Wall clock time and date at job start Mon Mar 30 2020 00:39:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09002 * 109.47070 * 2 1
4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3
5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1
6 6 N 1.46499 * 109.47194 * 180.02562 * 5 4 2
7 7 C 1.36941 * 119.99832 * 180.02562 * 6 5 4
8 8 H 1.07998 * 120.00210 * 359.97438 * 7 6 5
9 9 C 1.38814 * 119.99738 * 179.97438 * 7 6 5
10 10 N 1.31619 * 119.99638 * 179.97438 * 9 7 6
11 11 Si 1.86794 * 120.00259 * 359.97438 * 9 7 6
12 12 H 1.48500 * 109.47209 * 89.99862 * 11 9 7
13 13 H 1.48502 * 109.47232 * 210.00145 * 11 9 7
14 14 H 1.48506 * 109.47263 * 330.00248 * 11 9 7
15 15 N 1.46505 * 109.47411 * 239.99921 * 2 1 3
16 16 C 1.34769 * 119.99686 * 84.99974 * 15 2 1
17 17 O 1.21555 * 120.00387 * 359.97438 * 16 15 2
18 18 C 1.47811 * 119.99827 * 180.02562 * 16 15 2
19 19 C 1.40914 * 127.23875 * 179.97438 * 18 16 15
20 20 N 1.31129 * 105.78171 * 180.02562 * 19 18 16
21 21 N 1.28530 * 109.05321 * 359.97438 * 20 19 18
22 22 C 1.46501 * 124.43999 * 179.97438 * 21 20 19
23 23 N 1.28586 * 111.11306 * 359.72568 * 21 20 19
24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3
25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3
26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3
27 27 H 1.09001 * 109.47630 * 305.00128 * 4 2 1
28 28 H 1.09004 * 109.47346 * 65.00258 * 4 2 1
29 29 H 1.09001 * 109.46917 * 300.00567 * 5 4 2
30 30 H 1.09004 * 109.46741 * 59.99889 * 5 4 2
31 31 H 0.96997 * 120.00325 * 359.97438 * 6 5 4
32 32 H 0.97001 * 119.99760 * 179.97438 * 10 9 7
33 33 H 0.97000 * 119.99634 * 265.00306 * 15 2 1
34 34 H 1.08005 * 127.11291 * 0.02562 * 19 18 16
35 35 H 1.08998 * 109.47207 * 90.02695 * 22 21 20
36 36 H 1.09006 * 109.46843 * 210.02678 * 22 21 20
37 37 H 1.08996 * 109.47073 * 330.02248 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0399 -0.7212 1.2493
5 6 3.5648 -0.6133 1.3138
6 7 4.0531 -1.3044 2.5097
7 6 5.3951 -1.3404 2.7796
8 1 6.0936 -0.8597 2.1107
9 6 5.8578 -1.9948 3.9131
10 7 7.1477 -2.0298 4.1722
11 14 4.6497 -2.8256 5.0704
12 1 4.4444 -4.2334 4.6445
13 1 5.1914 -2.8007 6.4528
14 1 3.3526 -2.1034 5.0339
15 7 2.0184 -0.6906 -1.1962
16 6 2.1472 -0.0183 -2.3570
17 8 1.8576 1.1610 -2.4118
18 6 2.6394 -0.7152 -3.5640
19 6 2.8309 -0.1657 -4.8474
20 7 3.2763 -1.1481 -5.5931
21 7 3.3644 -2.2118 -4.8770
22 6 3.8262 -3.5099 -5.3749
23 7 2.9988 -1.9859 -3.6651
24 1 -0.3633 -1.0277 -0.0005
25 1 -0.3634 0.5139 0.8899
26 1 -0.3633 0.5138 -0.8900
27 1 1.6053 -0.2617 2.1370
28 1 1.7516 -1.7715 1.2056
29 1 3.9994 -1.0728 0.4261
30 1 3.8531 0.4370 1.3574
31 1 3.4258 -1.7358 3.1107
32 1 7.4710 -2.4868 4.9645
33 1 2.2491 -1.6318 -1.1525
34 1 2.6486 0.8538 -5.1537
35 1 4.9063 -3.5842 -5.2485
36 1 3.3391 -4.3081 -4.8148
37 1 3.5768 -3.6033 -6.4319
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001497288943.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:39:36
Heat of formation + Delta-G solvation = 55.171733 kcal
Electronic energy + Delta-G solvation = -19830.934164 eV
Core-core repulsion = 16645.375318 eV
Total energy + Delta-G solvation = -3185.558846 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 267.144 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-44.71016 -40.78863 -37.96443 -36.22246 -34.82880 -34.05616 -33.58337 -32.16850
-29.76246 -28.89277 -25.89521 -25.22977 -23.19052 -23.10078 -22.19358 -21.45459
-19.75857 -18.84039 -18.03968 -18.00460 -17.25600 -16.60445 -16.08440 -15.81840
-15.70469 -15.40902 -15.12038 -14.77626 -14.32853 -14.00459 -13.77739 -13.65638
-13.32325 -13.10979 -12.96209 -12.88327 -12.38689 -12.22627 -12.14055 -12.00117
-11.82576 -11.74705 -11.56125 -11.32107 -10.98273 -10.52526 -10.11757 -9.31803
-8.03779 -5.38663 0.19296 0.86482 1.25440 1.38920 1.43794 1.51407
2.06094 2.16631 2.49039 2.87193 3.27494 3.44093 3.74391 3.98500
4.02066 4.12406 4.25532 4.29125 4.30960 4.48528 4.55537 4.61641
4.66339 4.76228 4.86588 4.91518 5.01445 5.18014 5.25619 5.34609
5.50332 5.51401 5.73304 6.19819 6.39131 6.98909 7.06947 7.09337
7.81412 8.03349 9.18019
Molecular weight = 267.14amu
Principal moments of inertia in cm(-1)
A = 0.018733 B = 0.004279 C = 0.003750
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1494.312308 B = 6542.673282 C = 7464.639644
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.148 3.852
3 H 0.077 0.923
4 C -0.123 4.123
5 C 0.154 3.846
6 N -0.757 5.757
7 C -0.242 4.242
8 H 0.048 0.952
9 C -0.065 4.065
10 N -0.986 5.986
11 Si 0.963 3.037
12 H -0.274 1.274
13 H -0.296 1.296
14 H -0.246 1.246
15 N -0.699 5.699
16 C 0.610 3.390
17 O -0.558 6.558
18 C -0.068 4.068
19 C 0.029 3.971
20 N -0.299 5.299
21 N -0.136 5.136
22 C 0.088 3.912
23 N -0.255 5.255
24 H 0.070 0.930
25 H 0.083 0.917
26 H 0.051 0.949
27 H 0.095 0.905
28 H 0.085 0.915
29 H 0.020 0.980
30 H 0.013 0.987
31 H 0.369 0.631
32 H 0.259 0.741
33 H 0.412 0.588
34 H 0.225 0.775
35 H 0.107 0.893
36 H 0.123 0.877
37 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.440 -2.854 -18.491 24.258
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C 0.044 3.956
3 H 0.096 0.904
4 C -0.161 4.161
5 C 0.028 3.972
6 N -0.403 5.403
7 C -0.373 4.373
8 H 0.066 0.934
9 C -0.256 4.256
10 N -0.636 5.636
11 Si 0.789 3.211
12 H -0.200 1.200
13 H -0.223 1.223
14 H -0.170 1.170
15 N -0.350 5.350
16 C 0.394 3.606
17 O -0.436 6.436
18 C -0.230 4.230
19 C -0.154 4.154
20 N -0.139 5.139
21 N -0.041 5.041
22 C -0.050 4.050
23 N -0.105 5.105
24 H 0.089 0.911
25 H 0.102 0.898
26 H 0.070 0.930
27 H 0.113 0.887
28 H 0.104 0.896
29 H 0.038 0.962
30 H 0.031 0.969
31 H 0.203 0.797
32 H 0.068 0.932
33 H 0.249 0.751
34 H 0.241 0.759
35 H 0.126 0.874
36 H 0.141 0.859
37 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges -15.004 -3.176 -19.019 24.432
hybrid contribution 0.088 -0.008 1.089 1.092
sum -14.916 -3.184 -17.930 23.539
Atomic orbital electron populations
1.22093 0.92930 1.03133 1.02927 1.21001 0.95333 0.96719 0.82552
0.90449 1.21989 0.93900 1.02380 0.97860 1.20762 0.93837 0.94474
0.88151 1.42665 1.03474 1.66690 1.27481 1.19018 0.83977 1.28266
1.06044 0.93406 1.25612 0.97715 1.01950 1.00369 1.69911 1.14431
1.49808 1.29471 0.85299 0.79294 0.78911 0.77603 1.20032 1.22286
1.17025 1.45968 1.65495 1.14730 1.08844 1.16739 0.76926 0.85234
0.81679 1.90778 1.52135 1.15715 1.84930 1.23025 1.10888 0.91350
0.97707 1.25177 1.00100 1.01114 0.88963 1.74017 1.19784 0.94535
1.25585 1.48629 1.41889 1.11228 1.02349 1.22790 1.02952 0.75810
1.03407 1.74363 1.13868 1.17561 1.04740 0.91129 0.89780 0.92967
0.88662 0.89603 0.96162 0.96883 0.79701 0.93241 0.75148 0.75883
0.87450 0.85858 0.85299
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.94 9.48 71.98 0.68 -2.26 16
2 C 0.15 3.61 2.57 44.99 0.12 3.73 16
3 H 0.08 2.17 7.58 -2.39 -0.02 2.15 16
4 C -0.12 -3.24 4.87 30.59 0.15 -3.09 16
5 C 0.15 5.86 6.15 86.38 0.53 6.39 16
6 N -0.76 -35.43 5.41 -343.44 -1.86 -37.29 16
7 C -0.24 -14.16 10.47 84.03 0.88 -13.28 16
8 H 0.05 3.12 8.06 -2.91 -0.02 3.09 16
9 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16
10 N -0.99 -63.97 13.97 21.65 0.30 -63.67 16
11 Si 0.96 44.88 27.73 68.60 1.90 46.78 16
12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16
13 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16
14 H -0.25 -10.12 6.52 99.48 0.65 -9.47 16
15 N -0.70 -17.68 4.53 -445.44 -2.02 -19.70 16
16 C 0.61 17.30 7.79 86.78 0.68 17.97 16
17 O -0.56 -18.42 16.61 -3.89 -0.06 -18.49 16
18 C -0.07 -1.78 7.21 42.24 0.30 -1.47 16
19 C 0.03 0.67 12.04 85.45 1.03 1.70 16
20 N -0.30 -6.56 12.01 -56.17 -0.67 -7.24 16
21 N -0.14 -2.71 4.35 -206.54 -0.90 -3.61 16
22 C 0.09 0.76 11.55 127.77 1.48 2.23 16
23 N -0.26 -6.14 11.84 -48.16 -0.57 -6.71 16
24 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16
25 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16
26 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16
27 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16
28 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16
29 H 0.02 0.81 7.75 -2.39 -0.02 0.79 16
30 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16
31 H 0.37 15.92 5.53 -92.71 -0.51 15.41 16
32 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16
33 H 0.41 9.71 8.37 -92.71 -0.78 8.93 16
34 H 0.22 4.02 8.06 -2.91 -0.02 3.99 16
35 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16
36 H 0.12 0.67 8.14 -2.38 -0.02 0.65 16
37 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16
Total: -1.00 -78.25 321.76 2.18 -76.06
By element:
Atomic # 1 Polarization: 25.59 SS G_CDS: -0.26 Total: 25.34 kcal
Atomic # 6 Polarization: 2.20 SS G_CDS: 6.31 Total: 8.51 kcal
Atomic # 7 Polarization: -132.50 SS G_CDS: -5.71 Total: -138.21 kcal
Atomic # 8 Polarization: -18.42 SS G_CDS: -0.06 Total: -18.49 kcal
Atomic # 14 Polarization: 44.88 SS G_CDS: 1.90 Total: 46.78 kcal
Total: -78.25 2.18 -76.06 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001497288943.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 131.236 kcal
(2) G-P(sol) polarization free energy of solvation -78.245 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.991 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.181 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.064 kcal
(6) G-S(sol) free energy of system = (1) + (5) 55.172 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds