Wall clock time and date at job start Mon Mar 30 2020 00:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46833 * 2 1 4 4 H 1.08996 * 109.47065 * 305.00046 * 3 2 1 5 5 C 1.52994 * 109.47146 * 184.99488 * 3 2 1 6 6 N 1.46500 * 109.47410 * 184.99707 * 5 3 2 7 7 C 1.34774 * 120.00458 * 179.97438 * 6 5 3 8 8 O 1.21621 * 119.99646 * 0.02562 * 7 6 5 9 9 C 1.47231 * 120.00257 * 180.02562 * 7 6 5 10 10 N 1.37042 * 127.18915 * 0.13304 * 9 7 6 11 11 H 0.97005 * 126.03083 * 0.02562 * 10 9 7 12 12 N 1.28706 * 107.92674 * 180.25231 * 10 9 7 13 13 N 1.28513 * 110.64086 * 359.77097 * 12 10 9 14 14 C 1.33319 * 109.43697 * 359.97438 * 13 12 10 15 15 C 1.50706 * 126.81212 * 179.97438 * 14 13 12 16 16 N 1.46503 * 109.46709 * 64.99860 * 3 2 1 17 17 C 1.36936 * 119.99873 * 274.99872 * 16 3 2 18 18 H 1.08001 * 120.00061 * 359.97438 * 17 16 3 19 19 C 1.38812 * 119.99860 * 180.02562 * 17 16 3 20 20 N 1.31617 * 120.00075 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 120.00065 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.47009 * 89.99938 * 21 19 17 23 23 H 1.48504 * 109.46928 * 210.00226 * 21 19 17 24 24 H 1.48496 * 109.46672 * 329.99745 * 21 19 17 25 25 H 1.08993 * 109.47387 * 299.99822 * 1 2 3 26 26 H 1.09003 * 109.47159 * 60.00720 * 1 2 3 27 27 H 1.09009 * 109.46581 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47387 * 240.00178 * 2 1 3 29 29 H 1.08994 * 109.47279 * 119.99510 * 2 1 3 30 30 H 1.09008 * 109.46740 * 65.00400 * 5 3 2 31 31 H 1.09003 * 109.47814 * 305.00320 * 5 3 2 32 32 H 0.97007 * 119.99566 * 0.02562 * 6 5 3 33 33 H 1.09001 * 109.46953 * 90.02796 * 15 14 13 34 34 H 1.09000 * 109.47318 * 210.02394 * 15 14 13 35 35 H 1.09000 * 109.47161 * 330.03025 * 15 14 13 36 36 H 0.96998 * 119.99894 * 95.00340 * 16 3 2 37 37 H 0.97001 * 120.00142 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5647 1.4445 -0.1256 6 7 4.0629 2.8170 -0.0059 7 6 5.3856 3.0632 -0.0857 8 8 6.1655 2.1460 -0.2575 9 6 5.8863 4.4425 0.0352 10 7 5.1453 5.5784 0.2321 11 1 4.1802 5.6222 0.3190 12 7 5.9558 6.5773 0.2764 13 7 7.1698 6.1826 0.1285 14 6 7.1904 4.8582 -0.0227 15 6 8.4064 3.9911 -0.2245 16 7 1.6523 2.0975 1.2519 17 6 0.4154 2.6734 1.3688 18 1 -0.2741 2.6452 0.5380 19 6 0.0483 3.2944 2.5547 20 7 -1.1403 3.8484 2.6670 21 14 1.2412 3.3438 3.9914 22 1 2.0770 4.5677 3.8989 23 1 0.4801 3.3592 5.2665 24 1 2.1147 2.1436 3.9509 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0278 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 3.8498 1.0379 -1.0960 31 1 3.9954 0.8313 0.6660 32 1 3.4408 3.5485 0.1315 33 1 8.7863 3.6669 0.7443 34 1 8.1359 3.1186 -0.8191 35 1 9.1766 4.5608 -0.7446 36 1 2.2717 2.1232 1.9978 37 1 -1.3970 4.2820 3.4958 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495034654.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:16 Heat of formation + Delta-G solvation = 35.719226 kcal Electronic energy + Delta-G solvation = -20489.636502 eV Core-core repulsion = 17303.234131 eV Total energy + Delta-G solvation = -3186.402370 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.51603 -40.73811 -38.45343 -35.74850 -34.86497 -34.18281 -33.45638 -32.09008 -30.03103 -28.65524 -25.87889 -25.01966 -24.08281 -22.83150 -21.90499 -21.53469 -20.21692 -19.41356 -17.74471 -17.66260 -17.11503 -17.04433 -16.11348 -15.85257 -15.45777 -14.89383 -14.75294 -14.66469 -14.45585 -14.11301 -13.98656 -13.69821 -13.11556 -13.01050 -12.92155 -12.86991 -12.40690 -12.32658 -12.11285 -11.89808 -11.70839 -11.63491 -11.43475 -11.29223 -10.94651 -10.53181 -10.14752 -9.31682 -7.97406 -5.29661 -0.26967 1.08769 1.34971 1.36677 1.39359 1.45990 1.88315 1.92086 2.48636 3.15792 3.33768 3.46521 3.58094 3.74025 3.86199 3.93795 4.31338 4.44692 4.56758 4.60223 4.72136 4.77407 4.82454 4.93380 5.04763 5.08305 5.19839 5.27073 5.34277 5.51958 5.54711 5.73206 5.86860 6.24572 6.26260 6.86563 7.09672 7.11731 7.86158 8.03952 9.23461 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017862 B = 0.006035 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.205366 B = 4638.365454 C = 5687.129315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.128 4.128 3 C 0.166 3.834 4 H 0.064 0.936 5 C 0.120 3.880 6 N -0.708 5.708 7 C 0.598 3.402 8 O -0.538 6.538 9 C -0.075 4.075 10 N -0.357 5.357 11 H 0.465 0.535 12 N -0.058 5.058 13 N -0.293 5.293 14 C 0.052 3.948 15 C -0.072 4.072 16 N -0.747 5.747 17 C -0.204 4.204 18 H 0.071 0.929 19 C -0.057 4.057 20 N -0.981 5.981 21 Si 0.935 3.065 22 H -0.280 1.280 23 H -0.309 1.309 24 H -0.259 1.259 25 H 0.045 0.955 26 H 0.042 0.958 27 H 0.052 0.948 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.408 0.592 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.363 0.637 37 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.983 -3.530 -7.354 16.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.169 4.169 3 C 0.058 3.942 4 H 0.082 0.918 5 C -0.004 4.004 6 N -0.359 5.359 7 C 0.382 3.618 8 O -0.414 6.414 9 C -0.209 4.209 10 N -0.087 5.087 11 H 0.314 0.686 12 N -0.039 5.039 13 N -0.159 5.159 14 C -0.089 4.089 15 C -0.130 4.130 16 N -0.391 5.391 17 C -0.335 4.335 18 H 0.089 0.911 19 C -0.248 4.248 20 N -0.632 5.632 21 Si 0.765 3.235 22 H -0.206 1.206 23 H -0.237 1.237 24 H -0.184 1.184 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.114 0.886 31 H 0.088 0.912 32 H 0.244 0.756 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.196 0.804 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 14.565 -2.642 -7.404 16.551 hybrid contribution -1.175 -0.281 1.412 1.858 sum 13.390 -2.923 -5.992 14.958 Atomic orbital electron populations 1.21699 0.96562 1.00388 1.01561 1.21965 0.95961 0.97013 1.01916 1.20749 0.91207 0.93462 0.88817 0.91797 1.21781 0.93716 0.81555 1.03306 1.45892 1.06194 1.11672 1.72103 1.16677 0.82733 0.85140 0.77264 1.90804 1.56195 1.43872 1.50536 1.22131 0.93101 0.89405 1.16276 1.45563 1.12684 1.04182 1.46238 0.68567 1.78155 0.95500 1.13478 1.16794 1.74928 1.11351 1.11411 1.18225 1.22801 0.95209 0.91216 0.99686 1.20386 0.91107 0.97318 1.04186 1.42859 1.15366 1.67670 1.13169 1.18958 0.91547 1.24643 0.98312 0.91134 1.25253 0.97730 1.01715 1.00124 1.69840 1.21645 1.44578 1.27185 0.85729 0.79174 0.78446 0.80195 1.20613 1.23723 1.18389 0.93627 0.93870 0.92940 0.89975 0.92613 0.88621 0.91158 0.75645 0.89109 0.89015 0.88821 0.80419 0.93754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.58 9.18 71.98 0.66 -3.92 16 2 C -0.13 -3.45 5.61 30.60 0.17 -3.27 16 3 C 0.17 4.74 2.59 44.99 0.12 4.86 16 4 H 0.06 1.88 8.08 -2.39 -0.02 1.87 16 5 C 0.12 2.85 5.23 86.38 0.45 3.31 16 6 N -0.71 -16.91 5.38 -466.57 -2.51 -19.43 16 7 C 0.60 15.25 7.81 86.61 0.68 15.93 16 8 O -0.54 -15.59 14.98 -4.10 -0.06 -15.65 16 9 C -0.07 -1.85 7.17 40.40 0.29 -1.56 16 10 N -0.36 -8.24 6.97 -48.52 -0.34 -8.57 16 11 H 0.46 8.37 8.32 -219.90 -1.83 6.54 16 12 N -0.06 -1.58 13.35 37.02 0.49 -1.09 16 13 N -0.29 -8.29 12.35 -47.88 -0.59 -8.88 16 14 C 0.05 1.31 7.29 42.04 0.31 1.61 16 15 C -0.07 -1.39 9.94 71.24 0.71 -0.68 16 16 N -0.75 -27.77 4.31 -322.93 -1.39 -29.16 16 17 C -0.20 -9.71 8.23 84.03 0.69 -9.01 16 18 H 0.07 3.72 7.55 -2.91 -0.02 3.69 16 19 C -0.06 -2.99 5.50 84.86 0.47 -2.52 16 20 N -0.98 -58.15 13.97 21.65 0.30 -57.85 16 21 Si 0.93 41.79 27.74 68.60 1.90 43.69 16 22 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 23 H -0.31 -14.80 7.11 99.48 0.71 -14.09 16 24 H -0.26 -10.60 6.52 99.48 0.65 -9.95 16 25 H 0.04 1.83 5.99 -2.39 -0.01 1.82 16 26 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.41 9.49 7.40 -92.70 -0.69 8.81 16 33 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.09 1.85 6.60 -2.39 -0.02 1.83 16 35 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.36 13.56 5.66 -92.71 -0.52 13.04 16 37 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -63.84 311.39 0.37 -63.47 By element: Atomic # 1 Polarization: 30.71 SS G_CDS: -1.98 Total: 28.73 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 4.54 Total: 4.73 kcal Atomic # 7 Polarization: -120.94 SS G_CDS: -4.04 Total: -124.97 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.06 Total: -15.65 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 1.90 Total: 43.69 kcal Total: -63.84 0.37 -63.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495034654.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.188 kcal (2) G-P(sol) polarization free energy of solvation -63.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds