Wall clock time and date at job start Mon Mar 30 2020 00:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46497 * 120.00322 * 2 1 4 4 C 1.53006 * 109.46992 * 269.99874 * 3 2 1 5 5 N 1.46505 * 109.46992 * 179.97438 * 4 3 2 6 6 C 1.36933 * 119.99754 * 179.97438 * 5 4 3 7 7 H 1.08004 * 120.00478 * 0.02562 * 6 5 4 8 8 C 1.38809 * 119.99910 * 179.97438 * 6 5 4 9 9 N 1.31621 * 120.00284 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 120.00159 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46984 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47093 * 120.00322 * 10 8 6 13 13 H 1.48502 * 109.47054 * 240.00528 * 10 8 6 14 14 C 1.34780 * 120.00111 * 179.97438 * 2 1 3 15 15 O 1.21280 * 120.00423 * 179.97438 * 14 2 1 16 16 C 1.50701 * 119.99795 * 0.02562 * 14 2 1 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 2 18 18 C 1.50697 * 109.47466 * 179.97438 * 17 16 14 19 19 N 1.33239 * 125.52653 * 269.69447 * 18 17 16 20 20 C 1.30836 * 109.82717 * 179.84952 * 19 18 17 21 21 N 1.34427 * 108.07754 * 0.41013 * 20 19 18 22 22 H 0.97001 * 126.82706 * 179.79035 * 21 20 19 23 23 N 1.30717 * 125.52380 * 89.99959 * 18 17 16 24 24 H 1.08995 * 109.47620 * 270.00337 * 1 2 3 25 25 H 1.09006 * 109.47028 * 30.00444 * 1 2 3 26 26 H 1.09002 * 109.47109 * 150.00022 * 1 2 3 27 27 H 1.09000 * 109.47018 * 29.99405 * 3 2 1 28 28 H 1.09000 * 109.47828 * 149.99700 * 3 2 1 29 29 H 1.09000 * 109.46856 * 299.99630 * 4 3 2 30 30 H 1.09002 * 109.47088 * 59.99836 * 4 3 2 31 31 H 0.97002 * 119.99939 * 359.97438 * 5 4 3 32 32 H 0.96998 * 120.00644 * 179.97438 * 9 8 6 33 33 H 1.09002 * 109.47060 * 299.99722 * 16 14 2 34 34 H 1.09001 * 109.47380 * 59.99809 * 16 14 2 35 35 H 1.09002 * 109.47153 * 299.99998 * 17 16 14 36 36 H 1.08998 * 109.47533 * 59.99628 * 17 16 14 37 37 H 1.08001 * 125.96084 * 180.12048 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4426 5 7 3.1846 2.9793 -1.4426 6 6 3.5273 3.5720 -2.6285 7 1 3.2576 3.1042 -3.5638 8 6 4.2204 4.7746 -2.6285 9 7 4.5487 5.3451 -1.4887 10 14 4.6874 5.5835 -4.2463 11 1 4.2053 4.7475 -5.3750 12 1 4.0633 6.9287 -4.3254 13 1 6.1643 5.7176 -4.3245 14 6 2.1388 -1.1672 0.0005 15 8 3.3516 -1.1673 0.0001 16 6 1.3853 -2.4723 0.0005 17 6 2.3795 -3.6352 0.0005 18 6 1.6260 -4.9403 0.0012 19 7 1.2443 -5.6134 1.0858 20 6 0.6100 -6.7018 0.7324 21 7 0.5815 -6.7504 -0.6107 22 1 0.1810 -7.4431 -1.1591 23 7 1.2459 -5.5984 -1.0624 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6084 2.0283 0.5137 28 1 3.1499 1.1384 0.5139 29 1 3.0416 0.9506 -1.9563 30 1 1.5001 1.8406 -1.9564 31 1 3.4265 3.3997 -0.6025 32 1 5.0334 6.1853 -1.4886 33 1 0.7583 -2.5299 0.8903 34 1 0.7589 -2.5303 -0.8897 35 1 3.0062 -3.5775 -0.8895 36 1 3.0062 -3.5776 0.8904 37 1 0.1875 -7.4357 1.4027 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493515980.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:39 Heat of formation + Delta-G solvation = 62.710529 kcal Electronic energy + Delta-G solvation = -19401.267738 eV Core-core repulsion = 16216.035798 eV Total energy + Delta-G solvation = -3185.231939 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.42452 -39.75688 -35.96960 -34.48787 -34.23503 -32.32343 -31.47630 -30.72157 -28.29169 -26.59405 -25.28451 -23.39706 -22.97930 -21.42404 -20.40117 -18.96867 -18.68004 -17.16059 -16.91929 -16.11149 -15.91327 -15.50164 -15.25151 -14.55849 -14.04651 -13.86170 -13.38596 -13.12917 -13.05674 -12.69180 -12.67526 -12.51545 -12.43625 -12.05271 -11.35072 -11.15580 -10.94996 -10.84301 -10.63700 -10.43711 -10.35900 -10.04823 -10.02749 -9.74162 -9.55208 -8.83135 -8.44350 -6.88178 -5.71734 -3.00709 1.26083 2.31382 2.53330 2.79864 3.16079 3.47482 3.52942 3.55455 3.80686 4.33119 4.56315 4.65622 4.75331 4.90693 5.00885 5.14341 5.38267 5.40665 5.56697 5.68475 5.72287 5.75842 5.82544 5.90376 5.92132 6.09376 6.14594 6.19564 6.61539 6.65572 6.80246 6.97575 7.55731 7.74830 7.75326 8.34710 8.47024 9.57796 10.14468 10.49594 11.51348 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.039238 B = 0.002940 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.416868 B = 9520.721192 C = 9774.167326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.612 5.612 3 C 0.107 3.893 4 C 0.143 3.857 5 N -0.731 5.731 6 C -0.236 4.236 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.291 1.291 14 C 0.512 3.488 15 O -0.532 6.532 16 C -0.129 4.129 17 C -0.013 4.013 18 C 0.234 3.766 19 N -0.540 5.540 20 C 0.259 3.741 21 N -0.488 5.488 22 H 0.441 0.559 23 N -0.312 5.312 24 H 0.055 0.945 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.023 0.977 30 H 0.017 0.983 31 H 0.384 0.616 32 H 0.255 0.745 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.755 -24.494 6.013 28.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.346 5.346 3 C -0.015 4.015 4 C 0.014 3.986 5 N -0.376 5.376 6 C -0.367 4.367 7 H 0.088 0.912 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.218 1.218 14 C 0.300 3.700 15 O -0.408 6.408 16 C -0.171 4.171 17 C -0.054 4.054 18 C -0.048 4.048 19 N -0.268 5.268 20 C -0.040 4.040 21 N -0.206 5.206 22 H 0.287 0.713 23 N -0.141 5.141 24 H 0.074 0.926 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.041 0.959 30 H 0.035 0.965 31 H 0.217 0.783 32 H 0.064 0.936 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -12.863 -24.082 5.469 27.844 hybrid contribution -0.271 -0.094 -0.834 0.882 sum -13.134 -24.176 4.635 27.901 Atomic orbital electron populations 1.21812 0.79733 1.03387 1.01655 1.47803 1.06909 1.06385 1.73504 1.21710 0.97519 0.83195 0.99105 1.20913 0.95050 0.89368 0.93261 1.42227 1.67118 1.21618 1.06590 1.19258 1.29221 1.02233 0.86002 0.91155 1.24752 1.01352 0.98080 0.96925 1.69671 1.45174 1.19533 1.23884 0.86091 0.77923 0.79111 0.82931 1.20563 1.21879 1.21812 1.20455 0.88049 0.85145 0.76359 1.90745 1.13773 1.87226 1.49093 1.21579 0.99079 0.91737 1.04658 1.19701 0.95559 0.84006 1.06100 1.24365 0.97333 0.97816 0.85331 1.70465 1.18336 1.06598 1.31444 1.26141 0.96282 0.97024 0.84547 1.48170 1.44891 1.20379 1.07118 0.71345 1.78088 1.16676 0.96789 1.22541 0.92602 0.90548 0.91311 0.90520 0.89622 0.95881 0.96503 0.78260 0.93554 0.88527 0.88725 0.88427 0.88027 0.76137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 10.24 59.84 0.61 1.39 16 2 N -0.61 -8.83 2.87 -181.58 -0.52 -9.35 16 3 C 0.11 1.90 5.52 -4.04 -0.02 1.87 16 4 C 0.14 3.10 6.58 -4.04 -0.03 3.08 16 5 N -0.73 -19.54 5.60 -59.90 -0.34 -19.88 16 6 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 7 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 8 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 9 N -0.93 -29.04 13.06 55.49 0.72 -28.32 16 10 Si 0.91 23.08 29.55 -169.99 -5.02 18.05 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 13 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 14 C 0.51 7.71 7.67 -10.98 -0.08 7.62 16 15 O -0.53 -10.25 15.56 5.56 0.09 -10.17 16 16 C -0.13 -1.41 4.23 -27.88 -0.12 -1.53 16 17 C -0.01 -0.16 5.13 -27.89 -0.14 -0.30 16 18 C 0.23 2.66 7.39 -156.85 -1.16 1.50 16 19 N -0.54 -5.62 11.19 -11.98 -0.13 -5.75 16 20 C 0.26 1.59 13.13 -90.65 -1.19 0.40 16 21 N -0.49 -3.18 7.45 29.53 0.22 -2.96 16 22 H 0.44 1.17 8.96 -182.33 -1.63 -0.47 16 23 N -0.31 -3.43 12.80 32.42 0.41 -3.02 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.77 8.07 -51.93 -0.42 0.35 16 26 H 0.07 0.55 6.44 -51.93 -0.33 0.21 16 27 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 28 H 0.09 1.68 7.42 -51.93 -0.39 1.29 16 29 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.38 10.62 7.67 -40.82 -0.31 10.31 16 32 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.10 0.90 8.11 -51.93 -0.42 0.48 16 34 H 0.09 0.93 7.40 -51.93 -0.38 0.54 16 35 H 0.10 1.22 8.10 -51.93 -0.42 0.80 16 36 H 0.10 1.23 8.10 -51.93 -0.42 0.81 16 37 H 0.22 0.18 8.06 -52.49 -0.42 -0.24 16 LS Contribution 321.77 15.07 4.85 4.85 Total: -1.00 -38.22 321.77 -8.49 -46.71 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.39 Total: 3.40 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -2.38 Total: 6.43 kcal Atomic # 7 Polarization: -69.64 SS G_CDS: 0.37 Total: -69.27 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -38.22 -8.49 -46.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493515980.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.416 kcal (2) G-P(sol) polarization free energy of solvation -38.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds