Wall clock time and date at job start Mon Mar 30 2020 00:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36946 * 119.99974 * 2 1 4 4 H 1.07996 * 120.00139 * 205.77408 * 3 2 1 5 5 C 1.38811 * 119.99703 * 25.77382 * 3 2 1 6 6 N 1.31616 * 120.00069 * 10.06870 * 5 3 2 7 7 Si 1.86803 * 119.99910 * 190.07159 * 5 3 2 8 8 H 1.48503 * 109.47180 * 89.99705 * 7 5 3 9 9 H 1.48494 * 109.47082 * 209.99998 * 7 5 3 10 10 H 1.48506 * 109.46960 * 329.99841 * 7 5 3 11 11 C 1.46499 * 120.00227 * 180.02562 * 2 1 3 12 12 C 1.53008 * 109.47057 * 90.00128 * 11 2 1 13 13 N 1.46498 * 109.46920 * 180.02562 * 12 11 2 14 14 C 1.46498 * 120.00236 * 89.99665 * 13 12 11 15 15 C 1.34776 * 119.99595 * 269.99655 * 13 12 11 16 16 O 1.21564 * 120.00311 * 5.34421 * 15 13 12 17 17 C 1.47798 * 119.99952 * 185.34808 * 15 13 12 18 18 C 1.40921 * 127.23792 * 186.35663 * 17 15 13 19 19 N 1.31138 * 105.77711 * 179.97438 * 18 17 15 20 20 N 1.28511 * 109.06000 * 359.97438 * 19 18 17 21 21 C 1.46495 * 124.44838 * 179.97438 * 20 19 18 22 22 N 1.28598 * 111.11042 * 359.74280 * 20 19 18 23 23 H 1.09003 * 109.47167 * 266.43070 * 1 2 3 24 24 H 1.08997 * 109.47376 * 26.42967 * 1 2 3 25 25 H 1.08995 * 109.47549 * 146.43002 * 1 2 3 26 26 H 0.96999 * 119.99863 * 180.02562 * 6 5 3 27 27 H 1.08997 * 109.46990 * 330.00060 * 11 2 1 28 28 H 1.09006 * 109.47190 * 209.99764 * 11 2 1 29 29 H 1.09002 * 109.47149 * 59.99639 * 12 11 2 30 30 H 1.09000 * 109.46429 * 299.99927 * 12 11 2 31 31 H 1.09008 * 109.47032 * 94.58743 * 14 13 12 32 32 H 1.08995 * 109.47236 * 214.58478 * 14 13 12 33 33 H 1.08997 * 109.47131 * 334.59113 * 14 13 12 34 34 H 1.08001 * 127.11131 * 359.94787 * 18 17 15 35 35 H 1.08998 * 109.47890 * 90.01727 * 21 20 19 36 36 H 1.09002 * 109.47252 * 210.02437 * 21 20 19 37 37 H 1.09002 * 109.46624 * 330.01821 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1490 1.2325 -0.4067 5 6 1.5591 2.3283 0.5227 6 7 0.4306 2.2374 1.1940 7 14 2.3660 3.9945 0.2734 8 1 1.8593 4.6072 -0.9809 9 1 2.0421 4.8782 1.4220 10 1 3.8382 3.8227 0.1808 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7097 -1.4433 13 7 3.1845 -2.9787 -1.4439 14 6 2.4516 -4.2472 -1.4446 15 6 4.5323 -2.9791 -1.4437 16 8 5.1405 -1.9312 -1.3451 17 6 5.2709 -4.2537 -1.5636 18 6 6.6628 -4.4460 -1.4567 19 7 6.8597 -5.7308 -1.6304 20 7 5.7274 -6.3061 -1.8266 21 6 5.5569 -7.7424 -2.0592 22 7 4.7631 -5.4562 -1.7872 23 1 -0.3634 -0.0640 1.0257 24 1 -0.3634 0.9202 -0.4574 25 1 -0.3634 -0.8562 -0.5682 26 1 0.0178 3.0357 1.5589 27 1 1.6084 -2.0286 0.5129 28 1 3.1500 -1.1385 0.5133 29 1 3.0415 -0.9498 -1.9568 30 1 1.5001 -1.8398 -1.9571 31 1 2.3411 -4.6024 -2.4692 32 1 3.0023 -4.9853 -0.8616 33 1 1.4661 -4.0976 -1.0037 34 1 7.4125 -3.6911 -1.2707 35 1 5.4163 -8.2509 -1.1054 36 1 4.6840 -7.9071 -2.6909 37 1 6.4436 -8.1379 -2.5545 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482635355.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:14 Heat of formation + Delta-G solvation = 93.325809 kcal Electronic energy + Delta-G solvation = -20265.205686 eV Core-core repulsion = 17081.301325 eV Total energy + Delta-G solvation = -3183.904361 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.70309 -40.76517 -37.82627 -36.49303 -34.79740 -33.90996 -33.27898 -30.43749 -28.85645 -27.89414 -27.57799 -25.95678 -24.13856 -23.01308 -22.36957 -20.60504 -18.77665 -18.41204 -18.06570 -17.92524 -17.31355 -16.67190 -16.29683 -15.76821 -15.58999 -15.14963 -14.82998 -14.41179 -14.00253 -13.89752 -13.78148 -13.61818 -13.35509 -13.06318 -12.94237 -12.80662 -12.77992 -12.39525 -12.14928 -11.96272 -11.87590 -11.60892 -11.46865 -11.28582 -10.66058 -10.47069 -9.81649 -8.70614 -7.86117 -5.36251 0.20712 0.86049 1.27360 1.46154 1.46770 1.57082 1.93565 2.13751 2.51768 2.83553 3.29021 3.60672 3.79117 3.93923 4.16701 4.32744 4.34962 4.37550 4.43209 4.48628 4.63046 4.69192 4.76081 4.85944 4.87719 4.97462 5.02284 5.14547 5.35084 5.54245 5.58939 5.63003 5.70902 6.29104 6.35617 6.94371 7.09985 7.15987 7.84921 8.27963 9.18247 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.036797 B = 0.004001 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.751470 B = 6996.587215 C = 7603.844487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.616 5.616 3 C -0.266 4.266 4 H 0.059 0.941 5 C -0.048 4.048 6 N -0.937 5.937 7 Si 0.968 3.032 8 H -0.281 1.281 9 H -0.290 1.290 10 H -0.275 1.275 11 C 0.147 3.853 12 C 0.114 3.886 13 N -0.596 5.596 14 C 0.084 3.916 15 C 0.594 3.406 16 O -0.567 6.567 17 C -0.063 4.063 18 C 0.026 3.974 19 N -0.297 5.297 20 N -0.135 5.135 21 C 0.088 3.912 22 N -0.239 5.239 23 H -0.004 1.004 24 H 0.030 0.970 25 H 0.035 0.965 26 H 0.250 0.750 27 H 0.055 0.945 28 H 0.023 0.977 29 H 0.053 0.947 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.216 0.784 35 H 0.113 0.887 36 H 0.126 0.874 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.754 -23.415 -7.877 25.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.340 5.340 3 C -0.396 4.396 4 H 0.077 0.923 5 C -0.243 4.243 6 N -0.583 5.583 7 Si 0.796 3.204 8 H -0.207 1.207 9 H -0.216 1.216 10 H -0.200 1.200 11 C 0.019 3.981 12 C -0.011 4.011 13 N -0.328 5.328 14 C -0.058 4.058 15 C 0.380 3.620 16 O -0.444 6.444 17 C -0.223 4.223 18 C -0.156 4.156 19 N -0.138 5.138 20 N -0.040 5.040 21 C -0.049 4.049 22 N -0.090 5.090 23 H 0.015 0.985 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.233 0.767 35 H 0.132 0.868 36 H 0.144 0.856 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.777 -24.095 -7.957 26.265 hybrid contribution 0.396 2.109 0.320 2.170 sum 7.173 -21.986 -7.636 24.355 Atomic orbital electron populations 1.20582 0.82078 0.97422 0.96800 1.44048 1.02383 1.01202 1.86401 1.19447 0.99766 0.87526 1.32899 0.92327 1.25808 0.98632 1.01992 0.97842 1.70198 1.20721 1.28287 1.39082 0.85252 0.78256 0.79769 0.77093 1.20705 1.21579 1.20033 1.21034 0.95047 0.87454 0.94547 1.22069 0.96007 0.83649 0.99389 1.47825 1.04892 1.08965 1.71121 1.22111 0.97195 0.83206 1.03275 1.17114 0.82181 0.85997 0.76701 1.90827 1.68766 1.32948 1.51861 1.22767 0.94454 0.92321 1.12769 1.25060 0.95547 0.93036 1.01967 1.74014 1.11992 1.08441 1.19303 1.48787 0.99339 1.11322 1.44587 1.22820 1.07611 0.68200 1.06311 1.74546 1.18884 0.98769 1.16787 0.98527 0.95128 0.94707 0.94039 0.92718 0.95821 0.92804 0.88914 0.90973 0.89849 0.89650 0.76722 0.86845 0.85567 0.85789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.75 8.99 127.77 1.15 9.90 16 2 N -0.62 -32.52 2.92 -726.94 -2.12 -34.64 16 3 C -0.27 -15.64 9.64 84.03 0.81 -14.83 16 4 H 0.06 3.51 7.85 -2.91 -0.02 3.49 16 5 C -0.05 -2.78 5.10 84.86 0.43 -2.35 16 6 N -0.94 -56.82 10.77 21.65 0.23 -56.59 16 7 Si 0.97 47.31 29.57 68.60 2.03 49.34 16 8 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 9 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 10 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 11 C 0.15 6.44 6.01 86.38 0.52 6.96 16 12 C 0.11 4.23 5.67 86.38 0.49 4.72 16 13 N -0.60 -18.78 2.87 -850.24 -2.44 -21.22 16 14 C 0.08 1.83 9.36 127.77 1.20 3.03 16 15 C 0.59 20.67 7.67 86.77 0.67 21.33 16 16 O -0.57 -24.49 16.59 -3.92 -0.07 -24.56 16 17 C -0.06 -1.75 6.80 42.24 0.29 -1.47 16 18 C 0.03 0.65 12.05 85.45 1.03 1.68 16 19 N -0.30 -6.47 12.01 -56.16 -0.67 -7.14 16 20 N -0.14 -2.42 4.34 -206.55 -0.90 -3.31 16 21 C 0.09 0.46 11.55 127.77 1.48 1.93 16 22 N -0.24 -5.29 8.95 -48.17 -0.43 -5.72 16 23 H 0.00 -0.19 7.78 -2.39 -0.02 -0.21 16 24 H 0.03 1.65 6.86 -2.39 -0.02 1.63 16 25 H 0.03 1.41 8.10 -2.39 -0.02 1.39 16 26 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 27 H 0.05 2.16 8.07 -2.39 -0.02 2.14 16 28 H 0.02 1.15 8.04 -2.38 -0.02 1.14 16 29 H 0.05 2.35 7.50 -2.39 -0.02 2.33 16 30 H 0.09 3.04 8.07 -2.39 -0.02 3.02 16 31 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.08 1.74 5.90 -2.39 -0.01 1.73 16 33 H 0.08 1.65 8.04 -2.39 -0.02 1.63 16 34 H 0.22 4.71 8.06 -2.91 -0.02 4.69 16 35 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 36 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 37 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 Total: -1.00 -77.30 317.32 4.75 -72.55 By element: Atomic # 1 Polarization: -0.69 SS G_CDS: 1.06 Total: 0.38 kcal Atomic # 6 Polarization: 22.86 SS G_CDS: 8.05 Total: 30.92 kcal Atomic # 7 Polarization: -122.30 SS G_CDS: -6.33 Total: -128.63 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.07 Total: -24.56 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -77.30 4.75 -72.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482635355.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.880 kcal (2) G-P(sol) polarization free energy of solvation -77.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds