Wall clock time and date at job start Mon Mar 30 2020 00:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47165 * 2 1 4 4 C 1.52997 * 109.46729 * 119.99871 * 2 1 3 5 5 N 1.46506 * 109.47289 * 294.99928 * 4 2 1 6 6 C 1.36930 * 120.00258 * 180.02562 * 5 4 2 7 7 H 1.08004 * 119.99823 * 0.02562 * 6 5 4 8 8 C 1.38815 * 120.00439 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99225 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00268 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47312 * 60.00457 * 10 8 6 12 12 H 1.48506 * 109.46866 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47236 * 300.00219 * 10 8 6 14 14 C 1.53001 * 109.47347 * 239.99678 * 2 1 3 15 15 N 1.46503 * 109.47149 * 65.00153 * 14 2 1 16 16 C 1.34769 * 119.99831 * 179.97438 * 15 14 2 17 17 O 1.21280 * 120.00233 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99882 * 180.02562 * 16 15 14 19 19 C 1.50695 * 109.47265 * 180.02562 * 18 16 15 20 20 N 1.33243 * 125.52429 * 269.69177 * 19 18 16 21 21 C 1.30832 * 109.82814 * 179.85430 * 20 19 18 22 22 N 1.34427 * 108.07815 * 0.40654 * 21 20 19 23 23 H 0.97001 * 126.82157 * 179.79462 * 22 21 20 24 24 N 1.30709 * 125.53086 * 90.00207 * 19 18 16 25 25 H 1.09004 * 109.46683 * 60.00598 * 1 2 3 26 26 H 1.09002 * 109.47620 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47757 * 300.00616 * 1 2 3 28 28 H 1.09001 * 109.47289 * 174.99800 * 4 2 1 29 29 H 1.09004 * 109.47261 * 55.00056 * 4 2 1 30 30 H 0.97001 * 119.99251 * 0.02562 * 5 4 2 31 31 H 0.97000 * 119.99950 * 179.97438 * 9 8 6 32 32 H 1.08995 * 109.47104 * 185.00632 * 14 2 1 33 33 H 1.09005 * 109.47062 * 305.00281 * 14 2 1 34 34 H 0.97002 * 119.99560 * 359.97438 * 15 14 2 35 35 H 1.09005 * 109.47433 * 300.00035 * 18 16 15 36 36 H 1.09000 * 109.47417 * 59.99690 * 18 16 15 37 37 H 1.07997 * 125.95957 * 180.12080 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6523 0.0354 2.4424 6 6 2.0017 -0.4201 3.6856 7 1 2.5634 -1.3371 3.7865 8 6 1.6349 0.2971 4.8161 9 7 0.9509 1.4147 4.6930 10 14 2.1110 -0.3248 6.5119 11 1 3.5901 -0.4153 6.6088 12 1 1.6034 0.6146 7.5441 13 1 1.5175 -1.6683 6.7311 14 6 2.0401 -0.7213 -1.2492 15 7 1.6526 0.0352 -2.4424 16 6 1.9966 -0.4132 -3.6658 17 8 2.6266 -1.4434 -3.7791 18 6 1.5985 0.3653 -4.8932 19 6 2.1008 -0.3452 -6.1236 20 7 3.2833 -0.1457 -6.7043 21 6 3.4026 -0.9261 -7.7476 22 7 2.2734 -1.6466 -7.8610 23 1 2.0714 -2.3075 -8.5416 24 7 1.4448 -1.2529 -6.7975 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 3.1262 -0.7995 1.2057 29 1 1.6052 -1.7198 1.2952 30 1 1.1481 0.8591 2.3517 31 1 0.6942 1.9158 5.4829 32 1 3.1263 -0.7996 -1.2054 33 1 1.6054 -1.7199 -1.2951 34 1 1.1483 0.8590 -2.3518 35 1 0.5122 0.4436 -4.9374 36 1 2.0331 1.3638 -4.8470 37 1 4.2572 -0.9785 -8.4059 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495782175.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:27 Heat of formation + Delta-G solvation = 22.151191 kcal Electronic energy + Delta-G solvation = -19277.060770 eV Core-core repulsion = 16090.070046 eV Total energy + Delta-G solvation = -3186.990724 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.06075 -40.71410 -38.23224 -35.95502 -34.38650 -34.01148 -32.69795 -31.91848 -30.11718 -27.67954 -26.85351 -24.41128 -23.71340 -22.22819 -21.51987 -20.80444 -19.32670 -19.13572 -18.09267 -17.30457 -16.73277 -16.49934 -16.17890 -16.12613 -15.50366 -15.41801 -15.12928 -14.49940 -14.37331 -14.13964 -13.69083 -13.53793 -13.14059 -13.00038 -12.92876 -12.75768 -12.20789 -12.15589 -11.97175 -11.69807 -11.63542 -11.26875 -11.07744 -10.97138 -10.92519 -10.60996 -10.09092 -8.98426 -7.94482 -5.22639 0.65711 1.48174 1.51034 1.57116 1.62503 1.71455 1.86905 2.36710 2.58220 3.18864 3.38923 3.68761 3.75208 3.88201 3.99163 4.10705 4.19446 4.37318 4.47538 4.57145 4.59148 4.73260 4.80531 4.95919 5.08357 5.14788 5.24722 5.34430 5.37006 5.43287 5.50164 5.52196 6.27442 6.28283 6.55663 7.10807 7.24422 7.35096 8.10382 8.35187 9.28777 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.065097 B = 0.002639 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.027140 B =10607.827936 C =10763.569228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 H 0.082 0.918 4 C 0.156 3.844 5 N -0.741 5.741 6 C -0.248 4.248 7 H 0.072 0.928 8 C -0.074 4.074 9 N -0.967 5.967 10 Si 0.973 3.027 11 H -0.279 1.279 12 H -0.293 1.293 13 H -0.279 1.279 14 C 0.140 3.860 15 N -0.709 5.709 16 C 0.520 3.480 17 O -0.585 6.585 18 C -0.045 4.045 19 C 0.232 3.768 20 N -0.577 5.577 21 C 0.274 3.726 22 N -0.476 5.476 23 H 0.457 0.543 24 N -0.341 5.341 25 H 0.080 0.920 26 H 0.049 0.951 27 H 0.042 0.958 28 H 0.018 0.982 29 H 0.019 0.981 30 H 0.377 0.623 31 H 0.252 0.748 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.419 0.581 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.894 -1.560 -27.788 27.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.113 4.113 3 H 0.100 0.900 4 C 0.029 3.971 5 N -0.384 5.384 6 C -0.380 4.380 7 H 0.090 0.910 8 C -0.266 4.266 9 N -0.618 5.618 10 Si 0.802 3.198 11 H -0.205 1.205 12 H -0.220 1.220 13 H -0.205 1.205 14 C 0.015 3.985 15 N -0.362 5.362 16 C 0.306 3.694 17 O -0.465 6.465 18 C -0.087 4.087 19 C -0.052 4.052 20 N -0.306 5.306 21 C -0.024 4.024 22 N -0.195 5.195 23 H 0.306 0.694 24 N -0.172 5.172 25 H 0.099 0.901 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.036 0.964 29 H 0.037 0.963 30 H 0.210 0.790 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.257 0.743 35 H 0.163 0.837 36 H 0.166 0.834 37 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 0.942 -2.396 -27.423 27.544 hybrid contribution -0.042 -0.237 0.683 0.724 sum 0.900 -2.632 -26.741 26.885 Atomic orbital electron populations 1.21736 0.93750 1.01869 1.01965 1.21332 0.97251 1.00160 0.92519 0.89968 1.20727 0.96460 0.94113 0.85804 1.42494 1.66783 1.27856 1.01292 1.19586 1.27962 1.05341 0.85127 0.90988 1.25542 1.01692 0.97897 1.01502 1.69792 1.44965 1.17810 1.29221 0.85220 0.77881 0.77165 0.79541 1.20498 1.21955 1.20520 1.21099 0.99373 0.94967 0.83056 1.45786 1.57477 1.28286 1.04657 1.20704 0.78508 0.85071 0.85152 1.90710 1.41807 1.26738 1.87290 1.20018 1.05179 0.99540 0.83988 1.23705 0.89616 0.94488 0.97369 1.70352 1.20323 1.28919 1.10971 1.27011 0.92717 0.87419 0.95285 1.48021 1.13030 1.34611 1.23876 0.69388 1.77859 1.19398 1.18074 1.01828 0.90127 0.93199 0.93871 0.96390 0.96286 0.78998 0.93919 0.92416 0.92155 0.74348 0.83678 0.83407 0.71256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 8.94 71.98 0.64 -3.15 16 2 C -0.09 -2.79 2.46 -10.79 -0.03 -2.81 16 3 H 0.08 2.41 8.14 -2.39 -0.02 2.40 16 4 C 0.16 6.24 5.65 86.38 0.49 6.73 16 5 N -0.74 -37.58 5.33 -343.44 -1.83 -39.41 16 6 C -0.25 -14.04 9.99 84.04 0.84 -13.20 16 7 H 0.07 3.95 7.83 -2.91 -0.02 3.92 16 8 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 9 N -0.97 -58.95 13.06 21.65 0.28 -58.67 16 10 Si 0.97 46.45 29.55 68.60 2.03 48.48 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 13 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 14 C 0.14 3.77 5.06 86.38 0.44 4.21 16 15 N -0.71 -15.03 5.28 -463.06 -2.45 -17.48 16 16 C 0.52 12.90 7.82 87.66 0.69 13.59 16 17 O -0.59 -20.62 16.03 -3.03 -0.05 -20.67 16 18 C -0.05 -0.79 6.33 29.10 0.18 -0.61 16 19 C 0.23 5.37 6.63 138.63 0.92 6.29 16 20 N -0.58 -12.76 11.19 -191.81 -2.15 -14.91 16 21 C 0.27 3.56 13.13 180.36 2.37 5.93 16 22 N -0.48 -6.64 7.45 -60.49 -0.45 -7.09 16 23 H 0.46 2.61 8.96 -213.10 -1.91 0.70 16 24 N -0.34 -7.85 12.80 -51.34 -0.66 -8.51 16 25 H 0.08 1.64 7.18 -2.39 -0.02 1.62 16 26 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.04 1.46 7.18 -2.39 -0.02 1.44 16 28 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.38 19.93 6.85 -92.71 -0.63 19.29 16 31 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 32 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.42 6.06 7.65 -92.71 -0.71 5.35 16 35 H 0.15 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.15 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.27 0.20 8.06 -2.91 -0.02 0.17 16 Total: -1.00 -83.60 320.69 -0.40 -84.00 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: -2.14 Total: 21.08 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: 7.01 Total: 13.16 kcal Atomic # 7 Polarization: -138.81 SS G_CDS: -7.25 Total: -146.06 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.05 Total: -20.67 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -83.60 -0.40 -84.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495782175.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.156 kcal (2) G-P(sol) polarization free energy of solvation -83.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds