Wall clock time and date at job start Mon Mar 30 2020 00:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47190 * 2 1 4 4 C 1.53010 * 109.47247 * 239.99846 * 2 1 3 5 5 C 1.53001 * 109.47060 * 174.99844 * 4 2 1 6 6 N 1.46499 * 109.46517 * 179.97438 * 5 4 2 7 7 C 1.36942 * 119.99414 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00205 * 0.02562 * 7 6 5 9 9 C 1.38814 * 119.99647 * 180.02562 * 7 6 5 10 10 N 1.31620 * 120.00406 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99843 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47080 * 89.99807 * 11 9 7 13 13 H 1.48499 * 109.47305 * 210.00185 * 11 9 7 14 14 H 1.48497 * 109.47097 * 330.00052 * 11 9 7 15 15 N 1.46500 * 109.47070 * 120.00059 * 2 1 3 16 16 C 1.34773 * 119.99722 * 274.99585 * 15 2 1 17 17 O 1.21281 * 120.00442 * 0.02562 * 16 15 2 18 18 C 1.50705 * 119.99762 * 179.97438 * 16 15 2 19 19 N 1.46500 * 109.47081 * 180.02562 * 18 16 15 20 20 C 1.34429 * 126.81895 * 124.99841 * 19 18 16 21 21 N 1.30837 * 108.07952 * 180.02562 * 20 19 18 22 22 C 1.33246 * 109.82318 * 359.97438 * 21 20 19 23 23 N 1.30712 * 108.94935 * 0.27015 * 22 21 20 24 24 H 1.08999 * 109.47190 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47357 * 299.99890 * 1 2 3 26 26 H 1.09001 * 109.47077 * 60.00031 * 1 2 3 27 27 H 1.09003 * 109.46800 * 295.00122 * 4 2 1 28 28 H 1.09003 * 109.46389 * 55.00197 * 4 2 1 29 29 H 1.08991 * 109.47266 * 300.00107 * 5 4 2 30 30 H 1.09001 * 109.46566 * 60.00535 * 5 4 2 31 31 H 0.96998 * 120.00494 * 0.02562 * 6 5 4 32 32 H 0.96992 * 120.00263 * 179.97438 * 10 9 7 33 33 H 0.96997 * 120.00182 * 95.00225 * 15 2 1 34 34 H 1.09002 * 109.47196 * 60.00345 * 18 16 15 35 35 H 1.08995 * 109.47509 * 300.00521 * 18 16 15 36 36 H 1.08000 * 125.96300 * 0.02949 * 20 19 18 37 37 H 1.08002 * 125.52127 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 7 4.0531 -1.3045 -2.5096 7 6 5.3952 -1.3404 -2.7795 8 1 6.0936 -0.8597 -2.1106 9 6 5.8579 -1.9949 -3.9128 10 7 5.0067 -2.5804 -4.7283 11 14 7.6887 -2.0446 -4.2807 12 1 8.2888 -3.2453 -3.6454 13 1 7.8970 -2.1054 -5.7497 14 1 8.3357 -0.8226 -3.7392 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0182 2.3571 17 8 1.8582 1.1584 2.4117 18 6 2.6488 -0.7288 3.5877 19 7 2.6977 0.2125 4.7093 20 6 2.1072 0.0683 5.9083 21 7 2.3893 1.1231 6.6292 22 6 3.1545 1.9584 5.9277 23 7 3.3662 1.4471 4.7435 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.7516 -1.7716 -1.2056 28 1 1.6053 -0.2617 -2.1370 29 1 3.8532 0.4369 -1.3574 30 1 3.9994 -1.0729 -0.4260 31 1 3.4258 -1.7360 -3.1105 32 1 5.3300 -3.0374 -5.5204 33 1 2.2490 -1.6317 1.1526 34 1 3.6479 -1.1214 3.3986 35 1 1.9760 -1.5506 3.8326 36 1 1.5051 -0.7716 6.2219 37 1 3.5341 2.9066 6.2789 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497319451.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:54 Heat of formation + Delta-G solvation = 39.041034 kcal Electronic energy + Delta-G solvation = -19677.806595 eV Core-core repulsion = 16491.548269 eV Total energy + Delta-G solvation = -3186.258326 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.98006 -40.84809 -37.93082 -36.13279 -34.98035 -33.63019 -32.28037 -32.10343 -29.48907 -28.79433 -25.89658 -23.85923 -23.10802 -22.87191 -22.01253 -21.49406 -19.26752 -18.38762 -18.31814 -17.16150 -16.76906 -16.62622 -15.96295 -15.85375 -15.47449 -15.24699 -15.13003 -14.93219 -14.54159 -14.29945 -13.93544 -13.44443 -13.13011 -12.90408 -12.89207 -12.75803 -12.40367 -12.27874 -12.01673 -11.93883 -11.66223 -11.31744 -10.99536 -10.96357 -10.76274 -10.50637 -10.11630 -9.02584 -7.98059 -5.26983 0.71498 1.33095 1.46541 1.47752 1.54005 1.56402 2.03936 2.19541 2.53905 3.35736 3.51952 3.55139 3.64569 3.76275 4.03741 4.10130 4.15317 4.18630 4.37581 4.43530 4.55045 4.64368 4.76126 4.84281 4.98240 5.19712 5.25527 5.26298 5.32359 5.46801 5.48499 5.53844 5.90330 6.24937 6.52074 7.13604 7.21411 7.31602 8.06695 8.30590 9.25164 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.023707 B = 0.003542 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.798461 B = 7904.259180 C = 8747.404036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.155 3.845 3 H 0.059 0.941 4 C -0.117 4.117 5 C 0.154 3.846 6 N -0.745 5.745 7 C -0.250 4.250 8 H 0.070 0.930 9 C -0.071 4.071 10 N -0.967 5.967 11 Si 0.971 3.029 12 H -0.283 1.283 13 H -0.294 1.294 14 H -0.274 1.274 15 N -0.706 5.706 16 C 0.497 3.503 17 O -0.569 6.569 18 C 0.109 3.891 19 N -0.376 5.376 20 C 0.265 3.735 21 N -0.577 5.577 22 C 0.183 3.817 23 N -0.341 5.341 24 H 0.077 0.923 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.000 1.000 30 H 0.028 0.972 31 H 0.376 0.624 32 H 0.253 0.747 33 H 0.418 0.582 34 H 0.136 0.864 35 H 0.188 0.812 36 H 0.270 0.730 37 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.106 -0.682 19.691 22.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.049 3.951 3 H 0.078 0.922 4 C -0.156 4.156 5 C 0.027 3.973 6 N -0.388 5.388 7 C -0.382 4.382 8 H 0.088 0.912 9 C -0.264 4.264 10 N -0.617 5.617 11 Si 0.800 3.200 12 H -0.210 1.210 13 H -0.220 1.220 14 H -0.199 1.199 15 N -0.360 5.360 16 C 0.282 3.718 17 O -0.447 6.447 18 C -0.015 4.015 19 N -0.167 5.167 20 C -0.031 4.031 21 N -0.305 5.305 22 C -0.119 4.119 23 N -0.168 5.168 24 H 0.096 0.904 25 H 0.066 0.934 26 H 0.090 0.910 27 H 0.104 0.896 28 H 0.095 0.905 29 H 0.018 0.982 30 H 0.046 0.954 31 H 0.208 0.792 32 H 0.062 0.938 33 H 0.255 0.745 34 H 0.154 0.846 35 H 0.205 0.795 36 H 0.286 0.714 37 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -9.813 0.560 19.457 21.799 hybrid contribution 0.907 -0.454 -0.960 1.396 sum -8.906 0.107 18.497 20.530 Atomic orbital electron populations 1.22054 0.93477 1.03219 1.02128 1.20754 0.94835 0.96078 0.83411 0.92246 1.21894 0.94396 1.02027 0.97242 1.20764 0.93632 0.93889 0.88987 1.42555 1.04443 1.65240 1.26600 1.19588 0.85330 1.27762 1.05476 0.91188 1.25532 1.01934 1.01176 0.97740 1.69791 1.34572 1.41799 1.15536 0.85177 0.80187 0.77980 0.76633 1.20956 1.22039 1.19921 1.45934 1.66568 1.14842 1.08643 1.21067 0.77704 0.87311 0.85726 1.90780 1.50868 1.17682 1.85376 1.21990 1.07698 0.90083 0.81762 1.50136 1.38377 1.15146 1.13091 1.27060 0.95299 0.99212 0.81536 1.70530 1.20564 1.04624 1.34770 1.26467 0.96408 1.01314 0.87744 1.78151 1.20611 0.96078 1.21944 0.90427 0.93435 0.91036 0.89611 0.90495 0.98200 0.95424 0.79172 0.93843 0.74496 0.84591 0.79458 0.71442 0.75089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.48 71.98 0.68 -2.30 16 2 C 0.15 3.71 2.57 44.99 0.12 3.82 16 3 H 0.06 1.81 7.58 -2.39 -0.02 1.79 16 4 C -0.12 -3.24 4.87 30.60 0.15 -3.09 16 5 C 0.15 5.86 6.15 86.38 0.53 6.39 16 6 N -0.75 -36.94 5.60 -343.46 -1.92 -38.86 16 7 C -0.25 -13.89 9.99 84.03 0.84 -13.05 16 8 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 9 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 10 N -0.97 -58.05 13.06 21.65 0.28 -57.77 16 11 Si 0.97 45.68 29.55 68.60 2.03 47.71 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 14 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 15 N -0.71 -13.52 4.53 -442.53 -2.00 -15.53 16 16 C 0.50 10.91 7.83 87.66 0.69 11.60 16 17 O -0.57 -18.90 15.39 -3.03 -0.05 -18.95 16 18 C 0.11 1.35 7.03 85.63 0.60 1.95 16 19 N -0.38 -7.37 3.41 -355.80 -1.21 -8.58 16 20 C 0.26 4.03 12.63 180.36 2.28 6.31 16 21 N -0.58 -12.71 11.19 -203.99 -2.28 -14.99 16 22 C 0.18 4.37 13.03 180.76 2.36 6.72 16 23 N -0.34 -9.50 11.80 -61.24 -0.72 -10.22 16 24 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 30 H 0.03 1.01 7.75 -2.39 -0.02 0.99 16 31 H 0.38 19.49 7.67 -92.71 -0.71 18.78 16 32 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 33 H 0.42 5.53 8.60 -92.71 -0.80 4.73 16 34 H 0.14 1.32 8.14 -2.39 -0.02 1.31 16 35 H 0.19 0.05 8.09 -2.39 -0.02 0.03 16 36 H 0.27 0.68 8.06 -2.91 -0.02 0.66 16 37 H 0.23 4.02 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -84.04 323.88 2.40 -81.64 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -0.42 Total: 20.79 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 8.71 Total: 14.77 kcal Atomic # 7 Polarization: -138.09 SS G_CDS: -7.87 Total: -145.95 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.05 Total: -18.95 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -84.04 2.40 -81.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497319451.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.679 kcal (2) G-P(sol) polarization free energy of solvation -84.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds