Wall clock time and date at job start Mon Mar 30 2020 00:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47117 * 2 1 4 4 C 1.52997 * 109.47451 * 120.00172 * 2 1 3 5 5 C 1.52998 * 109.47500 * 184.99841 * 4 2 1 6 6 N 1.46493 * 109.47348 * 180.02562 * 5 4 2 7 7 C 1.36938 * 120.00320 * 180.02562 * 6 5 4 8 8 H 1.08009 * 119.99917 * 359.97438 * 7 6 5 9 9 C 1.38811 * 120.00372 * 180.02562 * 7 6 5 10 10 N 1.31618 * 119.99632 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99923 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47415 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47058 * 119.99986 * 11 9 7 14 14 H 1.48506 * 109.46991 * 239.99659 * 11 9 7 15 15 N 1.46504 * 109.46966 * 240.00624 * 2 1 3 16 16 C 1.34772 * 120.00086 * 85.00271 * 15 2 1 17 17 O 1.21283 * 120.00122 * 359.97438 * 16 15 2 18 18 C 1.50703 * 119.99767 * 180.02562 * 16 15 2 19 19 N 1.46506 * 109.46782 * 179.97438 * 18 16 15 20 20 C 1.34424 * 126.82028 * 125.00177 * 19 18 16 21 21 N 1.30835 * 108.07649 * 179.97438 * 20 19 18 22 22 C 1.33238 * 109.83029 * 0.02562 * 21 20 19 23 23 N 1.30712 * 108.94316 * 359.75029 * 22 21 20 24 24 H 1.09003 * 109.46905 * 299.99874 * 1 2 3 25 25 H 1.09000 * 109.47338 * 59.99638 * 1 2 3 26 26 H 1.08997 * 109.47206 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47274 * 305.00520 * 4 2 1 28 28 H 1.09006 * 109.46976 * 65.00009 * 4 2 1 29 29 H 1.09001 * 109.47411 * 300.00595 * 5 4 2 30 30 H 1.09006 * 109.46869 * 60.00102 * 5 4 2 31 31 H 0.97001 * 119.99882 * 359.97438 * 6 5 4 32 32 H 0.97007 * 119.99591 * 180.02562 * 10 9 7 33 33 H 0.96997 * 119.99399 * 264.99524 * 15 2 1 34 34 H 1.08999 * 109.47353 * 59.99471 * 18 16 15 35 35 H 1.09000 * 109.47019 * 299.99125 * 18 16 15 36 36 H 1.07997 * 125.96622 * 359.97438 * 20 19 18 37 37 H 1.07993 * 125.52851 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 7 4.0532 -1.3045 2.5094 7 6 5.3953 -1.3405 2.7793 8 1 6.0938 -0.8597 2.1103 9 6 5.8581 -1.9959 3.9120 10 7 5.0070 -2.5822 4.7269 11 14 7.6889 -2.0456 4.2797 12 1 8.4273 -1.3176 3.2167 13 1 7.9477 -1.4017 5.5926 14 1 8.1471 -3.4576 4.3219 15 7 2.0183 -0.6905 -1.1963 16 6 2.1470 -0.0181 -2.3571 17 8 1.8582 1.1586 -2.4116 18 6 2.6488 -0.7286 -3.5878 19 7 2.6976 0.2129 -4.7093 20 6 3.7632 0.4945 -5.4789 21 7 3.3986 1.3824 -6.3679 22 6 2.1136 1.6910 -6.1979 23 7 1.6393 0.9966 -5.1972 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6054 -0.2619 2.1369 28 1 1.7517 -1.7716 1.2055 29 1 3.9995 -1.0727 0.4258 30 1 3.8532 0.4370 1.3573 31 1 3.4259 -1.7359 3.1104 32 1 5.3304 -3.0398 5.5188 33 1 2.2490 -1.6316 -1.1527 34 1 1.9759 -1.5503 -3.8327 35 1 3.6479 -1.1211 -3.3987 36 1 4.7484 0.0631 -5.3805 37 1 1.5536 2.3967 -6.7933 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497319452.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:57 Heat of formation + Delta-G solvation = 39.236467 kcal Electronic energy + Delta-G solvation = -19677.574606 eV Core-core repulsion = 16491.324755 eV Total energy + Delta-G solvation = -3186.249851 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.98300 -40.84937 -37.92514 -36.12109 -34.98124 -33.61711 -32.27926 -32.09703 -29.48095 -28.80055 -25.88537 -23.85589 -23.09077 -22.88106 -22.00185 -21.50136 -19.25198 -18.38132 -18.33894 -17.11873 -16.71934 -16.66390 -16.07095 -15.76467 -15.49409 -15.20930 -15.12516 -14.86284 -14.59929 -14.31615 -13.93339 -13.43538 -13.11548 -12.91702 -12.90975 -12.75499 -12.39828 -12.22803 -11.98618 -11.94339 -11.64811 -11.32688 -11.00511 -10.95583 -10.75382 -10.49579 -10.12404 -9.00721 -7.96378 -5.25200 0.69636 1.32403 1.48049 1.49070 1.54455 1.58723 2.03584 2.18592 2.55452 3.37980 3.51339 3.55332 3.64243 3.77876 4.04603 4.10271 4.15716 4.16952 4.38244 4.43113 4.55117 4.65276 4.77272 4.83255 4.97706 5.20940 5.26010 5.26024 5.32794 5.48686 5.49286 5.53957 5.87692 6.26537 6.51875 7.13195 7.21141 7.33200 8.08790 8.31742 9.27167 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.023607 B = 0.003564 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.827150 B = 7855.022128 C = 8808.397011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.156 3.844 3 H 0.063 0.937 4 C -0.118 4.118 5 C 0.154 3.846 6 N -0.747 5.747 7 C -0.246 4.246 8 H 0.074 0.926 9 C -0.074 4.074 10 N -0.968 5.968 11 Si 0.971 3.029 12 H -0.267 1.267 13 H -0.296 1.296 14 H -0.290 1.290 15 N -0.706 5.706 16 C 0.497 3.503 17 O -0.569 6.569 18 C 0.109 3.891 19 N -0.376 5.376 20 C 0.262 3.738 21 N -0.577 5.577 22 C 0.183 3.817 23 N -0.335 5.335 24 H 0.072 0.928 25 H 0.044 0.956 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.032 0.968 30 H 0.003 0.997 31 H 0.375 0.625 32 H 0.252 0.748 33 H 0.418 0.582 34 H 0.147 0.853 35 H 0.178 0.822 36 H 0.264 0.736 37 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.574 0.371 -18.894 20.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.051 3.949 3 H 0.081 0.919 4 C -0.156 4.156 5 C 0.028 3.972 6 N -0.390 5.390 7 C -0.378 4.378 8 H 0.092 0.908 9 C -0.266 4.266 10 N -0.619 5.619 11 Si 0.801 3.199 12 H -0.191 1.191 13 H -0.223 1.223 14 H -0.217 1.217 15 N -0.360 5.360 16 C 0.282 3.718 17 O -0.447 6.447 18 C -0.015 4.015 19 N -0.167 5.167 20 C -0.034 4.034 21 N -0.305 5.305 22 C -0.119 4.119 23 N -0.162 5.162 24 H 0.091 0.909 25 H 0.063 0.937 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.050 0.950 30 H 0.021 0.979 31 H 0.207 0.793 32 H 0.061 0.939 33 H 0.255 0.745 34 H 0.165 0.835 35 H 0.195 0.805 36 H 0.280 0.720 37 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -7.146 1.382 -18.906 20.259 hybrid contribution 0.869 -0.488 1.011 1.419 sum -6.277 0.894 -17.895 18.985 Atomic orbital electron populations 1.22069 0.93945 1.03022 1.02060 1.20739 0.94549 0.96220 0.83439 0.91901 1.21889 0.94727 1.01894 0.97106 1.20772 0.93329 0.94030 0.89092 1.42587 1.04495 1.65231 1.26637 1.19643 0.85288 1.27443 1.05409 0.90846 1.25546 1.01909 1.01283 0.97868 1.69810 1.34531 1.41903 1.15621 0.85105 0.80249 0.77087 0.77501 1.19107 1.22287 1.21714 1.45935 1.66551 1.14858 1.08639 1.21062 0.77888 0.87316 0.85510 1.90781 1.50848 1.17922 1.85171 1.21985 1.09020 0.89948 0.80581 1.50134 1.07981 1.32883 1.25671 1.26994 0.95816 0.93457 0.87132 1.70532 1.13924 1.18159 1.27908 1.26492 0.90920 0.99562 0.94969 1.78083 1.12632 1.10705 1.14802 0.90923 0.93678 0.90764 0.90590 0.89827 0.94983 0.97950 0.79287 0.93942 0.74486 0.83519 0.80516 0.72016 0.74865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.48 71.98 0.68 -2.53 16 2 C 0.16 3.72 2.57 44.99 0.12 3.84 16 3 H 0.06 1.86 7.58 -2.39 -0.02 1.84 16 4 C -0.12 -3.20 4.87 30.59 0.15 -3.05 16 5 C 0.15 5.63 6.15 86.38 0.53 6.16 16 6 N -0.75 -36.12 5.60 -343.46 -1.92 -38.04 16 7 C -0.25 -13.33 9.99 84.03 0.84 -12.49 16 8 H 0.07 3.85 7.83 -2.91 -0.02 3.82 16 9 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 10 N -0.97 -57.62 13.06 21.65 0.28 -57.34 16 11 Si 0.97 44.84 29.55 68.60 2.03 46.86 16 12 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 13 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 14 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 15 N -0.71 -13.44 4.53 -442.53 -2.00 -15.44 16 16 C 0.50 10.86 7.83 87.66 0.69 11.54 16 17 O -0.57 -18.81 15.41 -3.04 -0.05 -18.86 16 18 C 0.11 1.34 7.03 85.63 0.60 1.95 16 19 N -0.38 -7.35 3.40 -355.79 -1.21 -8.56 16 20 C 0.26 4.36 12.63 180.36 2.28 6.64 16 21 N -0.58 -13.06 11.19 -204.01 -2.28 -15.34 16 22 C 0.18 4.22 13.03 180.77 2.36 6.58 16 23 N -0.34 -8.79 11.83 -61.25 -0.72 -9.52 16 24 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 29 H 0.03 1.09 7.75 -2.39 -0.02 1.07 16 30 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 31 H 0.38 19.18 7.67 -92.71 -0.71 18.47 16 32 H 0.25 14.50 8.31 -92.70 -0.77 13.73 16 33 H 0.42 5.49 8.60 -92.71 -0.80 4.69 16 34 H 0.15 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.18 0.56 8.09 -2.39 -0.02 0.54 16 36 H 0.26 1.42 8.06 -2.91 -0.02 1.40 16 37 H 0.24 3.77 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -81.77 323.92 2.40 -79.37 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: -0.42 Total: 21.89 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 8.71 Total: 14.97 kcal Atomic # 7 Polarization: -136.38 SS G_CDS: -7.86 Total: -144.24 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.05 Total: -18.86 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -81.77 2.40 -79.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497319452.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.606 kcal (2) G-P(sol) polarization free energy of solvation -81.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds