Wall clock time and date at job start Mon Mar 30 2020 00:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47165 * 2 1 4 4 C 1.52997 * 109.46729 * 119.99871 * 2 1 3 5 5 N 1.46506 * 109.47289 * 294.99928 * 4 2 1 6 6 C 1.36930 * 120.00258 * 180.02562 * 5 4 2 7 7 H 1.08004 * 119.99823 * 0.02562 * 6 5 4 8 8 C 1.38815 * 120.00439 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99225 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00268 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47312 * 60.00457 * 10 8 6 12 12 H 1.48506 * 109.46866 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47236 * 300.00219 * 10 8 6 14 14 C 1.53001 * 109.47347 * 239.99678 * 2 1 3 15 15 N 1.46503 * 109.47149 * 65.00153 * 14 2 1 16 16 C 1.34769 * 119.99831 * 179.97438 * 15 14 2 17 17 O 1.21280 * 120.00233 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99882 * 180.02562 * 16 15 14 19 19 C 1.50695 * 109.47265 * 180.02562 * 18 16 15 20 20 N 1.33243 * 125.52429 * 269.69177 * 19 18 16 21 21 C 1.30832 * 109.82814 * 179.85430 * 20 19 18 22 22 N 1.34427 * 108.07815 * 0.40654 * 21 20 19 23 23 H 0.97001 * 126.82157 * 179.79462 * 22 21 20 24 24 N 1.30709 * 125.53086 * 90.00207 * 19 18 16 25 25 H 1.09004 * 109.46683 * 60.00598 * 1 2 3 26 26 H 1.09002 * 109.47620 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47757 * 300.00616 * 1 2 3 28 28 H 1.09001 * 109.47289 * 174.99800 * 4 2 1 29 29 H 1.09004 * 109.47261 * 55.00056 * 4 2 1 30 30 H 0.97001 * 119.99251 * 0.02562 * 5 4 2 31 31 H 0.97000 * 119.99950 * 179.97438 * 9 8 6 32 32 H 1.08995 * 109.47104 * 185.00632 * 14 2 1 33 33 H 1.09005 * 109.47062 * 305.00281 * 14 2 1 34 34 H 0.97002 * 119.99560 * 359.97438 * 15 14 2 35 35 H 1.09005 * 109.47433 * 300.00035 * 18 16 15 36 36 H 1.09000 * 109.47417 * 59.99690 * 18 16 15 37 37 H 1.07997 * 125.95957 * 180.12080 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6523 0.0354 2.4424 6 6 2.0017 -0.4201 3.6856 7 1 2.5634 -1.3371 3.7865 8 6 1.6349 0.2971 4.8161 9 7 0.9509 1.4147 4.6930 10 14 2.1110 -0.3248 6.5119 11 1 3.5901 -0.4153 6.6088 12 1 1.6034 0.6146 7.5441 13 1 1.5175 -1.6683 6.7311 14 6 2.0401 -0.7213 -1.2492 15 7 1.6526 0.0352 -2.4424 16 6 1.9966 -0.4132 -3.6658 17 8 2.6266 -1.4434 -3.7791 18 6 1.5985 0.3653 -4.8932 19 6 2.1008 -0.3452 -6.1236 20 7 3.2833 -0.1457 -6.7043 21 6 3.4026 -0.9261 -7.7476 22 7 2.2734 -1.6466 -7.8610 23 1 2.0714 -2.3075 -8.5416 24 7 1.4448 -1.2529 -6.7975 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 3.1262 -0.7995 1.2057 29 1 1.6052 -1.7198 1.2952 30 1 1.1481 0.8591 2.3517 31 1 0.6942 1.9158 5.4829 32 1 3.1263 -0.7996 -1.2054 33 1 1.6054 -1.7199 -1.2951 34 1 1.1483 0.8590 -2.3518 35 1 0.5122 0.4436 -4.9374 36 1 2.0331 1.3638 -4.8470 37 1 4.2572 -0.9785 -8.4059 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495782175.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:28 Heat of formation + Delta-G solvation = 51.351016 kcal Electronic energy + Delta-G solvation = -19275.794571 eV Core-core repulsion = 16090.070046 eV Total energy + Delta-G solvation = -3185.724525 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.37770 -39.65183 -36.82326 -34.34130 -33.58259 -32.49654 -31.92397 -30.18641 -29.20681 -26.37985 -25.17518 -23.14811 -22.53961 -21.26080 -20.38026 -19.67149 -18.63302 -17.44343 -16.82310 -16.16775 -15.77991 -15.43634 -15.23386 -14.57465 -14.32566 -13.81448 -13.72953 -13.41167 -13.02452 -12.80130 -12.44264 -12.37941 -12.11057 -11.96661 -11.04216 -10.88012 -10.67811 -10.54881 -10.48494 -10.38757 -10.32909 -10.14758 -10.04251 -9.76536 -9.61962 -9.00966 -8.85250 -6.90311 -5.75116 -3.03326 1.32385 2.34580 2.52629 2.61234 3.27856 3.46216 3.50300 3.51518 3.81264 4.32402 4.59851 4.61269 4.78263 5.08284 5.10740 5.20390 5.26482 5.41832 5.59776 5.84696 5.89239 5.99476 6.02404 6.08155 6.14306 6.27363 6.41865 6.50688 6.67996 6.71778 6.80173 6.89636 7.48100 7.71949 7.78410 8.19650 8.44219 9.55323 10.12816 10.47770 11.47901 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.065097 B = 0.002639 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.027140 B =10607.827936 C =10763.569228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.077 0.923 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.128 3.872 15 N -0.723 5.723 16 C 0.519 3.481 17 O -0.534 6.534 18 C -0.051 4.051 19 C 0.251 3.749 20 N -0.535 5.535 21 C 0.262 3.738 22 N -0.484 5.484 23 H 0.441 0.559 24 N -0.305 5.305 25 H 0.043 0.957 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.021 0.979 29 H 0.022 0.978 30 H 0.384 0.616 31 H 0.255 0.745 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.402 0.598 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.693 -1.611 -26.351 26.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.211 4.211 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.004 3.996 15 N -0.375 5.375 16 C 0.303 3.697 17 O -0.411 6.411 18 C -0.093 4.093 19 C -0.033 4.033 20 N -0.263 5.263 21 C -0.037 4.037 22 N -0.202 5.202 23 H 0.287 0.713 24 N -0.134 5.134 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.218 0.782 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.237 0.763 35 H 0.136 0.864 36 H 0.141 0.859 37 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 0.754 -2.434 -25.941 26.066 hybrid contribution -0.027 -0.159 0.354 0.389 sum 0.727 -2.593 -25.587 25.728 Atomic orbital electron populations 1.21795 0.94648 1.01938 1.01510 1.21554 0.96723 1.00544 0.94137 0.90429 1.20577 0.96621 0.94200 0.85396 1.42330 1.66911 1.27709 1.00575 1.19196 1.28668 1.05428 0.83691 0.91228 1.24734 1.01058 0.97417 0.97851 1.69645 1.43540 1.16600 1.28597 0.86250 0.78020 0.77688 0.84132 1.21271 1.21711 1.21287 1.21419 1.00180 0.95226 0.82773 1.45973 1.57803 1.28041 1.05694 1.20120 0.79686 0.85654 0.84216 1.90734 1.39416 1.24350 1.86573 1.19914 1.03406 0.99453 0.86557 1.23301 0.89205 0.94135 0.96628 1.70363 1.19879 1.26869 1.09143 1.26072 0.92121 0.89357 0.96130 1.48075 1.13351 1.34437 1.24369 0.71318 1.77978 1.17644 1.17394 1.00368 0.93823 0.92855 0.91161 0.96125 0.96033 0.78196 0.93490 0.91322 0.91386 0.76348 0.86384 0.85865 0.76080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.94 37.16 0.33 -1.74 16 2 C -0.11 -1.70 2.46 -90.62 -0.22 -1.92 16 3 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.16 3.21 5.65 -4.04 -0.02 3.18 16 5 N -0.73 -18.39 5.33 -59.90 -0.32 -18.71 16 6 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 7 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 8 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 9 N -0.94 -28.23 13.06 55.49 0.72 -27.51 16 10 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 C 0.13 1.78 5.06 -4.04 -0.02 1.76 16 15 N -0.72 -8.33 5.28 -60.29 -0.32 -8.65 16 16 C 0.52 6.77 7.82 -10.99 -0.09 6.68 16 17 O -0.53 -9.44 16.03 5.56 0.09 -9.35 16 18 C -0.05 -0.49 6.33 -29.04 -0.18 -0.67 16 19 C 0.25 3.05 6.63 -156.86 -1.04 2.01 16 20 N -0.53 -6.28 11.19 -11.98 -0.13 -6.41 16 21 C 0.26 1.99 13.13 -90.66 -1.19 0.80 16 22 N -0.48 -3.76 7.45 29.53 0.22 -3.54 16 23 H 0.44 1.63 8.96 -182.33 -1.63 0.00 16 24 N -0.30 -3.65 12.80 32.42 0.41 -3.24 16 25 H 0.04 0.50 7.18 -51.93 -0.37 0.13 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.38 10.01 6.85 -40.82 -0.28 9.73 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.40 3.49 7.65 -40.82 -0.31 3.18 16 35 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.12 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.22 0.47 8.06 -52.49 -0.42 0.05 16 LS Contribution 320.69 15.07 4.83 4.83 Total: -1.00 -38.10 320.69 -8.52 -46.62 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -6.32 Total: 5.71 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -2.68 Total: 2.70 kcal Atomic # 7 Polarization: -68.64 SS G_CDS: 0.59 Total: -68.05 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.35 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -38.10 -8.52 -46.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495782175.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.971 kcal (2) G-P(sol) polarization free energy of solvation -38.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds