Wall clock time and date at job start Mon Mar 30 2020 00:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36933 * 119.99754 * 2 1 4 4 H 1.08002 * 119.99747 * 176.48472 * 3 2 1 5 5 C 1.38814 * 120.00026 * 356.48066 * 3 2 1 6 6 N 1.31613 * 120.00304 * 34.23779 * 5 3 2 7 7 Si 1.86799 * 119.99835 * 214.23544 * 5 3 2 8 8 H 1.48506 * 109.47269 * 94.99898 * 7 5 3 9 9 H 1.48499 * 109.47315 * 215.00135 * 7 5 3 10 10 H 1.48503 * 109.47284 * 335.00291 * 7 5 3 11 11 C 1.46495 * 119.99722 * 180.02562 * 2 1 3 12 12 C 1.53005 * 109.47046 * 269.99627 * 11 2 1 13 13 N 1.46493 * 109.47395 * 180.02562 * 12 11 2 14 14 C 1.46505 * 119.99988 * 270.00132 * 13 12 11 15 15 C 1.34770 * 120.00312 * 89.99771 * 13 12 11 16 16 O 1.21622 * 120.00056 * 0.36500 * 15 13 12 17 17 C 1.47236 * 120.00479 * 180.35991 * 15 13 12 18 18 C 1.37004 * 127.18689 * 349.16863 * 17 15 13 19 19 N 1.33319 * 106.37388 * 180.29200 * 18 17 15 20 20 N 1.28511 * 109.43852 * 359.56677 * 19 18 17 21 21 N 1.28721 * 110.63613 * 0.44890 * 20 19 18 22 22 C 1.46496 * 126.03316 * 179.72318 * 21 20 19 23 23 H 1.09006 * 109.47231 * 275.21209 * 1 2 3 24 24 H 1.09002 * 109.47498 * 35.21303 * 1 2 3 25 25 H 1.08999 * 109.47002 * 155.21092 * 1 2 3 26 26 H 0.96993 * 120.00250 * 179.97438 * 6 5 3 27 27 H 1.08995 * 109.47092 * 150.00243 * 11 2 1 28 28 H 1.09002 * 109.47721 * 29.99686 * 11 2 1 29 29 H 1.09005 * 109.47035 * 59.99940 * 12 11 2 30 30 H 1.09002 * 109.46909 * 300.00556 * 12 11 2 31 31 H 1.08995 * 109.46909 * 263.17214 * 14 13 12 32 32 H 1.08998 * 109.47008 * 23.17254 * 14 13 12 33 33 H 1.08995 * 109.47018 * 143.17088 * 14 13 12 34 34 H 1.08005 * 126.81348 * 0.03945 * 18 17 15 35 35 H 1.09002 * 109.47427 * 274.72294 * 22 21 20 36 36 H 1.08998 * 109.47403 * 34.72882 * 22 21 20 37 37 H 1.09007 * 109.46831 * 154.72992 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.2281 1.1868 0.0574 5 6 1.4575 2.3869 -0.0738 6 7 0.2800 2.5044 0.5024 7 14 2.1973 3.8364 -0.9908 8 1 1.6777 3.8597 -2.3818 9 1 1.8265 5.0990 -0.3027 10 1 3.6761 3.7029 -1.0172 11 6 2.1974 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4418 13 7 3.1854 -2.9794 1.4413 14 6 2.4534 -4.2484 1.4406 15 6 4.5331 -2.9790 1.4414 16 8 5.1409 -1.9255 1.4486 17 6 5.2698 -4.2537 1.4329 18 6 4.7560 -5.5084 1.6296 19 7 5.7834 -6.3534 1.5414 20 7 6.8597 -5.6943 1.2992 21 7 6.6127 -4.4330 1.2274 22 6 7.5941 -3.3760 0.9713 23 1 -0.3634 0.0934 1.0235 24 1 -0.3634 0.8396 -0.5926 25 1 -0.3633 -0.9330 -0.4309 26 1 -0.2034 3.3437 0.4511 27 1 3.1498 -1.1382 -0.5143 28 1 1.6084 -2.0282 -0.5147 29 1 1.5000 -1.8415 1.9556 30 1 3.0416 -0.9515 1.9559 31 1 2.3776 -4.6246 2.4608 32 1 1.4535 -4.0909 1.0362 33 1 2.9844 -4.9739 0.8244 34 1 3.7240 -5.7623 1.8223 35 1 8.0649 -3.0821 1.9094 36 1 8.3546 -3.7451 0.2832 37 1 7.0930 -2.5140 0.5306 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482593865.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:23 Heat of formation + Delta-G solvation = 121.619981 kcal Electronic energy + Delta-G solvation = -20541.927204 eV Core-core repulsion = 17359.249770 eV Total energy + Delta-G solvation = -3182.677434 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.45655 -39.65438 -36.39941 -35.39402 -34.51384 -32.25164 -31.15903 -28.61923 -28.27349 -26.95699 -25.95285 -24.43926 -23.05056 -22.15846 -20.61343 -19.69356 -17.44416 -17.19990 -16.95832 -16.73221 -15.96706 -15.28301 -14.81784 -14.59669 -14.02835 -13.59956 -13.50602 -13.35761 -13.15126 -13.07035 -12.66749 -12.47767 -12.21395 -11.57975 -11.43992 -11.28740 -11.12572 -10.85881 -10.53581 -10.35971 -10.23574 -10.03438 -9.97572 -9.80144 -9.59542 -8.80266 -8.24689 -7.03105 -5.90891 -3.03880 0.83756 1.95027 2.16681 2.95977 3.05289 3.41018 3.50262 3.52021 4.13499 4.25324 4.52631 4.59015 4.74948 4.88552 4.94365 5.20002 5.23633 5.26054 5.43717 5.51657 5.53532 5.67143 5.75615 6.03189 6.12664 6.20411 6.38406 6.53640 6.62056 6.85044 7.31701 7.31890 7.58504 7.85792 8.01313 8.20300 8.25602 9.15274 9.83030 10.26559 11.19404 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.030025 B = 0.004485 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.320893 B = 6241.988825 C = 6994.481543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.150 3.850 2 N -0.600 5.600 3 C -0.264 4.264 4 H 0.080 0.920 5 C 0.009 3.991 6 N -0.888 5.888 7 Si 0.880 3.120 8 H -0.288 1.288 9 H -0.294 1.294 10 H -0.279 1.279 11 C 0.146 3.854 12 C 0.091 3.909 13 N -0.590 5.590 14 C 0.053 3.947 15 C 0.584 3.416 16 O -0.529 6.529 17 C -0.059 4.059 18 C -0.023 4.023 19 N -0.277 5.277 20 N -0.067 5.067 21 N -0.256 5.256 22 C 0.076 3.924 23 H 0.014 0.986 24 H 0.067 0.933 25 H 0.001 0.999 26 H 0.254 0.746 27 H 0.050 0.950 28 H 0.040 0.960 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.214 0.786 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.496 -14.771 1.627 16.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 N -0.323 5.323 3 C -0.391 4.391 4 H 0.098 0.902 5 C -0.189 4.189 6 N -0.532 5.532 7 Si 0.709 3.291 8 H -0.215 1.215 9 H -0.221 1.221 10 H -0.204 1.204 11 C 0.016 3.984 12 C -0.033 4.033 13 N -0.322 5.322 14 C -0.090 4.090 15 C 0.368 3.632 16 O -0.405 6.405 17 C -0.194 4.194 18 C -0.183 4.183 19 N -0.140 5.140 20 N -0.048 5.048 21 N -0.052 5.052 22 C -0.064 4.064 23 H 0.032 0.968 24 H 0.085 0.915 25 H 0.020 0.980 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.231 0.769 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.789 -15.087 1.552 17.050 hybrid contribution -0.465 1.687 -0.230 1.765 sum 7.325 -13.400 1.322 15.328 Atomic orbital electron populations 1.21095 0.82317 0.96975 0.99094 1.44151 1.02030 1.00715 1.85428 1.19249 0.91187 0.83275 1.45436 0.90228 1.24683 0.96552 0.97253 1.00437 1.70324 1.16250 1.25601 1.41068 0.86575 0.79102 0.82255 0.81148 1.21535 1.22092 1.20369 1.21039 0.96401 0.88025 0.92886 1.22876 0.95498 0.82446 1.02499 1.47720 1.04319 1.08708 1.71494 1.22513 0.98514 0.86035 1.01938 1.16743 0.82482 0.85845 0.78082 1.90843 1.67497 1.31894 1.50263 1.22118 0.85579 0.97895 1.13808 1.24814 1.01450 0.87985 1.04065 1.74897 0.95566 1.27058 1.16505 1.78234 1.21192 0.87651 1.17695 1.47641 1.06934 1.07621 1.43049 1.22566 0.91134 0.88192 1.04544 0.96818 0.91466 0.98016 0.93621 0.93166 0.94205 0.90698 0.89366 0.91760 0.89779 0.89920 0.76942 0.88557 0.88103 0.86410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 3.53 9.25 59.85 0.55 4.08 16 2 N -0.60 -14.65 2.93 -181.12 -0.53 -15.18 16 3 C -0.26 -7.22 9.65 -15.06 -0.15 -7.36 16 4 H 0.08 2.21 8.02 -52.49 -0.42 1.79 16 5 C 0.01 0.26 4.85 -17.43 -0.08 0.17 16 6 N -0.89 -25.38 10.80 55.49 0.60 -24.78 16 7 Si 0.88 21.60 29.67 -169.99 -5.04 16.56 16 8 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 9 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 11 C 0.15 2.85 6.03 -4.04 -0.02 2.83 16 12 C 0.09 1.56 5.70 -4.04 -0.02 1.54 16 13 N -0.59 -8.12 2.87 -182.92 -0.53 -8.64 16 14 C 0.05 0.47 8.74 59.85 0.52 1.00 16 15 C 0.58 8.81 7.64 -12.61 -0.10 8.71 16 16 O -0.53 -9.67 14.51 5.26 0.08 -9.59 16 17 C -0.06 -0.78 6.81 -82.33 -0.56 -1.34 16 18 C -0.02 -0.27 9.93 -17.35 -0.17 -0.44 16 19 N -0.28 -3.78 12.35 30.47 0.38 -3.40 16 20 N -0.07 -0.92 13.14 60.35 0.79 -0.12 16 21 N -0.26 -3.25 3.79 -64.12 -0.24 -3.50 16 22 C 0.08 0.72 10.96 59.84 0.66 1.38 16 23 H 0.01 0.34 8.05 -51.93 -0.42 -0.08 16 24 H 0.07 1.75 6.15 -51.93 -0.32 1.43 16 25 H 0.00 0.03 7.83 -51.93 -0.41 -0.38 16 26 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 28 H 0.04 0.69 7.86 -51.93 -0.41 0.29 16 29 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 30 H 0.09 1.81 7.41 -51.93 -0.38 1.42 16 31 H 0.06 0.45 7.62 -51.93 -0.40 0.05 16 32 H 0.08 0.69 8.02 -51.93 -0.42 0.27 16 33 H 0.08 0.63 4.98 -51.93 -0.26 0.37 16 34 H 0.21 1.65 4.63 -52.48 -0.24 1.41 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.12 1.26 6.46 -51.92 -0.34 0.93 16 LS Contribution 308.67 15.07 4.65 4.65 Total: -1.00 -33.08 308.67 -4.04 -37.13 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: -4.82 Total: -3.68 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: 0.63 Total: 10.57 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: 0.47 Total: -55.63 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.08 Total: -9.59 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.04 Total: 16.56 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.08 -4.04 -37.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482593865.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.747 kcal (2) G-P(sol) polarization free energy of solvation -33.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds