Wall clock time and date at job start Mon Mar 30 2020 00:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47117 * 2 1 4 4 C 1.52997 * 109.47451 * 120.00172 * 2 1 3 5 5 C 1.52998 * 109.47500 * 184.99841 * 4 2 1 6 6 N 1.46493 * 109.47348 * 180.02562 * 5 4 2 7 7 C 1.36938 * 120.00320 * 180.02562 * 6 5 4 8 8 H 1.08009 * 119.99917 * 359.97438 * 7 6 5 9 9 C 1.38811 * 120.00372 * 180.02562 * 7 6 5 10 10 N 1.31618 * 119.99632 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99923 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47415 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47058 * 119.99986 * 11 9 7 14 14 H 1.48506 * 109.46991 * 239.99659 * 11 9 7 15 15 N 1.46504 * 109.46966 * 240.00624 * 2 1 3 16 16 C 1.34772 * 120.00086 * 85.00271 * 15 2 1 17 17 O 1.21283 * 120.00122 * 359.97438 * 16 15 2 18 18 C 1.50703 * 119.99767 * 180.02562 * 16 15 2 19 19 N 1.46506 * 109.46782 * 179.97438 * 18 16 15 20 20 C 1.34424 * 126.82028 * 125.00177 * 19 18 16 21 21 N 1.30835 * 108.07649 * 179.97438 * 20 19 18 22 22 C 1.33238 * 109.83029 * 0.02562 * 21 20 19 23 23 N 1.30712 * 108.94316 * 359.75029 * 22 21 20 24 24 H 1.09003 * 109.46905 * 299.99874 * 1 2 3 25 25 H 1.09000 * 109.47338 * 59.99638 * 1 2 3 26 26 H 1.08997 * 109.47206 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47274 * 305.00520 * 4 2 1 28 28 H 1.09006 * 109.46976 * 65.00009 * 4 2 1 29 29 H 1.09001 * 109.47411 * 300.00595 * 5 4 2 30 30 H 1.09006 * 109.46869 * 60.00102 * 5 4 2 31 31 H 0.97001 * 119.99882 * 359.97438 * 6 5 4 32 32 H 0.97007 * 119.99591 * 180.02562 * 10 9 7 33 33 H 0.96997 * 119.99399 * 264.99524 * 15 2 1 34 34 H 1.08999 * 109.47353 * 59.99471 * 18 16 15 35 35 H 1.09000 * 109.47019 * 299.99125 * 18 16 15 36 36 H 1.07997 * 125.96622 * 359.97438 * 20 19 18 37 37 H 1.07993 * 125.52851 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 7 4.0532 -1.3045 2.5094 7 6 5.3953 -1.3405 2.7793 8 1 6.0938 -0.8597 2.1103 9 6 5.8581 -1.9959 3.9120 10 7 5.0070 -2.5822 4.7269 11 14 7.6889 -2.0456 4.2797 12 1 8.4273 -1.3176 3.2167 13 1 7.9477 -1.4017 5.5926 14 1 8.1471 -3.4576 4.3219 15 7 2.0183 -0.6905 -1.1963 16 6 2.1470 -0.0181 -2.3571 17 8 1.8582 1.1586 -2.4116 18 6 2.6488 -0.7286 -3.5878 19 7 2.6976 0.2129 -4.7093 20 6 3.7632 0.4945 -5.4789 21 7 3.3986 1.3824 -6.3679 22 6 2.1136 1.6910 -6.1979 23 7 1.6393 0.9966 -5.1972 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6054 -0.2619 2.1369 28 1 1.7517 -1.7716 1.2055 29 1 3.9995 -1.0727 0.4258 30 1 3.8532 0.4370 1.3573 31 1 3.4259 -1.7359 3.1104 32 1 5.3304 -3.0398 5.5188 33 1 2.2490 -1.6316 -1.1527 34 1 1.9759 -1.5503 -3.8327 35 1 3.6479 -1.1211 -3.3987 36 1 4.7484 0.0631 -5.3805 37 1 1.5536 2.3967 -6.7933 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497319452.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:57 Heat of formation + Delta-G solvation = 65.358558 kcal Electronic energy + Delta-G solvation = -19676.441867 eV Core-core repulsion = 16491.324755 eV Total energy + Delta-G solvation = -3185.117112 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.22049 -39.89007 -36.70045 -34.45374 -34.19872 -32.09215 -31.34388 -30.81401 -28.13405 -27.91253 -24.12412 -22.84488 -22.14374 -21.69488 -20.90860 -20.55616 -17.70773 -17.61418 -17.02444 -16.14056 -15.90910 -15.24205 -14.94309 -14.72398 -14.27560 -13.94317 -13.80419 -13.64521 -13.38009 -13.09204 -12.89762 -12.39283 -12.04691 -11.90670 -11.28600 -11.10231 -10.87083 -10.73544 -10.63146 -10.42242 -10.19031 -10.07564 -9.92032 -9.77563 -9.65204 -9.15491 -8.93368 -6.99483 -5.83191 -3.12363 1.44164 1.97541 2.40882 2.83118 3.00821 3.38688 3.44642 3.46764 4.13614 4.20430 4.42706 4.52325 4.63848 4.69629 4.88971 5.07137 5.17306 5.27162 5.48829 5.65084 5.68056 5.85641 5.94878 6.00977 6.14788 6.20719 6.25504 6.26726 6.40263 6.53201 6.71495 6.77579 7.34862 7.64052 7.90556 8.05043 8.35728 9.46987 10.04156 10.38583 11.39690 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.023607 B = 0.003564 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.827150 B = 7855.022128 C = 8808.397011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.148 3.852 3 H 0.088 0.912 4 C -0.135 4.135 5 C 0.155 3.845 6 N -0.734 5.734 7 C -0.241 4.241 8 H 0.070 0.930 9 C -0.014 4.014 10 N -0.933 5.933 11 Si 0.907 3.093 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 N -0.715 5.715 16 C 0.501 3.499 17 O -0.515 6.515 18 C 0.109 3.891 19 N -0.368 5.368 20 C 0.256 3.744 21 N -0.546 5.546 22 C 0.190 3.810 23 N -0.291 5.291 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.017 0.983 30 H 0.017 0.983 31 H 0.384 0.616 32 H 0.255 0.745 33 H 0.403 0.597 34 H 0.119 0.881 35 H 0.133 0.867 36 H 0.220 0.780 37 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.435 1.490 -17.904 19.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.043 3.957 3 H 0.106 0.894 4 C -0.173 4.173 5 C 0.027 3.973 6 N -0.379 5.379 7 C -0.372 4.372 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.738 3.262 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 N -0.368 5.368 16 C 0.284 3.716 17 O -0.389 6.389 18 C -0.018 4.018 19 N -0.159 5.159 20 C -0.041 4.041 21 N -0.273 5.273 22 C -0.113 4.113 23 N -0.117 5.117 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.217 0.783 32 H 0.065 0.935 33 H 0.238 0.762 34 H 0.137 0.863 35 H 0.151 0.849 36 H 0.236 0.764 37 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -8.007 2.523 -17.887 19.760 hybrid contribution 1.143 -0.863 0.727 1.606 sum -6.865 1.660 -17.160 18.557 Atomic orbital electron populations 1.22159 0.95273 1.02072 1.02442 1.20998 0.93663 0.97640 0.83390 0.89371 1.22074 0.98065 1.00839 0.96344 1.20623 0.90321 0.95606 0.90747 1.42375 1.05423 1.64910 1.25142 1.19266 0.83800 1.28520 1.05637 0.91194 1.24753 0.97784 1.00813 0.97626 1.69669 1.32757 1.40605 1.15133 0.86117 0.84966 0.77240 0.77863 1.20540 1.21788 1.21808 1.46038 1.67138 1.14271 1.09387 1.20338 0.79009 0.87847 0.84445 1.90795 1.48437 1.15399 1.84267 1.21634 1.05982 0.90666 0.83500 1.49974 1.08260 1.32686 1.25016 1.26106 0.94783 0.94747 0.88478 1.70527 1.13700 1.16747 1.26371 1.26001 0.90565 0.99548 0.95160 1.78171 1.10594 1.09214 1.13749 0.91433 0.92371 0.92449 0.90124 0.91245 0.96495 0.96486 0.78295 0.93507 0.76238 0.86337 0.84908 0.76390 0.76813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.48 37.16 0.35 -1.45 16 2 C 0.15 1.84 2.57 -67.93 -0.17 1.67 16 3 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 4 C -0.13 -1.93 4.87 -26.73 -0.13 -2.06 16 5 C 0.15 2.91 6.15 -4.05 -0.02 2.89 16 6 N -0.73 -17.99 5.60 -59.91 -0.34 -18.32 16 7 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 10 N -0.93 -27.72 13.06 55.49 0.72 -26.99 16 11 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 N -0.72 -7.54 4.53 -53.81 -0.24 -7.79 16 16 C 0.50 5.87 7.83 -10.99 -0.09 5.78 16 17 O -0.51 -8.50 15.41 5.55 0.09 -8.42 16 18 C 0.11 0.83 7.03 -5.19 -0.04 0.80 16 19 N -0.37 -3.95 3.40 -63.81 -0.22 -4.17 16 20 C 0.26 2.43 12.63 -90.66 -1.14 1.28 16 21 N -0.55 -6.47 11.19 -15.84 -0.18 -6.65 16 22 C 0.19 2.21 13.03 -91.82 -1.20 1.02 16 23 N -0.29 -3.87 11.83 29.29 0.35 -3.52 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.02 0.31 7.75 -51.93 -0.40 -0.09 16 30 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.38 9.84 7.67 -40.82 -0.31 9.53 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.40 3.29 8.60 -40.82 -0.35 2.94 16 34 H 0.12 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.13 0.53 8.09 -51.93 -0.42 0.11 16 36 H 0.22 1.03 8.06 -52.49 -0.42 0.60 16 37 H 0.22 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 323.92 15.07 4.88 4.88 Total: -1.00 -37.15 323.92 -7.88 -45.02 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -5.23 Total: 6.31 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -2.69 Total: 2.67 kcal Atomic # 7 Polarization: -67.55 SS G_CDS: 0.10 Total: -67.45 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.09 Total: -8.42 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -37.15 -7.88 -45.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497319452.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.382 kcal (2) G-P(sol) polarization free energy of solvation -37.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds