Wall clock time and date at job start Mon Mar 30 2020 00:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46497 * 109.47292 * 2 1 4 4 C 1.36938 * 120.00347 * 275.31660 * 3 2 1 5 5 H 1.08000 * 120.00063 * 37.57273 * 4 3 2 6 6 C 1.38806 * 120.00048 * 217.58050 * 4 3 2 7 7 N 1.31625 * 120.00471 * 21.41470 * 6 4 3 8 8 Si 1.86799 * 120.00067 * 201.41867 * 6 4 3 9 9 H 1.48500 * 109.47054 * 59.99700 * 8 6 4 10 10 H 1.48505 * 109.47413 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47094 * 299.99901 * 8 6 4 12 12 C 1.46497 * 120.00170 * 95.30828 * 3 2 1 13 13 C 1.52997 * 109.47680 * 270.00737 * 12 3 2 14 14 N 1.46496 * 109.47594 * 179.97438 * 13 12 3 15 15 C 1.34776 * 120.00138 * 179.97438 * 14 13 12 16 16 O 1.21554 * 120.00239 * 0.02562 * 15 14 13 17 17 C 1.47876 * 119.99886 * 179.97438 * 15 14 13 18 18 N 1.34541 * 126.04624 * 0.03352 * 17 15 14 19 19 C 1.30871 * 107.26647 * 179.97438 * 18 17 15 20 20 N 1.34581 * 107.62866 * 359.97438 * 19 18 17 21 21 C 1.46496 * 125.75281 * 179.97438 * 20 19 18 22 22 N 1.28851 * 108.50074 * 359.75307 * 20 19 18 23 23 H 1.09000 * 109.47187 * 299.99680 * 1 2 3 24 24 H 1.09003 * 109.47729 * 59.99934 * 1 2 3 25 25 H 1.09002 * 109.47409 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46932 * 240.00435 * 2 1 3 27 27 H 1.08996 * 109.47758 * 120.00474 * 2 1 3 28 28 H 0.96995 * 120.00299 * 180.02562 * 7 6 4 29 29 H 1.08999 * 109.47673 * 150.00083 * 12 3 2 30 30 H 1.09007 * 109.47111 * 30.00661 * 12 3 2 31 31 H 1.08999 * 109.47101 * 59.98996 * 13 12 3 32 32 H 1.09007 * 109.46787 * 300.00123 * 13 12 3 33 33 H 0.97002 * 119.99757 * 0.02562 * 14 13 12 34 34 H 1.08002 * 126.19094 * 180.02562 * 19 18 17 35 35 H 1.09001 * 109.46892 * 90.00507 * 21 20 19 36 36 H 1.08997 * 109.47299 * 209.99869 * 21 20 19 37 37 H 1.08996 * 109.47222 * 330.00338 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1430 2.0634 -1.1808 5 1 1.4104 1.9279 -1.9627 6 6 3.2110 2.9289 -1.3728 7 7 4.3026 2.7981 -0.6490 8 14 3.0992 4.2795 -2.6585 9 1 1.9626 5.1785 -2.3344 10 1 4.3617 5.0615 -2.6661 11 1 2.8843 3.6726 -3.9966 12 6 2.3731 2.0327 1.2632 13 6 1.1426 2.7382 1.8367 14 7 1.4973 3.3891 3.1002 15 6 0.5649 4.0765 3.7892 16 8 -0.5705 4.1559 3.3624 17 6 0.9229 4.7331 5.0649 18 7 2.1357 4.7234 5.6472 19 6 2.0403 5.4139 6.7548 20 7 0.7709 5.8495 6.8555 21 6 0.2288 6.6620 7.9474 22 7 0.1138 5.4353 5.8275 23 1 -0.3633 0.5138 0.8900 24 1 -0.3635 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8932 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 5.0488 3.4032 -0.7830 29 1 3.1616 2.7641 1.0860 30 1 2.7255 1.2833 1.9721 31 1 0.3541 2.0067 2.0139 32 1 0.7902 3.4875 1.1278 33 1 2.4034 3.3261 3.4406 34 1 2.8365 5.6012 7.4602 35 1 0.3472 7.7186 7.7073 36 1 -0.8293 6.4355 8.0781 37 1 0.7652 6.4365 8.8690 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001492947156.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:16 Heat of formation + Delta-G solvation = 54.166993 kcal Electronic energy + Delta-G solvation = -20044.514919 eV Core-core repulsion = 16858.912505 eV Total energy + Delta-G solvation = -3185.602415 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.44877 -40.58170 -38.10298 -35.85452 -35.39996 -33.82053 -32.79775 -31.45219 -29.73645 -28.35951 -26.26210 -25.01200 -23.55662 -22.80831 -22.15282 -21.54489 -19.35949 -18.45979 -17.79832 -17.36120 -17.19463 -16.95299 -16.33522 -15.84196 -15.62935 -15.35830 -15.01582 -14.47671 -14.09785 -13.99636 -13.91567 -13.74370 -13.23223 -13.00234 -12.85842 -12.60873 -12.41314 -12.30290 -12.03185 -11.69926 -11.61399 -11.54369 -11.46335 -11.35867 -10.62713 -10.52933 -10.09226 -8.59382 -7.84923 -5.48083 0.27270 1.12442 1.30108 1.45160 1.49086 1.54845 2.07124 2.23222 2.50839 3.09125 3.23575 3.47274 3.79209 3.90266 4.30101 4.33958 4.39883 4.43665 4.48464 4.69404 4.70934 4.81855 4.83329 4.86269 5.09980 5.17735 5.29533 5.30707 5.33337 5.58363 5.64768 5.67720 5.74594 6.36188 6.47386 6.93200 7.09119 7.16122 7.83202 8.35822 9.11217 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.021825 B = 0.004439 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.642089 B = 6306.630508 C = 6921.722478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.136 3.864 3 N -0.596 5.596 4 C -0.274 4.274 5 H 0.054 0.946 6 C -0.027 4.027 7 N -0.910 5.910 8 Si 0.951 3.049 9 H -0.287 1.287 10 H -0.288 1.288 11 H -0.272 1.272 12 C 0.147 3.853 13 C 0.119 3.881 14 N -0.689 5.689 15 C 0.604 3.396 16 O -0.569 6.569 17 C 0.118 3.882 18 N -0.511 5.511 19 C 0.208 3.792 20 N -0.300 5.300 21 C 0.074 3.926 22 N -0.283 5.283 23 H 0.040 0.960 24 H 0.035 0.965 25 H 0.070 0.930 26 H 0.039 0.961 27 H 0.052 0.948 28 H 0.254 0.746 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.036 0.964 33 H 0.416 0.584 34 H 0.285 0.715 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.654 5.994 20.610 21.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.011 3.989 3 N -0.318 5.318 4 C -0.405 4.405 5 H 0.072 0.928 6 C -0.225 4.225 7 N -0.553 5.553 8 Si 0.779 3.221 9 H -0.214 1.214 10 H -0.214 1.214 11 H -0.198 1.198 12 C 0.019 3.981 13 C -0.007 4.007 14 N -0.340 5.340 15 C 0.387 3.613 16 O -0.447 6.447 17 C -0.160 4.160 18 N -0.238 5.238 19 C -0.087 4.087 20 N -0.095 5.095 21 C -0.064 4.064 22 N -0.125 5.125 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.088 0.912 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.253 0.747 34 H 0.300 0.700 35 H 0.125 0.875 36 H 0.115 0.885 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.671 6.033 19.974 21.185 hybrid contribution 0.380 0.890 -0.534 1.105 sum -3.291 6.923 19.440 20.897 Atomic orbital electron populations 1.22227 0.97967 1.00913 1.00424 1.21024 0.93183 0.85307 0.99379 1.43839 1.76396 1.09678 1.01845 1.19159 1.04495 1.22057 0.94761 0.92833 1.25770 0.93964 1.02769 1.00033 1.70079 1.03532 1.37878 1.43800 0.85613 0.76530 0.79958 0.79998 1.21377 1.21374 1.19757 1.20893 0.94075 0.96806 0.86307 1.22123 1.00544 0.95549 0.82460 1.45677 1.13748 1.51503 1.23088 1.16728 0.84514 0.78315 0.81716 1.90762 1.21592 1.62509 1.69799 1.23332 0.88802 1.04715 0.99186 1.71227 1.21888 1.21876 1.08765 1.27563 0.89496 0.94557 0.97038 1.47860 1.08787 1.36528 1.16373 1.22787 1.02878 0.94984 0.85759 1.74248 1.25098 1.14302 0.98821 0.94092 0.94584 0.91154 0.94279 0.92963 0.93657 0.90856 0.93517 0.92569 0.94548 0.74718 0.69983 0.87549 0.88519 0.83512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.78 10.21 71.98 0.73 -5.04 16 2 C 0.14 5.75 6.44 86.38 0.56 6.30 16 3 N -0.60 -29.92 2.43 -702.03 -1.71 -31.63 16 4 C -0.27 -15.23 9.45 84.03 0.79 -14.44 16 5 H 0.05 2.99 7.92 -2.91 -0.02 2.97 16 6 C -0.03 -1.51 4.95 84.86 0.42 -1.09 16 7 N -0.91 -52.31 11.47 21.65 0.25 -52.06 16 8 Si 0.95 45.34 29.60 68.60 2.03 47.37 16 9 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 10 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 11 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 12 C 0.15 6.85 5.45 86.38 0.47 7.33 16 13 C 0.12 5.26 6.00 86.38 0.52 5.77 16 14 N -0.69 -27.04 5.55 -465.94 -2.59 -29.63 16 15 C 0.60 24.86 7.83 86.80 0.68 25.54 16 16 O -0.57 -27.38 17.09 -3.89 -0.07 -27.45 16 17 C 0.12 4.07 7.96 137.13 1.09 5.17 16 18 N -0.51 -14.09 11.09 -193.03 -2.14 -16.23 16 19 C 0.21 3.31 12.62 180.30 2.27 5.59 16 20 N -0.30 -5.32 3.72 -373.48 -1.39 -6.71 16 21 C 0.07 0.33 11.38 127.77 1.45 1.78 16 22 N -0.28 -8.63 12.08 -52.44 -0.63 -9.26 16 23 H 0.04 1.54 6.64 -2.39 -0.02 1.52 16 24 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.04 1.68 8.08 -2.38 -0.02 1.66 16 27 H 0.05 2.01 7.83 -2.39 -0.02 1.99 16 28 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 29 H 0.07 3.88 5.52 -2.39 -0.01 3.87 16 30 H 0.05 2.01 7.86 -2.38 -0.02 1.99 16 31 H 0.06 2.47 6.64 -2.39 -0.02 2.45 16 32 H 0.04 1.82 8.14 -2.38 -0.02 1.81 16 33 H 0.42 14.79 8.18 -92.71 -0.76 14.03 16 34 H 0.28 0.58 8.06 -2.91 -0.02 0.56 16 35 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 36 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.15 -0.64 8.14 -2.39 -0.02 -0.66 16 Total: -1.00 -79.79 320.53 3.07 -76.72 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 0.33 Total: 11.96 kcal Atomic # 6 Polarization: 27.92 SS G_CDS: 8.99 Total: 36.92 kcal Atomic # 7 Polarization: -137.31 SS G_CDS: -8.21 Total: -145.52 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.07 Total: -27.45 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -79.79 3.07 -76.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492947156.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.889 kcal (2) G-P(sol) polarization free energy of solvation -79.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds