Wall clock time and date at job start Mon Mar 30 2020 00:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47190 * 2 1 4 4 C 1.53010 * 109.47247 * 239.99846 * 2 1 3 5 5 C 1.53001 * 109.47060 * 174.99844 * 4 2 1 6 6 N 1.46499 * 109.46517 * 179.97438 * 5 4 2 7 7 C 1.36942 * 119.99414 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00205 * 0.02562 * 7 6 5 9 9 C 1.38814 * 119.99647 * 180.02562 * 7 6 5 10 10 N 1.31620 * 120.00406 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99843 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47080 * 89.99807 * 11 9 7 13 13 H 1.48499 * 109.47305 * 210.00185 * 11 9 7 14 14 H 1.48497 * 109.47097 * 330.00052 * 11 9 7 15 15 N 1.46500 * 109.47070 * 120.00059 * 2 1 3 16 16 C 1.34773 * 119.99722 * 274.99585 * 15 2 1 17 17 O 1.21281 * 120.00442 * 0.02562 * 16 15 2 18 18 C 1.50705 * 119.99762 * 179.97438 * 16 15 2 19 19 N 1.46500 * 109.47081 * 180.02562 * 18 16 15 20 20 C 1.34429 * 126.81895 * 124.99841 * 19 18 16 21 21 N 1.30837 * 108.07952 * 180.02562 * 20 19 18 22 22 C 1.33246 * 109.82318 * 359.97438 * 21 20 19 23 23 N 1.30712 * 108.94935 * 0.27015 * 22 21 20 24 24 H 1.08999 * 109.47190 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47357 * 299.99890 * 1 2 3 26 26 H 1.09001 * 109.47077 * 60.00031 * 1 2 3 27 27 H 1.09003 * 109.46800 * 295.00122 * 4 2 1 28 28 H 1.09003 * 109.46389 * 55.00197 * 4 2 1 29 29 H 1.08991 * 109.47266 * 300.00107 * 5 4 2 30 30 H 1.09001 * 109.46566 * 60.00535 * 5 4 2 31 31 H 0.96998 * 120.00494 * 0.02562 * 6 5 4 32 32 H 0.96992 * 120.00263 * 179.97438 * 10 9 7 33 33 H 0.96997 * 120.00182 * 95.00225 * 15 2 1 34 34 H 1.09002 * 109.47196 * 60.00345 * 18 16 15 35 35 H 1.08995 * 109.47509 * 300.00521 * 18 16 15 36 36 H 1.08000 * 125.96300 * 0.02949 * 20 19 18 37 37 H 1.08002 * 125.52127 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 7 4.0531 -1.3045 -2.5096 7 6 5.3952 -1.3404 -2.7795 8 1 6.0936 -0.8597 -2.1106 9 6 5.8579 -1.9949 -3.9128 10 7 5.0067 -2.5804 -4.7283 11 14 7.6887 -2.0446 -4.2807 12 1 8.2888 -3.2453 -3.6454 13 1 7.8970 -2.1054 -5.7497 14 1 8.3357 -0.8226 -3.7392 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0182 2.3571 17 8 1.8582 1.1584 2.4117 18 6 2.6488 -0.7288 3.5877 19 7 2.6977 0.2125 4.7093 20 6 2.1072 0.0683 5.9083 21 7 2.3893 1.1231 6.6292 22 6 3.1545 1.9584 5.9277 23 7 3.3662 1.4471 4.7435 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.7516 -1.7716 -1.2056 28 1 1.6053 -0.2617 -2.1370 29 1 3.8532 0.4369 -1.3574 30 1 3.9994 -1.0729 -0.4260 31 1 3.4258 -1.7360 -3.1105 32 1 5.3300 -3.0374 -5.5204 33 1 2.2490 -1.6317 1.1526 34 1 3.6479 -1.1214 3.3986 35 1 1.9760 -1.5506 3.8326 36 1 1.5051 -0.7716 6.2219 37 1 3.5341 2.9066 6.2789 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497319451.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:55 Heat of formation + Delta-G solvation = 65.899025 kcal Electronic energy + Delta-G solvation = -19676.641945 eV Core-core repulsion = 16491.548269 eV Total energy + Delta-G solvation = -3185.093676 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.22168 -39.89152 -36.69692 -34.43860 -34.20154 -32.08401 -31.34387 -30.80970 -28.13117 -27.91407 -24.11338 -22.84557 -22.14585 -21.68788 -20.90562 -20.55064 -17.68677 -17.61893 -17.02029 -16.19349 -15.89469 -15.11411 -15.02350 -14.71968 -14.33107 -13.88395 -13.78818 -13.66908 -13.38085 -13.05741 -12.90043 -12.44486 -11.99711 -11.93704 -11.27960 -11.07798 -10.84844 -10.71837 -10.62173 -10.42512 -10.18491 -10.08532 -9.92436 -9.74783 -9.66118 -9.15103 -8.90826 -6.97394 -5.81073 -3.10136 1.44711 1.97328 2.40073 2.83168 3.01361 3.40709 3.46397 3.48151 4.10447 4.17324 4.41065 4.54044 4.67111 4.70394 4.88341 5.07576 5.15477 5.26895 5.50183 5.64267 5.66638 5.85265 5.93892 6.01151 6.15430 6.19708 6.26904 6.27240 6.40314 6.53031 6.74435 6.79954 7.34777 7.66353 7.90474 8.04973 8.37982 9.49165 10.06197 10.40772 11.41797 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.023707 B = 0.003542 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.798461 B = 7904.259180 C = 8747.404036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.147 3.853 3 H 0.089 0.911 4 C -0.135 4.135 5 C 0.154 3.846 6 N -0.734 5.734 7 C -0.241 4.241 8 H 0.070 0.930 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.907 3.093 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.281 1.281 15 N -0.715 5.715 16 C 0.501 3.499 17 O -0.515 6.515 18 C 0.108 3.892 19 N -0.368 5.368 20 C 0.252 3.748 21 N -0.546 5.546 22 C 0.189 3.811 23 N -0.285 5.285 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.383 0.617 32 H 0.255 0.745 33 H 0.403 0.597 34 H 0.122 0.878 35 H 0.130 0.870 36 H 0.218 0.782 37 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.675 0.943 18.441 20.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.042 3.958 3 H 0.107 0.893 4 C -0.173 4.173 5 C 0.027 3.973 6 N -0.378 5.378 7 C -0.372 4.372 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.738 3.262 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.207 1.207 15 N -0.368 5.368 16 C 0.284 3.716 17 O -0.389 6.389 18 C -0.018 4.018 19 N -0.159 5.159 20 C -0.045 4.045 21 N -0.274 5.274 22 C -0.114 4.114 23 N -0.112 5.112 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.036 0.964 30 H 0.035 0.965 31 H 0.217 0.783 32 H 0.065 0.935 33 H 0.238 0.762 34 H 0.140 0.860 35 H 0.148 0.852 36 H 0.235 0.765 37 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -9.385 2.210 18.183 20.581 hybrid contribution 0.809 -0.967 -0.608 1.400 sum -8.576 1.242 17.576 19.596 Atomic orbital electron populations 1.22154 0.95328 1.02020 1.02365 1.21006 0.93554 0.97761 0.83439 0.89293 1.22073 0.98116 1.00780 0.96310 1.20628 0.90282 0.95680 0.90753 1.42365 1.05400 1.64926 1.25143 1.19233 0.83818 1.28565 1.05591 0.91232 1.24746 0.97766 1.00846 0.97596 1.69653 1.32830 1.40675 1.15112 0.86185 0.85036 0.77716 0.77247 1.21684 1.21706 1.20713 1.46035 1.67129 1.14259 1.09402 1.20335 0.78859 0.87833 0.84610 1.90794 1.48433 1.15189 1.84460 1.21634 1.05683 0.90133 0.84363 1.49990 1.38432 1.15638 1.11872 1.26052 0.96791 0.98986 0.82669 1.70520 1.19609 1.03518 1.33706 1.26029 0.96671 1.00590 0.88070 1.78251 1.18390 0.93854 1.20674 0.92432 0.92559 0.91396 0.91268 0.90134 0.96414 0.96458 0.78311 0.93476 0.76240 0.86043 0.85185 0.76528 0.76766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.48 37.15 0.35 -1.37 16 2 C 0.15 1.83 2.57 -67.93 -0.17 1.66 16 3 H 0.09 1.32 7.58 -51.93 -0.39 0.93 16 4 C -0.13 -1.94 4.87 -26.73 -0.13 -2.07 16 5 C 0.15 2.97 6.15 -4.04 -0.02 2.95 16 6 N -0.73 -18.24 5.60 -59.91 -0.34 -18.58 16 7 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 10 N -0.93 -27.97 13.06 55.49 0.72 -27.24 16 11 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 N -0.72 -7.54 4.53 -53.80 -0.24 -7.78 16 16 C 0.50 5.86 7.83 -10.98 -0.09 5.78 16 17 O -0.51 -8.49 15.39 5.56 0.09 -8.41 16 18 C 0.11 0.83 7.03 -5.19 -0.04 0.80 16 19 N -0.37 -3.95 3.41 -63.81 -0.22 -4.17 16 20 C 0.25 2.26 12.63 -90.65 -1.14 1.12 16 21 N -0.55 -6.35 11.19 -15.83 -0.18 -6.52 16 22 C 0.19 2.25 13.03 -91.81 -1.20 1.06 16 23 N -0.29 -3.98 11.80 29.29 0.35 -3.63 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.02 0.33 7.75 -51.93 -0.40 -0.07 16 31 H 0.38 9.92 7.67 -40.82 -0.31 9.61 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.40 3.28 8.60 -40.82 -0.35 2.93 16 34 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.13 0.37 8.09 -51.93 -0.42 -0.05 16 36 H 0.22 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.22 1.81 8.06 -52.49 -0.42 1.38 16 LS Contribution 323.88 15.07 4.88 4.88 Total: -1.00 -37.67 323.88 -7.88 -45.55 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -5.23 Total: 6.07 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -2.69 Total: 2.55 kcal Atomic # 7 Polarization: -68.02 SS G_CDS: 0.10 Total: -67.92 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.09 Total: -8.41 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -37.67 -7.88 -45.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497319451.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.451 kcal (2) G-P(sol) polarization free energy of solvation -37.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds