Wall clock time and date at job start Mon Mar 30 2020 00:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36933 * 119.99754 * 2 1 4 4 H 1.08002 * 119.99747 * 176.48472 * 3 2 1 5 5 C 1.38814 * 120.00026 * 356.48066 * 3 2 1 6 6 N 1.31613 * 120.00304 * 34.23779 * 5 3 2 7 7 Si 1.86799 * 119.99835 * 214.23544 * 5 3 2 8 8 H 1.48506 * 109.47269 * 94.99898 * 7 5 3 9 9 H 1.48499 * 109.47315 * 215.00135 * 7 5 3 10 10 H 1.48503 * 109.47284 * 335.00291 * 7 5 3 11 11 C 1.46495 * 119.99722 * 180.02562 * 2 1 3 12 12 C 1.53005 * 109.47046 * 269.99627 * 11 2 1 13 13 N 1.46493 * 109.47395 * 180.02562 * 12 11 2 14 14 C 1.46505 * 119.99988 * 270.00132 * 13 12 11 15 15 C 1.34770 * 120.00312 * 89.99771 * 13 12 11 16 16 O 1.21622 * 120.00056 * 0.36500 * 15 13 12 17 17 C 1.47236 * 120.00479 * 180.35991 * 15 13 12 18 18 C 1.37004 * 127.18689 * 349.16863 * 17 15 13 19 19 N 1.33319 * 106.37388 * 180.29200 * 18 17 15 20 20 N 1.28511 * 109.43852 * 359.56677 * 19 18 17 21 21 N 1.28721 * 110.63613 * 0.44890 * 20 19 18 22 22 C 1.46496 * 126.03316 * 179.72318 * 21 20 19 23 23 H 1.09006 * 109.47231 * 275.21209 * 1 2 3 24 24 H 1.09002 * 109.47498 * 35.21303 * 1 2 3 25 25 H 1.08999 * 109.47002 * 155.21092 * 1 2 3 26 26 H 0.96993 * 120.00250 * 179.97438 * 6 5 3 27 27 H 1.08995 * 109.47092 * 150.00243 * 11 2 1 28 28 H 1.09002 * 109.47721 * 29.99686 * 11 2 1 29 29 H 1.09005 * 109.47035 * 59.99940 * 12 11 2 30 30 H 1.09002 * 109.46909 * 300.00556 * 12 11 2 31 31 H 1.08995 * 109.46909 * 263.17214 * 14 13 12 32 32 H 1.08998 * 109.47008 * 23.17254 * 14 13 12 33 33 H 1.08995 * 109.47018 * 143.17088 * 14 13 12 34 34 H 1.08005 * 126.81348 * 0.03945 * 18 17 15 35 35 H 1.09002 * 109.47427 * 274.72294 * 22 21 20 36 36 H 1.08998 * 109.47403 * 34.72882 * 22 21 20 37 37 H 1.09007 * 109.46831 * 154.72992 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.2281 1.1868 0.0574 5 6 1.4575 2.3869 -0.0738 6 7 0.2800 2.5044 0.5024 7 14 2.1973 3.8364 -0.9908 8 1 1.6777 3.8597 -2.3818 9 1 1.8265 5.0990 -0.3027 10 1 3.6761 3.7029 -1.0172 11 6 2.1974 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4418 13 7 3.1854 -2.9794 1.4413 14 6 2.4534 -4.2484 1.4406 15 6 4.5331 -2.9790 1.4414 16 8 5.1409 -1.9255 1.4486 17 6 5.2698 -4.2537 1.4329 18 6 4.7560 -5.5084 1.6296 19 7 5.7834 -6.3534 1.5414 20 7 6.8597 -5.6943 1.2992 21 7 6.6127 -4.4330 1.2274 22 6 7.5941 -3.3760 0.9713 23 1 -0.3634 0.0934 1.0235 24 1 -0.3634 0.8396 -0.5926 25 1 -0.3633 -0.9330 -0.4309 26 1 -0.2034 3.3437 0.4511 27 1 3.1498 -1.1382 -0.5143 28 1 1.6084 -2.0282 -0.5147 29 1 1.5000 -1.8415 1.9556 30 1 3.0416 -0.9515 1.9559 31 1 2.3776 -4.6246 2.4608 32 1 1.4535 -4.0909 1.0362 33 1 2.9844 -4.9739 0.8244 34 1 3.7240 -5.7623 1.8223 35 1 8.0649 -3.0821 1.9094 36 1 8.3546 -3.7451 0.2832 37 1 7.0930 -2.5140 0.5306 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482593865.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:22 Heat of formation + Delta-G solvation = 98.094570 kcal Electronic energy + Delta-G solvation = -20542.947343 eV Core-core repulsion = 17359.249770 eV Total energy + Delta-G solvation = -3183.697572 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.43457 -40.84630 -37.91913 -36.82371 -35.52369 -33.81779 -32.63476 -30.05107 -29.13355 -27.95337 -27.92144 -25.90131 -24.12870 -23.40283 -22.24053 -20.80677 -18.85231 -18.42329 -18.14596 -17.93233 -17.27979 -16.76420 -16.20885 -15.68507 -15.62804 -15.17576 -14.92057 -14.37869 -14.31894 -14.04330 -13.91499 -13.87508 -13.43766 -13.24942 -12.90928 -12.79573 -12.46776 -12.34427 -12.24665 -12.08567 -11.90466 -11.63933 -11.30470 -11.22186 -10.59655 -10.43549 -9.88828 -8.95919 -8.00062 -5.13296 -0.17318 1.01428 1.18951 1.44183 1.48817 1.56382 1.88350 1.95681 2.52037 3.13579 3.15532 3.34765 3.70641 3.75720 3.88908 4.12694 4.17999 4.25623 4.40739 4.48944 4.61074 4.61919 4.70874 4.84069 4.85603 4.93470 4.94470 5.12166 5.27732 5.38620 5.45951 5.61708 5.74623 6.19247 6.24926 6.87717 7.10587 7.21288 7.86466 8.24037 9.09121 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.030025 B = 0.004485 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.320893 B = 6241.988825 C = 6994.481543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.618 5.618 3 C -0.271 4.271 4 H 0.066 0.934 5 C -0.037 4.037 6 N -0.915 5.915 7 Si 0.939 3.061 8 H -0.286 1.286 9 H -0.295 1.295 10 H -0.276 1.276 11 C 0.148 3.852 12 C 0.110 3.890 13 N -0.586 5.586 14 C 0.042 3.958 15 C 0.582 3.418 16 O -0.571 6.571 17 C -0.077 4.077 18 C -0.002 4.002 19 N -0.298 5.298 20 N -0.077 5.077 21 N -0.255 5.255 22 C 0.071 3.929 23 H -0.004 1.004 24 H 0.037 0.963 25 H 0.042 0.958 26 H 0.252 0.748 27 H 0.030 0.970 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.251 0.749 35 H 0.109 0.891 36 H 0.127 0.873 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.276 -16.716 1.399 17.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.341 5.341 3 C -0.400 4.400 4 H 0.084 0.916 5 C -0.233 4.233 6 N -0.560 5.560 7 Si 0.767 3.233 8 H -0.213 1.213 9 H -0.222 1.222 10 H -0.201 1.201 11 C 0.020 3.980 12 C -0.015 4.015 13 N -0.317 5.317 14 C -0.099 4.099 15 C 0.369 3.631 16 O -0.451 6.451 17 C -0.211 4.211 18 C -0.162 4.162 19 N -0.160 5.160 20 N -0.058 5.058 21 N -0.052 5.052 22 C -0.069 4.069 23 H 0.014 0.986 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.266 0.734 35 H 0.127 0.873 36 H 0.145 0.855 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.581 -17.098 1.320 18.750 hybrid contribution -0.357 2.200 -0.152 2.234 sum 7.225 -14.897 1.169 16.598 Atomic orbital electron populations 1.20880 0.81879 0.97746 0.97759 1.44323 1.02568 1.01431 1.85806 1.19357 0.90845 0.84857 1.44986 0.91588 1.25271 0.97344 0.99482 1.01212 1.70409 1.17423 1.26046 1.42146 0.85670 0.78378 0.79484 0.79727 1.21297 1.22230 1.20121 1.21127 0.95502 0.86976 0.94346 1.22257 0.95659 0.83344 1.00212 1.47645 1.04064 1.09243 1.70789 1.22896 0.98839 0.83858 1.04269 1.16998 0.82839 0.85992 0.77313 1.90826 1.68486 1.33544 1.52227 1.21941 0.85972 0.97481 1.15722 1.25411 1.02478 0.86630 1.01654 1.74900 0.96069 1.27644 1.17412 1.78211 1.21558 0.87963 1.18098 1.47915 1.07315 1.07824 1.42182 1.22765 0.91054 0.87248 1.05828 0.98569 0.94469 0.93982 0.93885 0.95134 0.91022 0.89206 0.93364 0.88978 0.88263 0.88243 0.73393 0.87285 0.85471 0.87944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 7.51 9.25 127.77 1.18 8.70 16 2 N -0.62 -30.01 2.93 -726.93 -2.13 -32.14 16 3 C -0.27 -15.08 9.65 84.03 0.81 -14.27 16 4 H 0.07 3.77 8.02 -2.91 -0.02 3.75 16 5 C -0.04 -2.06 4.85 84.86 0.41 -1.65 16 6 N -0.91 -52.99 10.80 21.65 0.23 -52.75 16 7 Si 0.94 45.08 29.67 68.60 2.04 47.12 16 8 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 9 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 11 C 0.15 5.65 6.03 86.38 0.52 6.17 16 12 C 0.11 3.70 5.70 86.38 0.49 4.19 16 13 N -0.59 -14.98 2.87 -850.90 -2.44 -17.43 16 14 C 0.04 0.58 8.74 127.77 1.12 1.70 16 15 C 0.58 17.10 7.64 86.61 0.66 17.76 16 16 O -0.57 -21.38 14.51 -4.10 -0.06 -21.44 16 17 C -0.08 -1.88 6.81 40.41 0.27 -1.61 16 18 C 0.00 -0.04 9.93 84.18 0.84 0.80 16 19 N -0.30 -7.44 12.35 -57.50 -0.71 -8.15 16 20 N -0.08 -2.01 13.14 37.02 0.49 -1.52 16 21 N -0.26 -6.17 3.79 -356.77 -1.35 -7.52 16 22 C 0.07 1.29 10.96 127.77 1.40 2.69 16 23 H 0.00 -0.20 8.05 -2.38 -0.02 -0.22 16 24 H 0.04 1.93 6.15 -2.39 -0.01 1.92 16 25 H 0.04 1.57 7.83 -2.39 -0.02 1.56 16 26 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 27 H 0.03 1.27 8.04 -2.39 -0.02 1.26 16 28 H 0.07 2.28 7.86 -2.39 -0.02 2.26 16 29 H 0.09 2.76 8.07 -2.38 -0.02 2.74 16 30 H 0.05 2.02 7.41 -2.39 -0.02 2.00 16 31 H 0.09 0.83 7.62 -2.39 -0.02 0.82 16 32 H 0.10 1.15 8.02 -2.39 -0.02 1.13 16 33 H 0.10 1.07 4.98 -2.39 -0.01 1.06 16 34 H 0.25 2.72 4.63 -2.91 -0.01 2.70 16 35 H 0.11 1.69 8.14 -2.39 -0.02 1.68 16 36 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.10 2.25 6.46 -2.38 -0.02 2.23 16 Total: -1.00 -73.02 308.67 4.85 -68.17 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: 1.08 Total: 1.19 kcal Atomic # 6 Polarization: 16.77 SS G_CDS: 7.71 Total: 24.48 kcal Atomic # 7 Polarization: -113.60 SS G_CDS: -5.92 Total: -119.52 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.06 Total: -21.44 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.04 Total: 47.12 kcal Total: -73.02 4.85 -68.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482593865.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.269 kcal (2) G-P(sol) polarization free energy of solvation -73.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds