Wall clock time and date at job start Mon Mar 30 2020 00:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46833 * 2 1 4 4 H 1.08996 * 109.47065 * 305.00046 * 3 2 1 5 5 C 1.52994 * 109.47146 * 184.99488 * 3 2 1 6 6 N 1.46500 * 109.47410 * 184.99707 * 5 3 2 7 7 C 1.34774 * 120.00458 * 179.97438 * 6 5 3 8 8 O 1.21621 * 119.99646 * 0.02562 * 7 6 5 9 9 C 1.47231 * 120.00257 * 180.02562 * 7 6 5 10 10 N 1.37042 * 127.18915 * 0.13304 * 9 7 6 11 11 H 0.97005 * 126.03083 * 0.02562 * 10 9 7 12 12 N 1.28706 * 107.92674 * 180.25231 * 10 9 7 13 13 N 1.28513 * 110.64086 * 359.77097 * 12 10 9 14 14 C 1.33319 * 109.43697 * 359.97438 * 13 12 10 15 15 C 1.50706 * 126.81212 * 179.97438 * 14 13 12 16 16 N 1.46503 * 109.46709 * 64.99860 * 3 2 1 17 17 C 1.36936 * 119.99873 * 274.99872 * 16 3 2 18 18 H 1.08001 * 120.00061 * 359.97438 * 17 16 3 19 19 C 1.38812 * 119.99860 * 180.02562 * 17 16 3 20 20 N 1.31617 * 120.00075 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 120.00065 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.47009 * 89.99938 * 21 19 17 23 23 H 1.48504 * 109.46928 * 210.00226 * 21 19 17 24 24 H 1.48496 * 109.46672 * 329.99745 * 21 19 17 25 25 H 1.08993 * 109.47387 * 299.99822 * 1 2 3 26 26 H 1.09003 * 109.47159 * 60.00720 * 1 2 3 27 27 H 1.09009 * 109.46581 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47387 * 240.00178 * 2 1 3 29 29 H 1.08994 * 109.47279 * 119.99510 * 2 1 3 30 30 H 1.09008 * 109.46740 * 65.00400 * 5 3 2 31 31 H 1.09003 * 109.47814 * 305.00320 * 5 3 2 32 32 H 0.97007 * 119.99566 * 0.02562 * 6 5 3 33 33 H 1.09001 * 109.46953 * 90.02796 * 15 14 13 34 34 H 1.09000 * 109.47318 * 210.02394 * 15 14 13 35 35 H 1.09000 * 109.47161 * 330.03025 * 15 14 13 36 36 H 0.96998 * 119.99894 * 95.00340 * 16 3 2 37 37 H 0.97001 * 120.00142 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5647 1.4445 -0.1256 6 7 4.0629 2.8170 -0.0059 7 6 5.3856 3.0632 -0.0857 8 8 6.1655 2.1460 -0.2575 9 6 5.8863 4.4425 0.0352 10 7 5.1453 5.5784 0.2321 11 1 4.1802 5.6222 0.3190 12 7 5.9558 6.5773 0.2764 13 7 7.1698 6.1826 0.1285 14 6 7.1904 4.8582 -0.0227 15 6 8.4064 3.9911 -0.2245 16 7 1.6523 2.0975 1.2519 17 6 0.4154 2.6734 1.3688 18 1 -0.2741 2.6452 0.5380 19 6 0.0483 3.2944 2.5547 20 7 -1.1403 3.8484 2.6670 21 14 1.2412 3.3438 3.9914 22 1 2.0770 4.5677 3.8989 23 1 0.4801 3.3592 5.2665 24 1 2.1147 2.1436 3.9509 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0278 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 3.8498 1.0379 -1.0960 31 1 3.9954 0.8313 0.6660 32 1 3.4408 3.5485 0.1315 33 1 8.7863 3.6669 0.7443 34 1 8.1359 3.1186 -0.8191 35 1 9.1766 4.5608 -0.7446 36 1 2.2717 2.1232 1.9978 37 1 -1.3970 4.2820 3.4958 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495034654.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:17 Heat of formation + Delta-G solvation = 58.495335 kcal Electronic energy + Delta-G solvation = -20488.648855 eV Core-core repulsion = 17303.234131 eV Total energy + Delta-G solvation = -3185.414724 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.47260 -39.60168 -37.07948 -34.58010 -33.67251 -32.62309 -32.32952 -30.42453 -28.81540 -27.59243 -24.62152 -23.59449 -22.69593 -21.73992 -20.73583 -20.25403 -19.02833 -17.73926 -16.63235 -16.57660 -15.97043 -15.63555 -14.67968 -14.43562 -14.13806 -13.89069 -13.35661 -13.18939 -13.11017 -12.95875 -12.80645 -12.63226 -11.98947 -11.71248 -11.33343 -11.29624 -11.12299 -10.89963 -10.67487 -10.54375 -10.43889 -10.21693 -10.10948 -9.63877 -9.47464 -9.14897 -9.06106 -7.51555 -5.96219 -3.33673 0.77924 2.15030 2.34403 2.95934 2.99838 3.19170 3.24799 3.32258 4.15165 4.39707 4.48424 4.74232 4.93000 5.01768 5.09747 5.30019 5.54555 5.56692 5.57736 5.73318 5.74281 5.76968 5.86409 6.12046 6.12569 6.23538 6.36112 6.44274 6.48186 6.55218 6.80198 7.17927 7.34564 7.78574 7.95867 8.15165 8.21704 8.98827 9.70964 9.89611 11.21027 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017862 B = 0.006035 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.205366 B = 4638.365454 C = 5687.129315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C 0.167 3.833 4 H 0.064 0.936 5 C 0.112 3.888 6 N -0.710 5.710 7 C 0.592 3.408 8 O -0.521 6.521 9 C -0.069 4.069 10 N -0.371 5.371 11 H 0.455 0.545 12 N -0.044 5.044 13 N -0.274 5.274 14 C 0.056 3.944 15 C -0.074 4.074 16 N -0.748 5.748 17 C -0.248 4.248 18 H 0.096 0.904 19 C 0.010 3.990 20 N -0.927 5.927 21 Si 0.877 3.123 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.277 1.277 25 H 0.088 0.912 26 H 0.042 0.958 27 H 0.033 0.967 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.405 0.595 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.361 0.639 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.021 -2.311 -6.586 13.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.057 3.943 4 H 0.082 0.918 5 C -0.012 4.012 6 N -0.362 5.362 7 C 0.375 3.625 8 O -0.396 6.396 9 C -0.203 4.203 10 N -0.098 5.098 11 H 0.303 0.697 12 N -0.026 5.026 13 N -0.140 5.140 14 C -0.084 4.084 15 C -0.132 4.132 16 N -0.392 5.392 17 C -0.377 4.377 18 H 0.114 0.886 19 C -0.186 4.186 20 N -0.574 5.574 21 Si 0.707 3.293 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.203 1.203 25 H 0.106 0.894 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.241 0.759 33 H 0.099 0.901 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.194 0.806 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.562 -1.397 -6.600 14.259 hybrid contribution -0.547 -0.580 1.308 1.532 sum 12.015 -1.977 -5.292 13.277 Atomic orbital electron populations 1.21780 0.95096 0.99843 1.03779 1.22032 0.97459 0.97589 1.00253 1.20579 0.89521 0.93312 0.90878 0.91761 1.21859 0.95842 0.81403 1.02116 1.45932 1.06289 1.11597 1.72347 1.16734 0.82864 0.85227 0.77694 1.90808 1.55816 1.43371 1.49647 1.22167 0.92946 0.89464 1.15743 1.45568 1.12271 1.04730 1.47258 0.69717 1.78192 0.95226 1.12938 1.16255 1.74934 1.11084 1.10655 1.17359 1.22318 0.94242 0.91383 1.00492 1.20300 0.91682 0.97714 1.03523 1.42870 1.17025 1.67714 1.11561 1.19047 0.90949 1.27712 1.00000 0.88635 1.24664 0.96324 1.00254 0.97392 1.69677 1.19188 1.41661 1.26845 0.86695 0.81036 0.77641 0.83921 1.21293 1.21600 1.20327 0.89363 0.93848 0.94747 0.93416 0.92561 0.90709 0.91189 0.75919 0.90053 0.88745 0.90408 0.80562 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.18 37.16 0.34 -2.12 16 2 C -0.13 -1.99 5.61 -26.73 -0.15 -2.14 16 3 C 0.17 2.61 2.59 -67.93 -0.18 2.43 16 4 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 5 C 0.11 1.52 5.23 -4.04 -0.02 1.50 16 6 N -0.71 -9.47 5.38 -61.45 -0.33 -9.80 16 7 C 0.59 8.29 7.81 -12.61 -0.10 8.19 16 8 O -0.52 -8.25 14.98 5.26 0.08 -8.17 16 9 C -0.07 -0.92 7.17 -82.33 -0.59 -1.51 16 10 N -0.37 -4.57 6.97 33.31 0.23 -4.34 16 11 H 0.46 4.46 8.32 -190.33 -1.58 2.88 16 12 N -0.04 -0.64 13.35 60.35 0.81 0.17 16 13 N -0.27 -4.05 12.35 33.51 0.41 -3.64 16 14 C 0.06 0.76 7.29 -82.39 -0.60 0.16 16 15 C -0.07 -0.79 9.94 36.01 0.36 -0.43 16 16 N -0.75 -14.58 4.31 -53.42 -0.23 -14.81 16 17 C -0.25 -5.93 8.23 -15.06 -0.12 -6.05 16 18 H 0.10 2.48 7.55 -52.49 -0.40 2.09 16 19 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 20 N -0.93 -26.68 13.97 55.49 0.78 -25.90 16 21 Si 0.88 20.25 27.74 -169.99 -4.71 15.54 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.13 6.52 56.52 0.37 -5.77 16 25 H 0.09 1.79 5.99 -51.93 -0.31 1.48 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.03 0.51 8.14 -51.92 -0.42 0.08 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.41 5.21 7.40 -40.82 -0.30 4.91 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 1.05 6.60 -51.93 -0.34 0.71 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.36 7.22 5.66 -40.82 -0.23 6.99 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 311.39 15.07 4.69 4.69 Total: -1.00 -29.67 311.39 -5.57 -35.24 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -6.14 Total: 10.83 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -1.16 Total: 0.20 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: 1.67 Total: -58.32 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.08 Total: -8.17 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.71 Total: 15.54 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.67 -5.57 -35.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495034654.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.733 kcal (2) G-P(sol) polarization free energy of solvation -29.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds