Wall clock time and date at job start Mon Mar 30 2020 00:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46503 * 109.47038 * 2 1 4 4 C 1.34820 * 126.59594 * 125.29199 * 3 2 1 5 5 C 1.36595 * 106.83694 * 180.13669 * 4 3 2 6 6 C 1.47527 * 125.76901 * 179.89961 * 5 4 3 7 7 O 1.21592 * 119.99745 * 359.71335 * 6 5 4 8 8 N 1.34770 * 120.00106 * 179.71168 * 6 5 4 9 9 C 1.46500 * 120.00256 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.46596 * 325.00243 * 9 8 6 11 11 C 1.53006 * 109.47249 * 84.99846 * 9 8 6 12 12 C 1.52997 * 109.47473 * 205.00145 * 9 8 6 13 13 N 1.46503 * 109.46923 * 54.99641 * 12 9 8 14 14 C 1.36937 * 119.99744 * 180.02562 * 13 12 9 15 15 H 1.08000 * 119.99760 * 359.97438 * 14 13 12 16 16 C 1.38810 * 120.00054 * 180.02562 * 14 13 12 17 17 N 1.31623 * 119.99818 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00214 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46699 * 89.99861 * 18 16 14 20 20 H 1.48497 * 109.47375 * 209.99898 * 18 16 14 21 21 H 1.48494 * 109.46940 * 330.00180 * 18 16 14 22 22 N 1.34403 * 108.46015 * 359.62995 * 5 4 3 23 23 N 1.28761 * 109.52378 * 0.23252 * 22 5 4 24 24 H 1.09001 * 109.47216 * 299.99867 * 1 2 3 25 25 H 1.09000 * 109.47276 * 60.00430 * 1 2 3 26 26 H 1.09008 * 109.46909 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47216 * 240.00133 * 2 1 3 28 28 H 1.09000 * 109.47276 * 119.99569 * 2 1 3 29 29 H 1.07997 * 126.57720 * 359.97438 * 4 3 2 30 30 H 0.97005 * 120.00370 * 359.97438 * 8 6 5 31 31 H 1.09001 * 109.47002 * 60.00085 * 11 9 8 32 32 H 1.08993 * 109.46955 * 180.02562 * 11 9 8 33 33 H 1.09000 * 109.47050 * 300.00351 * 11 9 8 34 34 H 1.08993 * 109.47322 * 174.99832 * 12 9 8 35 35 H 1.09002 * 109.47196 * 294.99955 * 12 9 8 36 36 H 0.96994 * 120.00097 * 0.02562 * 13 12 9 37 37 H 0.97001 * 119.99831 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.8757 1.9306 0.8835 5 6 3.0503 3.2324 0.5084 6 6 3.9080 4.2191 1.1918 7 8 4.5326 3.8977 2.1843 8 7 3.9993 5.4768 0.7161 9 6 4.8515 6.4565 1.3944 10 1 4.8249 6.2785 2.4694 11 6 6.2893 6.3179 0.8898 12 6 4.3410 7.8681 1.0984 13 7 2.9279 7.9648 1.4725 14 6 2.2521 9.1427 1.2964 15 1 2.7610 10.0005 0.8822 16 6 0.9132 9.2345 1.6513 17 7 0.2932 8.1891 2.1566 18 14 -0.0085 10.8415 1.4119 19 1 -0.6220 10.8634 0.0596 20 1 -1.0731 10.9596 2.4404 21 1 0.9368 11.9789 1.5450 22 7 2.3132 3.4607 -0.5920 23 7 1.6876 2.3846 -0.9219 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.3343 1.4369 1.7275 30 1 3.5013 5.7331 -0.0760 31 1 6.3159 6.4958 -0.1852 32 1 6.9234 7.0465 1.3949 33 1 6.6530 5.3122 1.1007 34 1 4.9193 8.5915 1.6731 35 1 4.4504 8.0784 0.0345 36 1 2.4710 7.1944 1.8448 37 1 -0.6423 8.2534 2.4050 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483278874.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:20 Heat of formation + Delta-G solvation = 39.517521 kcal Electronic energy + Delta-G solvation = -20036.116369 eV Core-core repulsion = 16849.878705 eV Total energy + Delta-G solvation = -3186.237664 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.19747 -40.56994 -37.67163 -36.34898 -35.44014 -33.13186 -32.33859 -31.83045 -30.68769 -27.41517 -25.56179 -25.12018 -24.32825 -22.70769 -22.06894 -21.23985 -19.38823 -18.87018 -17.37979 -17.27355 -17.12061 -16.63464 -15.92413 -15.71999 -15.45155 -15.25234 -15.12388 -14.97682 -13.96637 -13.78917 -13.62881 -13.50167 -13.34820 -13.07666 -13.03656 -12.77403 -12.63081 -12.55401 -12.14086 -12.03753 -11.87982 -11.68786 -11.30051 -11.19950 -10.94588 -10.38581 -9.98549 -9.00503 -7.93475 -5.23297 0.18012 0.64905 1.16759 1.47574 1.50013 1.58199 2.16379 2.31474 2.56989 3.22377 3.40475 3.43786 3.77863 3.89792 3.98926 4.00424 4.06903 4.29458 4.33305 4.35409 4.52661 4.64771 4.75076 4.83334 4.88242 4.93591 4.96141 5.13637 5.23151 5.33700 5.50793 5.52461 5.56670 6.26872 6.46896 6.93128 7.16924 7.33827 8.08302 8.31518 9.29957 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.016564 B = 0.004990 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.012285 B = 5609.736518 C = 6924.347082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.107 3.893 3 N -0.349 5.349 4 C 0.110 3.890 5 C -0.128 4.128 6 C 0.603 3.397 7 O -0.570 6.570 8 N -0.697 5.697 9 C 0.139 3.861 10 H 0.069 0.931 11 C -0.145 4.145 12 C 0.144 3.856 13 N -0.745 5.745 14 C -0.244 4.244 15 H 0.081 0.919 16 C -0.076 4.076 17 N -0.971 5.971 18 Si 0.976 3.024 19 H -0.288 1.288 20 H -0.298 1.298 21 H -0.266 1.266 22 N -0.230 5.230 23 N -0.092 5.092 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.113 0.887 27 H 0.118 0.882 28 H 0.144 0.856 29 H 0.241 0.759 30 H 0.408 0.592 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.045 0.955 35 H 0.036 0.964 36 H 0.373 0.627 37 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.001 -19.023 -4.276 20.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.011 4.011 3 N -0.134 5.134 4 C -0.048 4.048 5 C -0.268 4.268 6 C 0.389 3.611 7 O -0.450 6.450 8 N -0.346 5.346 9 C 0.034 3.966 10 H 0.087 0.913 11 C -0.204 4.204 12 C 0.017 3.983 13 N -0.388 5.388 14 C -0.376 4.376 15 H 0.099 0.901 16 C -0.268 4.268 17 N -0.622 5.622 18 Si 0.804 3.196 19 H -0.215 1.215 20 H -0.225 1.225 21 H -0.191 1.191 22 N -0.103 5.103 23 N -0.072 5.072 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.132 0.868 27 H 0.136 0.864 28 H 0.162 0.838 29 H 0.257 0.743 30 H 0.244 0.756 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.205 0.795 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.615 -18.749 -4.896 20.476 hybrid contribution -0.821 0.514 0.607 1.143 sum 5.794 -18.235 -4.289 19.608 Atomic orbital electron populations 1.22096 0.93029 1.04979 1.02396 1.22593 0.96707 0.73891 1.07912 1.50990 1.30303 1.13232 1.18891 1.23857 0.92121 0.92848 0.96021 1.21567 1.08839 0.96253 1.00178 1.16970 0.79788 0.81749 0.82625 1.90730 1.47933 1.79803 1.26537 1.45847 1.47384 1.09843 1.31525 1.21231 0.91039 0.87167 0.97133 0.91288 1.22012 0.93507 1.02689 1.02191 1.21164 0.85027 0.93777 0.98309 1.42559 1.07441 1.12223 1.76596 1.19677 0.93067 0.91184 1.33684 0.90108 1.25600 0.98038 1.00792 1.02401 1.69858 1.10610 1.31040 1.50650 0.85109 0.78137 0.79561 0.76752 1.21490 1.22453 1.19079 1.74663 1.05234 1.19046 1.11406 1.81855 1.21027 0.90964 1.13348 0.93119 0.92888 0.86834 0.86379 0.83816 0.74293 0.75637 0.91323 0.89586 0.92449 0.93709 0.94575 0.79537 0.94235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 10.12 71.98 0.73 -1.11 16 2 C 0.11 1.00 7.26 86.38 0.63 1.63 16 3 N -0.35 -7.35 3.69 -347.10 -1.28 -8.63 16 4 C 0.11 2.51 11.27 83.85 0.95 3.45 16 5 C -0.13 -4.18 6.99 40.82 0.29 -3.89 16 6 C 0.60 22.01 7.78 86.69 0.67 22.68 16 7 O -0.57 -22.16 16.53 -4.00 -0.07 -22.23 16 8 N -0.70 -25.60 4.51 -445.71 -2.01 -27.61 16 9 C 0.14 4.88 2.73 44.99 0.12 5.00 16 10 H 0.07 2.70 7.58 -2.39 -0.02 2.69 16 11 C -0.15 -3.90 9.48 71.98 0.68 -3.22 16 12 C 0.14 5.76 5.82 86.38 0.50 6.26 16 13 N -0.75 -38.96 5.43 -343.46 -1.87 -40.82 16 14 C -0.24 -13.91 9.99 84.03 0.84 -13.07 16 15 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 16 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 17 N -0.97 -61.78 13.06 21.65 0.28 -61.50 16 18 Si 0.98 47.30 29.55 68.60 2.03 49.33 16 19 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 20 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 N -0.23 -8.20 12.04 -49.99 -0.60 -8.80 16 23 N -0.09 -2.82 13.65 37.02 0.51 -2.31 16 24 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.11 0.52 8.14 -2.38 -0.02 0.50 16 27 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.14 0.27 8.08 -2.39 -0.02 0.25 16 29 H 0.24 3.40 8.06 -2.91 -0.02 3.38 16 30 H 0.41 15.62 8.29 -92.70 -0.77 14.85 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 34 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.37 21.31 7.33 -92.71 -0.68 20.63 16 37 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -77.98 325.49 2.51 -75.48 By element: Atomic # 1 Polarization: 33.76 SS G_CDS: -0.36 Total: 33.40 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 5.88 Total: 13.70 kcal Atomic # 7 Polarization: -144.70 SS G_CDS: -4.97 Total: -149.68 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.07 Total: -22.23 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -77.98 2.51 -75.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483278874.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.993 kcal (2) G-P(sol) polarization free energy of solvation -77.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds