 300.00135 * 1 2 3 25 25 H 1.09001 * 109.46917 * 60.00677 * 1 2 3 26 26 H 1.09004 * 109.46741 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 304.99767 * 4 2 1 28 28 H 1.09001 * 109.46832 * 184.99958 * 4 2 1 29 29 H 0.96996 * 119.99606 * 0.02562 * 5 4 2 30 30 H 0.97001 * 120.00803 * 179.97438 * 9 8 6 31 31 H 1.09003 * 109.46810 * 55.00222 * 14 2 1 32 32 H 1.08998 * 109.47247 * 175.00091 * 14 2 1 33 33 H 0.97003 * 119.99573 * 359.97438 * 15 14 2 34 34 H 1.07999 * 126.18698 * 180.02562 * 20 19 18 35 35 H 1.08995 * 109.47093 * 89.99520 * 22 21 20 36 36 H 1.08995 * 109.47453 * 209.99984 * 22 21 20 37 37 H 1.08999 * 109.46755 * 329.99901 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4424 6 6 2.0020 -0.4203 -3.6855 7 1 2.5631 -1.3377 -3.7863 8 6 1.6353 0.2967 -4.8160 9 7 0.9519 1.4149 -4.6931 10 14 2.1115 -0.3252 -6.5119 11 1 1.5180 -1.6687 -6.7310 12 1 1.6039 0.6140 -7.5441 13 1 3.5906 -0.4157 -6.6086 14 6 2.0400 -0.7211 1.2493 15 7 1.6524 0.0355 2.4424 16 6 1.9955 -0.4134 3.6660 17 8 2.6270 -1.4458 3.7797 18 6 1.6048 0.3506 4.8702 19 7 0.9093 1.5024 4.8861 20 6 0.7697 1.8547 6.1387 21 7 1.3776 0.9217 6.8946 22 6 1.4601 0.9258 8.3573 23 7 1.8694 0.0209 6.1155 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.6055 -1.7198 -1.2951 28 1 3.1264 -0.7994 -1.2055 29 1 1.1489 0.8593 -2.3517 30 1 0.6959 1.9162 -5.4830 31 1 1.6054 -1.7197 1.2952 32 1 3.1263 -0.7993 1.2057 33 1 1.1488 0.8596 2.3517 34 1 0.2584 2.7345 6.5005 35 1 0.6022 0.3959 8.7711 36 1 2.3789 0.4303 8.6708 37 1 1.4605 1.9543 8.7183 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482097117.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:20 Heat of formation + Delta-G solvation = 36.600500 kcal Electronic energy + Delta-G solvation = -19391.598832 eV Core-core repulsion = 16205.234677 eV Total energy + Delta-G solvation = -3186.364155 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.44115 -40.70683 -38.24371 -36.03818 -35.52612 -34.08394 -32.79075 -31.92090 -29.09720 -27.69886 -27.03635 -25.09937 -24.03272 -22.98715 -21.74270 -21.22261 -19.47127 -18.83766 -17.79468 -17.41590 -17.35145 -16.62939 -16.49970 -15.85143 -15.55148 -15.44628 -15.18568 -14.69856 -14.22334 -13.97277 -13.91724 -13.59706 -13.55752 -12.94484 -12.85664 -12.75819 -12.20562 -12.18459 -11.99291 -11.77434 -11.65393 -11.56300 -11.44993 -11.40651 -10.91383 -10.62945 -10.16412 -8.97291 -7.93120 -5.21534 0.27931 1.11619 1.29236 1.48841 1.51983 1.57980 2.04103 2.22699 2.58321 3.09499 3.40258 3.48729 3.70713 3.89838 3.96791 4.08632 4.33707 4.37626 4.42224 4.55076 4.70214 4.70582 4.73298 4.84611 4.94944 5.05857 5.14190 5.23772 5.32140 5.38135 5.47679 5.51794 5.65669 6.28797 6.31865 6.90643 7.08341 7.36040 8.11441 8.35870 9.30273 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.056872 B = 0.002826 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.216828 B = 9904.796178 C =10240.224749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 H 0.079 0.921 4 C 0.158 3.842 5 N -0.742 5.742 6 C -0.247 4.247 7 H 0.074 0.926 8 C -0.075 4.075 9 N -0.969 5.969 10 Si 0.974 3.026 11 H -0.278 1.278 12 H -0.294 1.294 13 H -0.279 1.279 14 C 0.138 3.862 15 N -0.691 5.691 16 C 0.610 3.390 17 O -0.563 6.563 18 C 0.117 3.883 19 N -0.510 5.510 20 C 0.207 3.793 21 N -0.300 5.300 22 C 0.074 3.926 23 N -0.285 5.285 24 H 0.070 0.930 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.024 0.976 28 H 0.022 0.978 29 H 0.376 0.624 30 H 0.252 0.748 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.418 0.582 34 H 0.282 0.718 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.498 3.506 29.352 29.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.113 4.113 3 H 0.097 0.903 4 C 0.031 3.969 5 N -0.385 5.385 6 C -0.378 4.378 7 H 0.092 0.908 8 C -0.268 4.268 9 N -0.619 5.619 10 Si 0.803 3.197 11 H -0.205 1.205 12 H -0.220 1.220 13 H -0.205 1.205 14 C 0.014 3.986 15 N -0.343 5.343 16 C 0.393 3.607 17 O -0.440 6.440 18 C -0.162 4.162 19 N -0.236 5.236 20 C -0.087 4.087 21 N -0.095 5.095 22 C -0.065 4.065 23 N -0.126 5.126 24 H 0.089 0.911 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.040 0.960 29 H 0.209 0.791 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.256 0.744 34 H 0.297 0.703 35 H 0.125 0.875 36 H 0.114 0.886 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.730 2.228 29.202 29.338 hybrid contribution -0.228 0.511 -0.967 1.117 sum -1.959 2.739 28.235 28.435 Atomic orbital electron populations 1.21729 0.93907 1.02034 1.01656 1.21332 0.97198 1.00135 0.92646 0.90308 1.20716 0.96679 0.94164 0.85378 1.42507 1.66828 1.27832 1.01337 1.19603 1.27877 1.05341 0.85029 0.90773 1.25557 1.01739 0.97911 1.01564 1.69801 1.45107 1.17840 1.29199 0.85206 0.77877 0.77158 0.79479 1.20450 1.22050 1.20474 1.21307 1.00159 0.95119 0.82032 1.45608 1.56375 1.28113 1.04205 1.16557 0.78990 0.83213 0.81950 1.90794 1.41452 1.25044 1.86687 1.23421 1.04933 0.95668 0.92202 1.71232 1.18567 1.11650 1.22164 1.27522 0.97985 0.98158 0.85050 1.47837 1.36059 1.14731 1.10893 1.22778 1.06282 1.08340 0.69062 1.74259 1.19586 1.16502 1.02273 0.91093 0.93605 0.92713 0.95764 0.95970 0.79089 0.93960 0.90926 0.91235 0.74399 0.70312 0.87452 0.88564 0.83737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.16 8.94 71.98 0.64 -3.52 16 2 C -0.09 -3.00 2.46 -10.79 -0.03 -3.03 16 3 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 4 C 0.16 6.39 5.65 86.38 0.49 6.88 16 5 N -0.74 -38.14 5.33 -343.45 -1.83 -39.97 16 6 C -0.25 -14.04 9.99 84.03 0.84 -13.20 16 7 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 8 C -0.08 -4.39 5.50 84.86 0.47 -3.93 16 9 N -0.97 -59.72 13.06 21.65 0.28 -59.44 16 10 Si 0.97 46.79 29.55 68.60 2.03 48.82 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 12 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 13 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 14 C 0.14 4.01 5.06 86.38 0.44 4.45 16 15 N -0.69 -19.04 5.28 -465.95 -2.46 -21.50 16 16 C 0.61 19.36 7.83 86.79 0.68 20.04 16 17 O -0.56 -21.72 17.09 -3.90 -0.07 -21.79 16 18 C 0.12 3.21 7.96 137.12 1.09 4.30 16 19 N -0.51 -10.98 11.09 -193.03 -2.14 -13.12 16 20 C 0.21 2.38 12.62 180.30 2.27 4.66 16 21 N -0.30 -4.03 3.72 -373.46 -1.39 -5.42 16 22 C 0.07 0.09 11.38 127.77 1.45 1.54 16 23 N -0.28 -7.15 12.08 -52.44 -0.63 -7.78 16 24 H 0.07 1.79 7.18 -2.39 -0.02 1.77 16 25 H 0.04 1.64 7.18 -2.39 -0.02 1.62 16 26 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.38 20.30 6.85 -92.71 -0.64 19.67 16 30 H 0.25 15.04 8.31 -92.71 -0.77 14.26 16 31 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.42 10.21 7.37 -92.71 -0.68 9.53 16 34 H 0.28 -0.42 8.06 -2.91 -0.02 -0.44 16 35 H 0.11 -0.16 8.14 -2.39 -0.02 -0.18 16 36 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.14 -1.01 8.14 -2.39 -0.02 -1.03 16 Total: -1.00 -82.08 321.96 1.91 -80.17 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -0.22 Total: 21.82 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: 8.35 Total: 18.21 kcal Atomic # 7 Polarization: -139.06 SS G_CDS: -8.17 Total: -147.23 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.07 Total: -21.79 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -82.08 1.91 -80.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482097117.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.770 kcal (2) G-P(sol) polarization free energy of solvation -82.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds