Wall clock time and date at job start Mon Mar 30 2020 00:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46497 * 120.00322 * 2 1 4 4 C 1.53006 * 109.46992 * 269.99874 * 3 2 1 5 5 N 1.46505 * 109.46992 * 179.97438 * 4 3 2 6 6 C 1.36933 * 119.99754 * 179.97438 * 5 4 3 7 7 H 1.08004 * 120.00478 * 0.02562 * 6 5 4 8 8 C 1.38809 * 119.99910 * 179.97438 * 6 5 4 9 9 N 1.31621 * 120.00284 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 120.00159 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46984 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47093 * 120.00322 * 10 8 6 13 13 H 1.48502 * 109.47054 * 240.00528 * 10 8 6 14 14 C 1.34780 * 120.00111 * 179.97438 * 2 1 3 15 15 O 1.21280 * 120.00423 * 179.97438 * 14 2 1 16 16 C 1.50701 * 119.99795 * 0.02562 * 14 2 1 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 2 18 18 C 1.50697 * 109.47466 * 179.97438 * 17 16 14 19 19 N 1.33239 * 125.52653 * 269.69447 * 18 17 16 20 20 C 1.30836 * 109.82717 * 179.84952 * 19 18 17 21 21 N 1.34427 * 108.07754 * 0.41013 * 20 19 18 22 22 H 0.97001 * 126.82706 * 179.79035 * 21 20 19 23 23 N 1.30717 * 125.52380 * 89.99959 * 18 17 16 24 24 H 1.08995 * 109.47620 * 270.00337 * 1 2 3 25 25 H 1.09006 * 109.47028 * 30.00444 * 1 2 3 26 26 H 1.09002 * 109.47109 * 150.00022 * 1 2 3 27 27 H 1.09000 * 109.47018 * 29.99405 * 3 2 1 28 28 H 1.09000 * 109.47828 * 149.99700 * 3 2 1 29 29 H 1.09000 * 109.46856 * 299.99630 * 4 3 2 30 30 H 1.09002 * 109.47088 * 59.99836 * 4 3 2 31 31 H 0.97002 * 119.99939 * 359.97438 * 5 4 3 32 32 H 0.96998 * 120.00644 * 179.97438 * 9 8 6 33 33 H 1.09002 * 109.47060 * 299.99722 * 16 14 2 34 34 H 1.09001 * 109.47380 * 59.99809 * 16 14 2 35 35 H 1.09002 * 109.47153 * 299.99998 * 17 16 14 36 36 H 1.08998 * 109.47533 * 59.99628 * 17 16 14 37 37 H 1.08001 * 125.96084 * 180.12048 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4426 5 7 3.1846 2.9793 -1.4426 6 6 3.5273 3.5720 -2.6285 7 1 3.2576 3.1042 -3.5638 8 6 4.2204 4.7746 -2.6285 9 7 4.5487 5.3451 -1.4887 10 14 4.6874 5.5835 -4.2463 11 1 4.2053 4.7475 -5.3750 12 1 4.0633 6.9287 -4.3254 13 1 6.1643 5.7176 -4.3245 14 6 2.1388 -1.1672 0.0005 15 8 3.3516 -1.1673 0.0001 16 6 1.3853 -2.4723 0.0005 17 6 2.3795 -3.6352 0.0005 18 6 1.6260 -4.9403 0.0012 19 7 1.2443 -5.6134 1.0858 20 6 0.6100 -6.7018 0.7324 21 7 0.5815 -6.7504 -0.6107 22 1 0.1810 -7.4431 -1.1591 23 7 1.2459 -5.5984 -1.0624 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6084 2.0283 0.5137 28 1 3.1499 1.1384 0.5139 29 1 3.0416 0.9506 -1.9563 30 1 1.5001 1.8406 -1.9564 31 1 3.4265 3.3997 -0.6025 32 1 5.0334 6.1853 -1.4886 33 1 0.7583 -2.5299 0.8903 34 1 0.7589 -2.5303 -0.8897 35 1 3.0062 -3.5775 -0.8895 36 1 3.0062 -3.5776 0.8904 37 1 0.1875 -7.4357 1.4027 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493515980.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:37 Heat of formation + Delta-G solvation = 34.690134 kcal Electronic energy + Delta-G solvation = -19402.482793 eV Core-core repulsion = 16216.035798 eV Total energy + Delta-G solvation = -3186.446995 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -43.05970 -40.97223 -37.46039 -36.06487 -35.30877 -33.45684 -32.92826 -31.66304 -29.88524 -27.58288 -26.65998 -25.07489 -23.63781 -23.09571 -21.19528 -20.17909 -19.26799 -19.16541 -18.06047 -17.31748 -16.93393 -16.58218 -16.24610 -16.04320 -15.41115 -15.35059 -15.08558 -14.55139 -14.42381 -13.86166 -13.70703 -13.41572 -13.08859 -13.07530 -13.05261 -12.87295 -12.70584 -12.31322 -12.16291 -12.08952 -11.87696 -11.09889 -11.04256 -10.99925 -10.91134 -10.63413 -9.68138 -9.07259 -7.98523 -5.29408 0.66428 1.45687 1.47934 1.57874 1.62073 1.77126 1.87450 2.08466 2.55483 3.15442 3.34708 3.60351 3.74360 3.97376 4.06816 4.12943 4.22019 4.25306 4.33782 4.36687 4.56046 4.58236 4.74564 4.91027 4.95864 4.99241 5.03385 5.10638 5.26667 5.37204 5.42451 5.54684 6.23257 6.29346 6.41599 7.12613 7.17415 7.29184 8.00939 8.26526 9.25142 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.039238 B = 0.002940 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.416868 B = 9520.721192 C = 9774.167326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.611 5.611 3 C 0.121 3.879 4 C 0.149 3.851 5 N -0.744 5.744 6 C -0.250 4.250 7 H 0.073 0.927 8 C -0.074 4.074 9 N -0.968 5.968 10 Si 0.979 3.021 11 H -0.267 1.267 12 H -0.287 1.287 13 H -0.292 1.292 14 C 0.506 3.494 15 O -0.584 6.584 16 C -0.111 4.111 17 C -0.010 4.010 18 C 0.224 3.776 19 N -0.578 5.578 20 C 0.278 3.722 21 N -0.476 5.476 22 H 0.458 0.542 23 N -0.346 5.346 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.060 0.940 29 H -0.001 1.001 30 H 0.030 0.970 31 H 0.376 0.624 32 H 0.254 0.746 33 H 0.120 0.880 34 H 0.112 0.888 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.097 -26.107 5.825 31.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.344 5.344 3 C -0.003 4.003 4 C 0.021 3.979 5 N -0.387 5.387 6 C -0.381 4.381 7 H 0.091 0.909 8 C -0.267 4.267 9 N -0.619 5.619 10 Si 0.807 3.193 11 H -0.191 1.191 12 H -0.213 1.213 13 H -0.219 1.219 14 C 0.296 3.704 15 O -0.464 6.464 16 C -0.151 4.151 17 C -0.051 4.051 18 C -0.059 4.059 19 N -0.307 5.307 20 C -0.020 4.020 21 N -0.195 5.195 22 H 0.307 0.693 23 N -0.176 5.176 24 H 0.098 0.902 25 H 0.096 0.904 26 H 0.112 0.888 27 H 0.114 0.886 28 H 0.078 0.922 29 H 0.017 0.983 30 H 0.048 0.952 31 H 0.208 0.792 32 H 0.063 0.937 33 H 0.139 0.861 34 H 0.130 0.870 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -15.283 -25.754 5.259 30.406 hybrid contribution 0.394 0.272 -0.751 0.890 sum -14.888 -25.483 4.509 29.856 Atomic orbital electron populations 1.22138 0.76525 1.04740 1.03712 1.47903 1.08774 1.04897 1.72807 1.21339 0.97450 0.85357 0.96137 1.20961 0.94254 0.86751 0.95948 1.42415 1.67649 1.23016 1.05622 1.19627 1.29041 1.02546 0.86935 0.90925 1.25643 1.01664 0.98834 1.00541 1.69824 1.46056 1.19890 1.26084 0.85005 0.77188 0.78086 0.79037 1.19150 1.21337 1.21922 1.21234 0.87679 0.86475 0.75037 1.90722 1.16270 1.88005 1.51448 1.21495 0.98508 0.88657 1.06469 1.19527 0.95658 0.85234 1.04639 1.24122 0.97945 0.97829 0.85988 1.70433 1.20161 1.08359 1.31740 1.27097 0.93933 0.96254 0.84701 1.48096 1.44079 1.19606 1.07754 0.69293 1.77979 1.17895 0.98482 1.23248 0.90160 0.90432 0.88789 0.88631 0.92155 0.98260 0.95205 0.79222 0.93750 0.86142 0.86976 0.90228 0.89263 0.71004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.20 10.24 127.77 1.31 2.51 16 2 N -0.61 -17.07 2.87 -846.77 -2.43 -19.50 16 3 C 0.12 4.31 5.52 86.38 0.48 4.79 16 4 C 0.15 6.55 6.58 86.38 0.57 7.12 16 5 N -0.74 -40.54 5.60 -343.43 -1.92 -42.46 16 6 C -0.25 -14.76 9.99 84.03 0.84 -13.93 16 7 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 8 C -0.07 -4.44 5.50 84.86 0.47 -3.98 16 9 N -0.97 -61.04 13.06 21.65 0.28 -60.75 16 10 Si 0.98 47.60 29.55 68.60 2.03 49.63 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 13 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 14 C 0.51 15.23 7.67 87.66 0.67 15.90 16 15 O -0.58 -23.57 15.56 -3.03 -0.05 -23.62 16 16 C -0.11 -2.29 4.23 29.85 0.13 -2.16 16 17 C -0.01 -0.24 5.13 29.85 0.15 -0.09 16 18 C 0.22 4.92 7.39 138.63 1.03 5.95 16 19 N -0.58 -10.99 11.19 -191.80 -2.15 -13.14 16 20 C 0.28 2.54 13.13 180.36 2.37 4.91 16 21 N -0.48 -5.03 7.45 -60.49 -0.45 -5.48 16 22 H 0.46 1.17 8.96 -213.09 -1.91 -0.74 16 23 N -0.35 -7.21 12.80 -51.34 -0.66 -7.87 16 24 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.08 1.35 8.07 -2.38 -0.02 1.33 16 26 H 0.09 1.16 6.44 -2.39 -0.02 1.15 16 27 H 0.10 3.03 8.07 -2.39 -0.02 3.02 16 28 H 0.06 2.46 7.42 -2.39 -0.02 2.45 16 29 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 30 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.38 21.37 7.67 -92.71 -0.71 20.66 16 32 H 0.25 15.33 8.31 -92.71 -0.77 14.55 16 33 H 0.12 1.95 8.11 -2.39 -0.02 1.93 16 34 H 0.11 1.96 7.40 -2.39 -0.02 1.94 16 35 H 0.08 2.12 8.10 -2.39 -0.02 2.10 16 36 H 0.09 2.28 8.10 -2.39 -0.02 2.26 16 37 H 0.27 -0.88 8.06 -2.91 -0.02 -0.90 16 Total: -1.00 -85.18 321.77 1.14 -84.04 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -1.52 Total: 18.12 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: 8.01 Total: 21.03 kcal Atomic # 7 Polarization: -141.87 SS G_CDS: -7.33 Total: -149.20 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.05 Total: -23.62 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -85.18 1.14 -84.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493515980.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.733 kcal (2) G-P(sol) polarization free energy of solvation -85.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds