Wall clock time and date at job start Mon Mar 30 2020 00:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.47417 * 2 1 4 4 C 1.53004 * 109.47363 * 239.99930 * 2 1 3 5 5 N 1.46500 * 109.47190 * 184.99969 * 4 2 1 6 6 C 1.36942 * 119.99711 * 179.97438 * 5 4 2 7 7 H 1.07996 * 120.00270 * 0.02562 * 6 5 4 8 8 C 1.38809 * 119.99722 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00303 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00077 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46838 * 60.00147 * 10 8 6 12 12 H 1.48498 * 109.47729 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47202 * 300.00635 * 10 8 6 14 14 N 1.46499 * 109.47226 * 119.99939 * 2 1 3 15 15 C 1.34779 * 119.99734 * 275.00236 * 14 2 1 16 16 O 1.21280 * 120.00387 * 359.97438 * 15 14 2 17 17 C 1.50700 * 119.99719 * 179.97438 * 15 14 2 18 18 C 1.53005 * 109.47062 * 179.97438 * 17 15 14 19 19 N 1.46499 * 109.47396 * 179.97438 * 18 17 15 20 20 C 1.35308 * 125.86944 * 124.99861 * 19 18 17 21 21 C 1.35347 * 106.17713 * 180.02562 * 20 19 18 22 22 N 1.33774 * 106.49812 * 0.02562 * 21 20 19 23 23 N 1.28637 * 108.88333 * 0.02562 * 22 21 20 24 24 H 1.08999 * 109.47357 * 300.00041 * 1 2 3 25 25 H 1.09007 * 109.47123 * 60.00200 * 1 2 3 26 26 H 1.08998 * 109.47165 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46954 * 305.00050 * 4 2 1 28 28 H 1.09002 * 109.46912 * 64.99619 * 4 2 1 29 29 H 0.97003 * 120.00171 * 359.97438 * 5 4 2 30 30 H 0.96992 * 120.00382 * 179.97438 * 9 8 6 31 31 H 0.96999 * 120.00320 * 95.00259 * 14 2 1 32 32 H 1.09001 * 109.47072 * 59.99955 * 17 15 14 33 33 H 1.08993 * 109.47309 * 299.99556 * 17 15 14 34 34 H 1.09001 * 109.46828 * 60.00278 * 18 17 15 35 35 H 1.08993 * 109.47081 * 300.00168 * 18 17 15 36 36 H 1.07997 * 126.91159 * 0.02959 * 20 19 18 37 37 H 1.08002 * 126.75518 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.1838 -1.4389 -2.2067 7 1 3.6468 -1.8441 -3.0516 8 6 5.5672 -1.5380 -2.1514 9 7 6.2218 -1.0438 -1.1220 10 14 6.4999 -2.3741 -3.5371 11 1 6.2424 -1.6557 -4.8111 12 1 7.9547 -2.3499 -3.2400 13 1 6.0440 -3.7819 -3.6619 14 7 2.0183 -0.6906 1.1962 15 6 2.1470 -0.0182 2.3571 16 8 1.8589 1.1587 2.4115 17 6 2.6488 -0.7287 3.5877 18 6 2.7009 0.2546 4.7588 19 7 3.1881 -0.4362 5.9553 20 6 4.2445 -0.0605 6.7128 21 6 4.3390 -0.9734 7.7074 22 7 3.3491 -1.8519 7.5121 23 7 2.6861 -1.5060 6.4655 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 1.6054 -1.7198 -1.2951 28 1 1.7516 -0.1584 -2.1370 29 1 3.9825 -0.4621 -0.4319 30 1 7.1885 -1.1133 -1.0831 31 1 2.2490 -1.6317 1.1527 32 1 3.6479 -1.1212 3.3986 33 1 1.9759 -1.5504 3.8326 34 1 1.7019 0.6475 4.9480 35 1 3.3740 1.0761 4.5137 36 1 4.8837 0.7957 6.5554 37 1 5.0702 -0.9901 8.5021 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483124482.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:21 Heat of formation + Delta-G solvation = 43.421388 kcal Electronic energy + Delta-G solvation = -19793.899061 eV Core-core repulsion = 16607.830681 eV Total energy + Delta-G solvation = -3186.068379 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.17780 -40.95084 -37.85502 -36.21154 -35.45381 -33.24781 -32.26299 -31.92646 -31.07519 -27.43763 -26.45186 -24.52279 -23.61507 -22.81096 -21.90325 -21.31513 -19.26065 -18.87701 -17.67844 -17.46635 -17.19304 -16.72047 -16.39595 -15.80023 -15.47114 -15.38168 -15.13848 -14.67842 -14.50154 -13.93494 -13.65936 -13.60589 -13.48889 -13.05427 -12.82473 -12.75678 -12.64719 -12.43087 -12.20370 -11.90432 -11.87522 -11.70661 -11.22338 -11.01143 -10.87344 -10.31843 -10.06466 -9.02063 -7.96081 -5.25028 0.66396 1.34089 1.48636 1.50341 1.56417 1.58087 1.64784 2.28040 2.55675 3.38638 3.39711 3.63533 3.67269 3.78360 3.88703 4.06161 4.24841 4.27575 4.31422 4.34509 4.45962 4.53298 4.65193 4.80876 4.86576 4.88150 4.94658 5.12108 5.29742 5.31758 5.49835 5.56301 5.63990 6.25406 6.52107 7.18197 7.33192 7.52999 8.06501 8.30311 9.26793 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017259 B = 0.004204 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.963933 B = 6658.251164 C = 7900.081519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.140 3.860 3 H 0.065 0.935 4 C 0.144 3.856 5 N -0.743 5.743 6 C -0.247 4.247 7 H 0.078 0.922 8 C -0.070 4.070 9 N -0.967 5.967 10 Si 0.971 3.029 11 H -0.280 1.280 12 H -0.298 1.298 13 H -0.277 1.277 14 N -0.707 5.707 15 C 0.524 3.476 16 O -0.578 6.578 17 C -0.145 4.145 18 C 0.135 3.865 19 N -0.290 5.290 20 C -0.036 4.036 21 C -0.064 4.064 22 N -0.312 5.312 23 N -0.123 5.123 24 H 0.055 0.945 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.037 0.963 29 H 0.375 0.625 30 H 0.251 0.749 31 H 0.410 0.590 32 H 0.104 0.896 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.130 0.870 36 H 0.230 0.770 37 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.411 2.863 12.239 14.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.036 3.964 3 H 0.083 0.917 4 C 0.017 3.983 5 N -0.387 5.387 6 C -0.379 4.379 7 H 0.096 0.904 8 C -0.263 4.263 9 N -0.618 5.618 10 Si 0.800 3.200 11 H -0.206 1.206 12 H -0.224 1.224 13 H -0.203 1.203 14 N -0.357 5.357 15 C 0.311 3.689 16 O -0.458 6.458 17 C -0.185 4.185 18 C 0.015 3.985 19 N -0.084 5.084 20 C -0.188 4.188 21 C -0.222 4.222 22 N -0.177 5.177 23 N -0.103 5.103 24 H 0.074 0.926 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.207 0.793 30 H 0.059 0.941 31 H 0.245 0.755 32 H 0.122 0.878 33 H 0.136 0.864 34 H 0.130 0.870 35 H 0.148 0.852 36 H 0.246 0.754 37 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -8.746 2.526 11.940 15.015 hybrid contribution 1.893 0.161 -0.573 1.985 sum -6.853 2.686 11.367 13.542 Atomic orbital electron populations 1.22008 0.92690 1.03067 1.02785 1.21109 0.95308 0.96273 0.83759 0.91726 1.21145 0.84006 0.97998 0.95143 1.42509 1.01843 1.69961 1.24346 1.19600 0.89918 1.28588 0.99795 0.90444 1.25502 0.97462 1.02903 1.00421 1.69792 1.07071 1.52670 1.32246 0.85254 0.77109 0.78615 0.79010 1.20597 1.22396 1.20311 1.45983 1.65893 1.14723 1.09129 1.20453 0.76835 0.86715 0.84910 1.90683 1.52434 1.16947 1.85785 1.21763 1.05229 0.99998 0.91544 1.21902 1.04059 0.93796 0.78773 1.47694 1.20969 1.18430 1.21267 1.24460 0.94415 1.05315 0.94571 1.24252 1.01094 0.93689 1.03126 1.75055 1.07544 1.25185 1.09938 1.78234 1.22410 1.02067 1.07569 0.92588 0.90253 0.91098 0.94372 0.94471 0.79274 0.94062 0.75473 0.87773 0.86413 0.87047 0.85172 0.75362 0.76426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.48 71.98 0.68 -2.78 16 2 C 0.14 4.28 2.73 44.99 0.12 4.40 16 3 H 0.06 2.29 7.58 -2.38 -0.02 2.27 16 4 C 0.14 5.17 5.82 86.38 0.50 5.67 16 5 N -0.74 -35.27 5.43 -343.44 -1.87 -37.13 16 6 C -0.25 -13.15 9.99 84.03 0.84 -12.31 16 7 H 0.08 3.93 7.83 -2.91 -0.02 3.90 16 8 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 9 N -0.97 -57.12 13.06 21.65 0.28 -56.84 16 10 Si 0.97 44.64 29.55 68.60 2.03 46.67 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 12 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 13 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 14 N -0.71 -20.12 4.52 -442.53 -2.00 -22.12 16 15 C 0.52 14.43 7.79 87.66 0.68 15.11 16 16 O -0.58 -18.87 15.64 -3.03 -0.05 -18.91 16 17 C -0.14 -3.09 5.82 29.85 0.17 -2.92 16 18 C 0.14 2.54 5.74 86.38 0.50 3.04 16 19 N -0.29 -6.16 3.44 -347.74 -1.20 -7.36 16 20 C -0.04 -0.60 11.57 83.49 0.97 0.37 16 21 C -0.06 -1.23 12.05 83.73 1.01 -0.22 16 22 N -0.31 -8.62 12.41 -58.26 -0.72 -9.34 16 23 N -0.12 -3.39 12.91 37.02 0.48 -2.91 16 24 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 26 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.38 19.14 7.33 -92.71 -0.68 18.46 16 30 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 31 H 0.41 11.16 8.60 -92.71 -0.80 10.37 16 32 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.12 2.34 8.12 -2.39 -0.02 2.33 16 34 H 0.11 2.04 8.10 -2.39 -0.02 2.02 16 35 H 0.13 2.09 8.03 -2.39 -0.02 2.07 16 36 H 0.23 1.74 8.06 -2.91 -0.02 1.72 16 37 H 0.22 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -71.37 323.66 2.51 -68.86 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: -0.39 Total: 32.15 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 5.94 Total: 6.94 kcal Atomic # 7 Polarization: -130.68 SS G_CDS: -5.02 Total: -135.70 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.05 Total: -18.91 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -71.37 2.51 -68.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483124482.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.283 kcal (2) G-P(sol) polarization free energy of solvation -71.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds