Wall clock time and date at job start Mon Mar 30 2020 00:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46503 * 109.47038 * 2 1 4 4 C 1.34820 * 126.59594 * 125.29199 * 3 2 1 5 5 C 1.36595 * 106.83694 * 180.13669 * 4 3 2 6 6 C 1.47527 * 125.76901 * 179.89961 * 5 4 3 7 7 O 1.21592 * 119.99745 * 359.71335 * 6 5 4 8 8 N 1.34770 * 120.00106 * 179.71168 * 6 5 4 9 9 C 1.46500 * 120.00256 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.46596 * 325.00243 * 9 8 6 11 11 C 1.53006 * 109.47249 * 84.99846 * 9 8 6 12 12 C 1.52997 * 109.47473 * 205.00145 * 9 8 6 13 13 N 1.46503 * 109.46923 * 54.99641 * 12 9 8 14 14 C 1.36937 * 119.99744 * 180.02562 * 13 12 9 15 15 H 1.08000 * 119.99760 * 359.97438 * 14 13 12 16 16 C 1.38810 * 120.00054 * 180.02562 * 14 13 12 17 17 N 1.31623 * 119.99818 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00214 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46699 * 89.99861 * 18 16 14 20 20 H 1.48497 * 109.47375 * 209.99898 * 18 16 14 21 21 H 1.48494 * 109.46940 * 330.00180 * 18 16 14 22 22 N 1.34403 * 108.46015 * 359.62995 * 5 4 3 23 23 N 1.28761 * 109.52378 * 0.23252 * 22 5 4 24 24 H 1.09001 * 109.47216 * 299.99867 * 1 2 3 25 25 H 1.09000 * 109.47276 * 60.00430 * 1 2 3 26 26 H 1.09008 * 109.46909 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47216 * 240.00133 * 2 1 3 28 28 H 1.09000 * 109.47276 * 119.99569 * 2 1 3 29 29 H 1.07997 * 126.57720 * 359.97438 * 4 3 2 30 30 H 0.97005 * 120.00370 * 359.97438 * 8 6 5 31 31 H 1.09001 * 109.47002 * 60.00085 * 11 9 8 32 32 H 1.08993 * 109.46955 * 180.02562 * 11 9 8 33 33 H 1.09000 * 109.47050 * 300.00351 * 11 9 8 34 34 H 1.08993 * 109.47322 * 174.99832 * 12 9 8 35 35 H 1.09002 * 109.47196 * 294.99955 * 12 9 8 36 36 H 0.96994 * 120.00097 * 0.02562 * 13 12 9 37 37 H 0.97001 * 119.99831 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.8757 1.9306 0.8835 5 6 3.0503 3.2324 0.5084 6 6 3.9080 4.2191 1.1918 7 8 4.5326 3.8977 2.1843 8 7 3.9993 5.4768 0.7161 9 6 4.8515 6.4565 1.3944 10 1 4.8249 6.2785 2.4694 11 6 6.2893 6.3179 0.8898 12 6 4.3410 7.8681 1.0984 13 7 2.9279 7.9648 1.4725 14 6 2.2521 9.1427 1.2964 15 1 2.7610 10.0005 0.8822 16 6 0.9132 9.2345 1.6513 17 7 0.2932 8.1891 2.1566 18 14 -0.0085 10.8415 1.4119 19 1 -0.6220 10.8634 0.0596 20 1 -1.0731 10.9596 2.4404 21 1 0.9368 11.9789 1.5450 22 7 2.3132 3.4607 -0.5920 23 7 1.6876 2.3846 -0.9219 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.3343 1.4369 1.7275 30 1 3.5013 5.7331 -0.0760 31 1 6.3159 6.4958 -0.1852 32 1 6.9234 7.0465 1.3949 33 1 6.6530 5.3122 1.1007 34 1 4.9193 8.5915 1.6731 35 1 4.4504 8.0784 0.0345 36 1 2.4710 7.1944 1.8448 37 1 -0.6423 8.2534 2.4050 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483278874.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:21 Heat of formation + Delta-G solvation = 66.815558 kcal Electronic energy + Delta-G solvation = -20034.932637 eV Core-core repulsion = 16849.878705 eV Total energy + Delta-G solvation = -3185.053932 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.12679 -39.17571 -36.07959 -35.52906 -33.55517 -31.49806 -31.37031 -30.31741 -29.47129 -25.63560 -24.78264 -23.79117 -22.48209 -21.78939 -20.69429 -19.92029 -18.05299 -17.03865 -16.24084 -16.15564 -15.88244 -14.86127 -14.72498 -14.67164 -14.14540 -13.88783 -13.56244 -13.22805 -13.01815 -12.65780 -12.30590 -12.23166 -12.15186 -12.02703 -11.76895 -11.54430 -11.12294 -10.84164 -10.78144 -10.39879 -10.38592 -9.99944 -9.78555 -9.67643 -9.22838 -8.85055 -8.60120 -6.88603 -5.70761 -3.00439 1.17435 1.89745 1.98702 3.46905 3.49046 3.52492 3.54415 3.61990 4.12850 4.30191 4.48971 4.63281 4.71243 4.80329 5.02308 5.16278 5.19386 5.34257 5.46740 5.55314 5.61467 5.72077 5.73778 5.90470 6.08646 6.17071 6.25974 6.33142 6.46845 6.54592 6.76824 7.00329 7.74398 7.83851 8.11756 8.46741 8.55558 9.58552 10.15244 10.50460 11.51620 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.016564 B = 0.004990 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.012285 B = 5609.736518 C = 6924.347082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.120 3.880 3 N -0.365 5.365 4 C 0.088 3.912 5 C -0.094 4.094 6 C 0.605 3.395 7 O -0.551 6.551 8 N -0.693 5.693 9 C 0.133 3.867 10 H 0.089 0.911 11 C -0.157 4.157 12 C 0.144 3.856 13 N -0.731 5.731 14 C -0.242 4.242 15 H 0.071 0.929 16 C -0.012 4.012 17 N -0.930 5.930 18 Si 0.907 3.093 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 N -0.196 5.196 23 N -0.066 5.066 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.203 0.797 30 H 0.412 0.588 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.035 0.965 35 H 0.025 0.975 36 H 0.386 0.614 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.096 -17.996 -4.086 19.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.001 4.001 3 N -0.151 5.151 4 C -0.069 4.069 5 C -0.233 4.233 6 C 0.389 3.611 7 O -0.428 6.428 8 N -0.343 5.343 9 C 0.028 3.972 10 H 0.107 0.893 11 C -0.216 4.216 12 C 0.016 3.984 13 N -0.376 5.376 14 C -0.373 4.373 15 H 0.089 0.911 16 C -0.208 4.208 17 N -0.579 5.579 18 Si 0.738 3.262 19 H -0.217 1.217 20 H -0.219 1.219 21 H -0.208 1.208 22 N -0.070 5.070 23 N -0.047 5.047 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.114 0.886 28 H 0.121 0.879 29 H 0.219 0.781 30 H 0.248 0.752 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.043 0.957 36 H 0.220 0.780 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.678 -17.721 -4.665 19.184 hybrid contribution -0.570 0.325 0.549 0.855 sum 5.108 -17.397 -4.115 18.592 Atomic orbital electron populations 1.22093 0.92771 1.03489 1.04335 1.21983 0.96906 0.76417 1.04812 1.50603 1.31693 1.12276 1.20543 1.23333 0.93377 0.94217 0.95969 1.21558 1.07588 0.94902 0.99287 1.16725 0.79911 0.81609 0.82877 1.90762 1.46920 1.79424 1.25735 1.45799 1.47233 1.09524 1.31722 1.21308 0.89115 0.88668 0.98066 0.89320 1.22106 0.96035 1.02075 1.01395 1.20988 0.87765 0.91774 0.97875 1.42357 1.05342 1.13373 1.76570 1.19216 0.92691 0.90197 1.35195 0.91119 1.24748 0.96899 0.97442 1.01717 1.69681 1.10709 1.28786 1.48689 0.86190 0.79603 0.83100 0.77279 1.21715 1.21855 1.20767 1.74701 1.04232 1.17668 1.10361 1.81969 1.20484 0.90333 1.11869 0.91522 0.90639 0.90053 0.88554 0.87851 0.78052 0.75156 0.92485 0.91555 0.92407 0.94765 0.95692 0.77956 0.93574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 10.12 37.15 0.38 -0.71 16 2 C 0.12 0.74 7.26 -4.04 -0.03 0.71 16 3 N -0.37 -4.15 3.69 -61.06 -0.23 -4.37 16 4 C 0.09 1.08 11.27 -16.83 -0.19 0.89 16 5 C -0.09 -1.52 6.99 -83.55 -0.58 -2.11 16 6 C 0.60 10.90 7.78 -12.48 -0.10 10.80 16 7 O -0.55 -10.70 16.53 5.29 0.09 -10.61 16 8 N -0.69 -12.51 4.51 -54.85 -0.25 -12.75 16 9 C 0.13 2.35 2.73 -67.93 -0.19 2.16 16 10 H 0.09 1.71 7.58 -51.93 -0.39 1.32 16 11 C -0.16 -2.23 9.48 37.16 0.35 -1.88 16 12 C 0.14 2.92 5.82 -4.04 -0.02 2.90 16 13 N -0.73 -18.92 5.43 -59.91 -0.33 -19.25 16 14 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 15 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 16 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 17 N -0.93 -28.95 13.06 55.49 0.72 -28.23 16 18 Si 0.91 22.86 29.55 -169.99 -5.02 17.83 16 19 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 20 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 N -0.20 -3.40 12.04 32.85 0.40 -3.00 16 23 N -0.07 -1.01 13.65 60.35 0.82 -0.19 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 0.31 8.14 -51.92 -0.42 -0.11 16 27 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.10 0.34 8.08 -51.93 -0.42 -0.08 16 29 H 0.20 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.41 7.64 8.29 -40.82 -0.34 7.30 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.39 10.73 7.33 -40.82 -0.30 10.43 16 37 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 325.49 15.07 4.91 4.91 Total: -1.00 -35.16 325.49 -4.74 -39.89 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -5.22 Total: 10.49 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -0.63 Total: 5.28 kcal Atomic # 7 Polarization: -68.94 SS G_CDS: 1.14 Total: -67.80 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.09 Total: -10.61 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.16 -4.74 -39.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483278874.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.710 kcal (2) G-P(sol) polarization free energy of solvation -35.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds