Wall clock time and date at job start Mon Mar 30 2020 00:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46497 * 109.47292 * 2 1 4 4 C 1.36938 * 120.00347 * 275.31660 * 3 2 1 5 5 H 1.08000 * 120.00063 * 37.57273 * 4 3 2 6 6 C 1.38806 * 120.00048 * 217.58050 * 4 3 2 7 7 N 1.31625 * 120.00471 * 21.41470 * 6 4 3 8 8 Si 1.86799 * 120.00067 * 201.41867 * 6 4 3 9 9 H 1.48500 * 109.47054 * 59.99700 * 8 6 4 10 10 H 1.48505 * 109.47413 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47094 * 299.99901 * 8 6 4 12 12 C 1.46497 * 120.00170 * 95.30828 * 3 2 1 13 13 C 1.52997 * 109.47680 * 270.00737 * 12 3 2 14 14 N 1.46496 * 109.47594 * 179.97438 * 13 12 3 15 15 C 1.34776 * 120.00138 * 179.97438 * 14 13 12 16 16 O 1.21554 * 120.00239 * 0.02562 * 15 14 13 17 17 C 1.47876 * 119.99886 * 179.97438 * 15 14 13 18 18 N 1.34541 * 126.04624 * 0.03352 * 17 15 14 19 19 C 1.30871 * 107.26647 * 179.97438 * 18 17 15 20 20 N 1.34581 * 107.62866 * 359.97438 * 19 18 17 21 21 C 1.46496 * 125.75281 * 179.97438 * 20 19 18 22 22 N 1.28851 * 108.50074 * 359.75307 * 20 19 18 23 23 H 1.09000 * 109.47187 * 299.99680 * 1 2 3 24 24 H 1.09003 * 109.47729 * 59.99934 * 1 2 3 25 25 H 1.09002 * 109.47409 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46932 * 240.00435 * 2 1 3 27 27 H 1.08996 * 109.47758 * 120.00474 * 2 1 3 28 28 H 0.96995 * 120.00299 * 180.02562 * 7 6 4 29 29 H 1.08999 * 109.47673 * 150.00083 * 12 3 2 30 30 H 1.09007 * 109.47111 * 30.00661 * 12 3 2 31 31 H 1.08999 * 109.47101 * 59.98996 * 13 12 3 32 32 H 1.09007 * 109.46787 * 300.00123 * 13 12 3 33 33 H 0.97002 * 119.99757 * 0.02562 * 14 13 12 34 34 H 1.08002 * 126.19094 * 180.02562 * 19 18 17 35 35 H 1.09001 * 109.46892 * 90.00507 * 21 20 19 36 36 H 1.08997 * 109.47299 * 209.99869 * 21 20 19 37 37 H 1.08996 * 109.47222 * 330.00338 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1430 2.0634 -1.1808 5 1 1.4104 1.9279 -1.9627 6 6 3.2110 2.9289 -1.3728 7 7 4.3026 2.7981 -0.6490 8 14 3.0992 4.2795 -2.6585 9 1 1.9626 5.1785 -2.3344 10 1 4.3617 5.0615 -2.6661 11 1 2.8843 3.6726 -3.9966 12 6 2.3731 2.0327 1.2632 13 6 1.1426 2.7382 1.8367 14 7 1.4973 3.3891 3.1002 15 6 0.5649 4.0765 3.7892 16 8 -0.5705 4.1559 3.3624 17 6 0.9229 4.7331 5.0649 18 7 2.1357 4.7234 5.6472 19 6 2.0403 5.4139 6.7548 20 7 0.7709 5.8495 6.8555 21 6 0.2288 6.6620 7.9474 22 7 0.1138 5.4353 5.8275 23 1 -0.3633 0.5138 0.8900 24 1 -0.3635 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8932 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 5.0488 3.4032 -0.7830 29 1 3.1616 2.7641 1.0860 30 1 2.7255 1.2833 1.9721 31 1 0.3541 2.0067 2.0139 32 1 0.7902 3.4875 1.1278 33 1 2.4034 3.3261 3.4406 34 1 2.8365 5.6012 7.4602 35 1 0.3472 7.7186 7.7073 36 1 -0.8293 6.4355 8.0781 37 1 0.7652 6.4365 8.8690 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492947156.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:17 Heat of formation + Delta-G solvation = 79.060627 kcal Electronic energy + Delta-G solvation = -20043.435450 eV Core-core repulsion = 16858.912505 eV Total energy + Delta-G solvation = -3184.522946 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.49210 -38.99058 -36.24730 -34.73191 -33.99425 -31.83599 -31.81863 -29.77185 -28.32589 -27.15470 -24.50847 -23.64737 -22.42163 -21.44786 -20.38681 -20.04054 -18.10635 -16.88650 -16.68605 -16.24011 -15.72460 -15.08661 -14.72186 -14.60835 -13.89044 -13.72496 -13.60368 -13.42775 -13.30286 -12.56441 -12.33108 -12.04000 -11.98312 -11.47357 -11.07189 -10.70489 -10.60889 -10.53321 -10.51005 -10.48205 -10.07573 -9.92744 -9.82304 -9.64234 -9.62981 -8.52341 -8.39194 -6.57685 -5.78537 -3.37516 1.39877 2.06671 2.10325 3.34636 3.41908 3.45791 3.50192 3.62768 4.08631 4.22209 4.50990 4.63096 4.69622 4.90335 5.02013 5.33522 5.60244 5.90382 6.04721 6.16311 6.21548 6.22453 6.34709 6.43665 6.47293 6.56718 6.74048 6.89248 6.96606 7.07145 7.21866 7.60390 7.79323 7.85113 8.09461 8.52563 8.57063 9.19438 9.81509 10.39569 11.21551 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.021825 B = 0.004439 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.642089 B = 6306.630508 C = 6921.722478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.141 3.859 3 N -0.579 5.579 4 C -0.263 4.263 5 H 0.061 0.939 6 C 0.015 3.985 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.290 1.290 11 H -0.280 1.280 12 C 0.138 3.862 13 C 0.098 3.902 14 N -0.696 5.696 15 C 0.605 3.395 16 O -0.527 6.527 17 C 0.151 3.849 18 N -0.482 5.482 19 C 0.187 3.813 20 N -0.310 5.310 21 C 0.087 3.913 22 N -0.258 5.258 23 H 0.045 0.955 24 H 0.050 0.950 25 H 0.036 0.964 26 H 0.046 0.954 27 H 0.035 0.965 28 H 0.256 0.744 29 H 0.100 0.900 30 H 0.031 0.969 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.407 0.593 34 H 0.226 0.774 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.053 5.377 18.306 19.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.393 4.393 5 H 0.079 0.921 6 C -0.186 4.186 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.216 1.216 11 H -0.206 1.206 12 C 0.010 3.990 13 C -0.027 4.027 14 N -0.347 5.347 15 C 0.386 3.614 16 O -0.401 6.401 17 C -0.129 4.129 18 N -0.207 5.207 19 C -0.109 4.109 20 N -0.106 5.106 21 C -0.054 4.054 22 N -0.096 5.096 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.117 0.883 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.242 0.758 34 H 0.242 0.758 35 H 0.107 0.893 36 H 0.117 0.883 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.078 5.420 17.636 18.896 hybrid contribution 0.515 1.040 0.001 1.161 sum -3.562 6.460 17.637 19.118 Atomic orbital electron populations 1.22396 0.99933 0.99070 1.01435 1.20880 0.91752 0.86964 0.98914 1.43602 1.76054 1.08266 1.02046 1.18981 1.04808 1.21490 0.94003 0.92101 1.25178 0.94144 1.01144 0.98098 1.69984 1.03138 1.37262 1.42430 0.86476 0.76984 0.82379 0.81610 1.20769 1.21594 1.20626 1.21057 0.94438 0.97059 0.86420 1.22592 1.01426 0.96610 0.82099 1.45870 1.13272 1.51637 1.23925 1.16365 0.85256 0.78970 0.80826 1.90808 1.20011 1.60984 1.68317 1.24023 0.87125 1.02453 0.99322 1.71307 1.22738 1.19899 1.06778 1.26497 0.88810 0.97451 0.98108 1.47393 1.08638 1.37501 1.17046 1.22206 1.02288 0.94865 0.86016 1.74359 1.23848 1.14075 0.97367 0.93619 0.93103 0.94475 0.93576 0.94680 0.93436 0.88276 0.95076 0.92629 0.91378 0.75764 0.75808 0.89257 0.88280 0.88082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.20 10.21 37.15 0.38 -2.83 16 2 C 0.14 3.01 6.44 -4.05 -0.03 2.99 16 3 N -0.58 -14.38 2.43 -173.25 -0.42 -14.80 16 4 C -0.26 -7.19 9.45 -15.06 -0.14 -7.33 16 5 H 0.06 1.67 7.92 -52.49 -0.42 1.25 16 6 C 0.01 0.41 4.95 -17.43 -0.09 0.32 16 7 N -0.89 -25.14 11.47 55.49 0.64 -24.50 16 8 Si 0.90 21.77 29.60 -169.99 -5.03 16.74 16 9 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.14 3.17 5.45 -4.04 -0.02 3.15 16 13 C 0.10 2.09 6.00 -4.05 -0.02 2.07 16 14 N -0.70 -13.29 5.55 -61.24 -0.34 -13.63 16 15 C 0.61 12.07 7.83 -12.32 -0.10 11.97 16 16 O -0.53 -12.16 17.09 5.32 0.09 -12.07 16 17 C 0.15 2.60 7.96 -156.36 -1.24 1.35 16 18 N -0.48 -6.98 11.09 -12.36 -0.14 -7.12 16 19 C 0.19 1.82 12.62 -90.48 -1.14 0.68 16 20 N -0.31 -3.18 3.72 -69.40 -0.26 -3.44 16 21 C 0.09 0.36 11.38 59.84 0.68 1.04 16 22 N -0.26 -4.02 12.08 32.07 0.39 -3.63 16 23 H 0.04 0.87 6.64 -51.93 -0.34 0.53 16 24 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 1.00 8.08 -51.92 -0.42 0.58 16 27 H 0.03 0.70 7.83 -51.93 -0.41 0.29 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.10 2.56 5.52 -51.93 -0.29 2.27 16 30 H 0.03 0.67 7.86 -51.93 -0.41 0.26 16 31 H 0.06 1.19 6.64 -51.93 -0.34 0.85 16 32 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 33 H 0.41 7.10 8.18 -40.82 -0.33 6.77 16 34 H 0.23 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.10 0.06 8.14 -51.93 -0.42 -0.36 16 LS Contribution 320.53 15.07 4.83 4.83 Total: -1.00 -35.24 320.53 -7.02 -42.27 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -5.05 Total: 1.95 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: -1.72 Total: 13.42 kcal Atomic # 7 Polarization: -67.00 SS G_CDS: -0.13 Total: -67.13 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.09 Total: -12.07 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -35.24 -7.02 -42.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492947156.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.326 kcal (2) G-P(sol) polarization free energy of solvation -35.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds