Wall clock time and date at job start Mon Mar 30 2020 00:39:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09002 * 109.47070 * 2 1
4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3
5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1
6 6 N 1.46499 * 109.47194 * 180.02562 * 5 4 2
7 7 C 1.36941 * 119.99832 * 180.02562 * 6 5 4
8 8 H 1.07998 * 120.00210 * 359.97438 * 7 6 5
9 9 C 1.38814 * 119.99738 * 179.97438 * 7 6 5
10 10 N 1.31619 * 119.99638 * 179.97438 * 9 7 6
11 11 Si 1.86794 * 120.00259 * 359.97438 * 9 7 6
12 12 H 1.48500 * 109.47209 * 89.99862 * 11 9 7
13 13 H 1.48502 * 109.47232 * 210.00145 * 11 9 7
14 14 H 1.48506 * 109.47263 * 330.00248 * 11 9 7
15 15 N 1.46505 * 109.47411 * 239.99921 * 2 1 3
16 16 C 1.34769 * 119.99686 * 84.99974 * 15 2 1
17 17 O 1.21555 * 120.00387 * 359.97438 * 16 15 2
18 18 C 1.47811 * 119.99827 * 180.02562 * 16 15 2
19 19 C 1.40914 * 127.23875 * 179.97438 * 18 16 15
20 20 N 1.31129 * 105.78171 * 180.02562 * 19 18 16
21 21 N 1.28530 * 109.05321 * 359.97438 * 20 19 18
22 22 C 1.46501 * 124.43999 * 179.97438 * 21 20 19
23 23 N 1.28586 * 111.11306 * 359.72568 * 21 20 19
24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3
25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3
26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3
27 27 H 1.09001 * 109.47630 * 305.00128 * 4 2 1
28 28 H 1.09004 * 109.47346 * 65.00258 * 4 2 1
29 29 H 1.09001 * 109.46917 * 300.00567 * 5 4 2
30 30 H 1.09004 * 109.46741 * 59.99889 * 5 4 2
31 31 H 0.96997 * 120.00325 * 359.97438 * 6 5 4
32 32 H 0.97001 * 119.99760 * 179.97438 * 10 9 7
33 33 H 0.97000 * 119.99634 * 265.00306 * 15 2 1
34 34 H 1.08005 * 127.11291 * 0.02562 * 19 18 16
35 35 H 1.08998 * 109.47207 * 90.02695 * 22 21 20
36 36 H 1.09006 * 109.46843 * 210.02678 * 22 21 20
37 37 H 1.08996 * 109.47073 * 330.02248 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0399 -0.7212 1.2493
5 6 3.5648 -0.6133 1.3138
6 7 4.0531 -1.3044 2.5097
7 6 5.3951 -1.3404 2.7796
8 1 6.0936 -0.8597 2.1107
9 6 5.8578 -1.9948 3.9131
10 7 7.1477 -2.0298 4.1722
11 14 4.6497 -2.8256 5.0704
12 1 4.4444 -4.2334 4.6445
13 1 5.1914 -2.8007 6.4528
14 1 3.3526 -2.1034 5.0339
15 7 2.0184 -0.6906 -1.1962
16 6 2.1472 -0.0183 -2.3570
17 8 1.8576 1.1610 -2.4118
18 6 2.6394 -0.7152 -3.5640
19 6 2.8309 -0.1657 -4.8474
20 7 3.2763 -1.1481 -5.5931
21 7 3.3644 -2.2118 -4.8770
22 6 3.8262 -3.5099 -5.3749
23 7 2.9988 -1.9859 -3.6651
24 1 -0.3633 -1.0277 -0.0005
25 1 -0.3634 0.5139 0.8899
26 1 -0.3633 0.5138 -0.8900
27 1 1.6053 -0.2617 2.1370
28 1 1.7516 -1.7715 1.2056
29 1 3.9994 -1.0728 0.4261
30 1 3.8531 0.4370 1.3574
31 1 3.4258 -1.7358 3.1107
32 1 7.4710 -2.4868 4.9645
33 1 2.2491 -1.6318 -1.1525
34 1 2.6486 0.8538 -5.1537
35 1 4.9063 -3.5842 -5.2485
36 1 3.3391 -4.3081 -4.8148
37 1 3.5768 -3.6033 -6.4319
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001497288943.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:39:37
Heat of formation + Delta-G solvation = 83.355515 kcal
Electronic energy + Delta-G solvation = -19829.712024 eV
Core-core repulsion = 16645.375318 eV
Total energy + Delta-G solvation = -3184.336706 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 267.144 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-43.83809 -39.68468 -36.64015 -34.51493 -34.04994 -33.03198 -31.81590 -30.81273
-28.34981 -28.15348 -24.69339 -23.72304 -22.30287 -21.49581 -20.98978 -20.39637
-18.06931 -17.50188 -17.20992 -17.05970 -16.16130 -15.06509 -14.94512 -14.51801
-14.23052 -14.08692 -13.71346 -13.37988 -13.31252 -13.25805 -12.62892 -12.56491
-12.18217 -11.98290 -11.52393 -11.23594 -11.21786 -10.90825 -10.74452 -10.64503
-10.50863 -10.19059 -10.13965 -9.65657 -9.58726 -9.07355 -8.87630 -7.22694
-5.76128 -3.11798 1.15141 1.76638 1.93081 3.06253 3.21388 3.37104
3.39510 3.45015 3.73268 4.55478 4.59330 4.65737 4.74175 4.78362
4.92685 4.97022 5.15979 5.26687 5.47286 5.51404 5.63663 5.64051
5.76205 5.80076 5.93881 5.95147 6.15922 6.22726 6.27452 6.45931
6.73316 6.76782 7.44281 7.91019 8.00628 8.13321 8.42832 9.22081
9.94222 10.14116 11.42442
Molecular weight = 267.14amu
Principal moments of inertia in cm(-1)
A = 0.018733 B = 0.004279 C = 0.003750
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1494.312308 B = 6542.673282 C = 7464.639644
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.145 3.855
3 H 0.094 0.906
4 C -0.139 4.139
5 C 0.157 3.843
6 N -0.757 5.757
7 C -0.244 4.244
8 H 0.089 0.911
9 C 0.003 3.997
10 N -0.935 5.935
11 Si 0.886 3.114
12 H -0.284 1.284
13 H -0.291 1.291
14 H -0.277 1.277
15 N -0.703 5.703
16 C 0.611 3.389
17 O -0.531 6.531
18 C -0.045 4.045
19 C 0.035 3.965
20 N -0.293 5.293
21 N -0.144 5.144
22 C 0.103 3.897
23 N -0.246 5.246
24 H 0.056 0.944
25 H 0.068 0.932
26 H 0.059 0.941
27 H 0.081 0.919
28 H 0.068 0.932
29 H 0.027 0.973
30 H 0.027 0.973
31 H 0.360 0.640
32 H 0.259 0.741
33 H 0.408 0.592
34 H 0.208 0.792
35 H 0.095 0.905
36 H 0.106 0.894
37 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.091 -1.561 -18.439 22.667
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.041 3.959
3 H 0.112 0.888
4 C -0.177 4.177
5 C 0.029 3.971
6 N -0.403 5.403
7 C -0.374 4.374
8 H 0.107 0.893
9 C -0.192 4.192
10 N -0.583 5.583
11 Si 0.717 3.283
12 H -0.211 1.211
13 H -0.217 1.217
14 H -0.203 1.203
15 N -0.354 5.354
16 C 0.394 3.606
17 O -0.405 6.405
18 C -0.208 4.208
19 C -0.149 4.149
20 N -0.133 5.133
21 N -0.047 5.047
22 C -0.036 4.036
23 N -0.095 5.095
24 H 0.075 0.925
25 H 0.087 0.913
26 H 0.078 0.922
27 H 0.099 0.901
28 H 0.087 0.913
29 H 0.045 0.955
30 H 0.045 0.955
31 H 0.193 0.807
32 H 0.069 0.931
33 H 0.244 0.756
34 H 0.225 0.775
35 H 0.114 0.886
36 H 0.125 0.875
37 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges -12.613 -1.884 -18.937 22.830
hybrid contribution -0.761 -0.397 1.203 1.478
sum -13.374 -2.281 -17.734 22.328
Atomic orbital electron populations
1.22172 0.95154 1.02120 1.02537 1.21038 0.93756 0.97865 0.83265
0.88813 1.22122 0.98118 1.00901 0.96609 1.20631 0.90157 0.96050
0.90213 1.42712 1.05288 1.66283 1.25994 1.19073 0.82203 1.29283
1.06817 0.89313 1.24682 0.95615 1.00727 0.98215 1.69709 1.11747
1.48274 1.28588 0.86518 0.80948 0.79761 0.81118 1.21117 1.21725
1.20314 1.45965 1.65864 1.14601 1.09018 1.16593 0.77354 0.85513
0.81164 1.90803 1.50738 1.14598 1.84394 1.23124 1.09345 0.90763
0.97576 1.24841 1.00452 1.00201 0.89414 1.74014 1.19563 0.94225
1.25481 1.48051 1.43449 1.10203 1.02977 1.22273 1.02035 0.77520
1.01800 1.74412 1.13563 1.17817 1.03714 0.92492 0.91347 0.92158
0.90077 0.91318 0.95469 0.95489 0.80707 0.93077 0.75633 0.77506
0.88647 0.87500 0.87616
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.76 9.48 37.16 0.35 -1.41 16
2 C 0.15 1.88 2.57 -67.93 -0.17 1.70 16
3 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16
4 C -0.14 -2.00 4.87 -26.73 -0.13 -2.13 16
5 C 0.16 3.03 6.15 -4.04 -0.02 3.01 16
6 N -0.76 -18.17 5.41 -59.90 -0.32 -18.49 16
7 C -0.24 -7.04 10.47 -15.06 -0.16 -7.20 16
8 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16
9 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16
10 N -0.94 -29.70 13.97 55.49 0.78 -28.93 16
11 Si 0.89 22.13 27.73 -169.99 -4.71 17.42 16
12 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16
13 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16
14 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16
15 N -0.70 -9.19 4.53 -54.76 -0.25 -9.43 16
16 C 0.61 8.69 7.79 -12.35 -0.10 8.59 16
17 O -0.53 -8.68 16.61 5.32 0.09 -8.60 16
18 C -0.05 -0.59 7.21 -82.68 -0.60 -1.19 16
19 C 0.03 0.40 12.04 -16.84 -0.20 0.20 16
20 N -0.29 -3.37 12.01 30.89 0.37 -3.00 16
21 N -0.14 -1.53 4.35 -16.63 -0.07 -1.60 16
22 C 0.10 0.55 11.55 59.85 0.69 1.24 16
23 N -0.25 -3.07 11.84 33.42 0.40 -2.67 16
24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
25 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16
26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16
27 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16
28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16
29 H 0.03 0.54 7.75 -51.93 -0.40 0.14 16
30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16
31 H 0.36 8.31 5.53 -40.82 -0.23 8.08 16
32 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16
33 H 0.41 5.04 8.37 -40.82 -0.34 4.70 16
34 H 0.21 1.90 8.06 -52.48 -0.42 1.47 16
35 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16
36 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16
37 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16
LS Contribution 321.76 15.07 4.85 4.85
Total: -1.00 -35.75 321.76 -4.50 -40.25
By element:
Atomic # 1 Polarization: 12.57 SS G_CDS: -5.18 Total: 7.39 kcal
Atomic # 6 Polarization: 3.26 SS G_CDS: -0.43 Total: 2.82 kcal
Atomic # 7 Polarization: -65.03 SS G_CDS: 0.90 Total: -64.13 kcal
Atomic # 8 Polarization: -8.68 SS G_CDS: 0.09 Total: -8.60 kcal
Atomic # 14 Polarization: 22.13 SS G_CDS: -4.71 Total: 17.42 kcal
Total LS contribution 4.85 Total: 4.85 kcal
Total: -35.75 -4.50 -40.25 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001497288943.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 123.601 kcal
(2) G-P(sol) polarization free energy of solvation -35.750 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.852 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.496 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.246 kcal
(6) G-S(sol) free energy of system = (1) + (5) 83.356 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds