Wall clock time and date at job start Mon Mar 30 2020 00:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 120.00369 * 2 1 4 4 C 1.53004 * 109.46963 * 270.00468 * 3 2 1 5 5 C 1.53004 * 109.47001 * 179.97438 * 4 3 2 6 6 N 1.46497 * 109.47082 * 180.02562 * 5 4 3 7 7 C 1.36928 * 119.99967 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00182 * 359.97438 * 7 6 5 9 9 C 1.38816 * 120.00135 * 179.97438 * 7 6 5 10 10 N 1.31624 * 119.99901 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00042 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47381 * 59.99884 * 11 9 7 13 13 H 1.48507 * 109.47152 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47347 * 299.99748 * 11 9 7 15 15 C 1.34783 * 119.99879 * 180.02562 * 2 1 3 16 16 O 1.21614 * 120.00042 * 180.24188 * 15 2 1 17 17 C 1.47232 * 119.99876 * 0.23226 * 15 2 1 18 18 C 1.37009 * 127.19211 * 349.28956 * 17 15 2 19 19 N 1.33313 * 106.37109 * 180.29619 * 18 17 15 20 20 N 1.28512 * 109.43993 * 359.55370 * 19 18 17 21 21 N 1.28705 * 110.64076 * 0.46378 * 20 19 18 22 22 C 1.46500 * 126.03897 * 179.71924 * 21 20 19 23 23 H 1.08996 * 109.46737 * 263.21694 * 1 2 3 24 24 H 1.08996 * 109.47103 * 23.21526 * 1 2 3 25 25 H 1.09004 * 109.47453 * 143.21881 * 1 2 3 26 26 H 1.08999 * 109.46881 * 29.99798 * 3 2 1 27 27 H 1.08994 * 109.47023 * 150.00146 * 3 2 1 28 28 H 1.08999 * 109.46775 * 299.99395 * 4 3 2 29 29 H 1.08997 * 109.47442 * 59.99445 * 4 3 2 30 30 H 1.09001 * 109.46756 * 299.99894 * 5 4 3 31 31 H 1.08994 * 109.46921 * 59.99718 * 5 4 3 32 32 H 0.97006 * 119.99758 * 359.97438 * 6 5 4 33 33 H 0.97000 * 119.99547 * 179.97438 * 10 9 7 34 34 H 1.08002 * 126.80870 * 0.02562 * 18 17 15 35 35 H 1.09002 * 109.47316 * 264.82739 * 22 21 20 36 36 H 1.08997 * 109.47000 * 24.83351 * 22 21 20 37 37 H 1.09004 * 109.47340 * 144.82831 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2170 3.0357 -1.4426 6 7 3.4606 3.4589 -2.8238 7 6 4.1337 4.6248 -3.0740 8 1 4.4846 5.2326 -2.2531 9 6 4.3649 5.0256 -4.3827 10 7 3.9376 4.2847 -5.3832 11 14 5.2825 6.6165 -4.7240 12 1 6.6398 6.5432 -4.1262 13 1 5.3985 6.8161 -6.1911 14 1 4.5392 7.7548 -4.1264 15 6 2.1389 -1.1673 -0.0005 16 8 3.3550 -1.1673 0.0039 17 6 1.4027 -2.4423 -0.0063 18 6 0.0591 -2.6238 0.1914 19 7 -0.1594 -3.9361 0.1058 20 7 0.9492 -4.5394 -0.1360 21 7 1.9183 -3.6956 -0.2098 22 6 3.3242 -4.0179 -0.4661 23 1 -0.3633 -0.1214 1.0205 24 1 -0.3633 0.9444 -0.4051 25 1 -0.3634 -0.8231 -0.6153 26 1 1.6085 2.0283 0.5138 27 1 3.1499 1.1383 0.5138 28 1 3.0416 0.9507 -1.9563 29 1 1.5001 1.8407 -1.9564 30 1 2.6276 3.7951 -0.9288 31 1 4.1694 2.9057 -0.9286 32 1 3.1457 2.9128 -3.5610 33 1 4.0989 4.5650 -6.2977 34 1 -0.6762 -1.8563 0.3833 35 1 3.8557 -4.1050 0.4816 36 1 3.3877 -4.9624 -1.0065 37 1 3.7753 -3.2261 -1.0642 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498542954.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:14 Heat of formation + Delta-G solvation = 69.485605 kcal Electronic energy + Delta-G solvation = -19918.895358 eV Core-core repulsion = 16733.957208 eV Total energy + Delta-G solvation = -3184.938150 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.45304 -40.89979 -37.67463 -36.68547 -35.57316 -34.31389 -32.82040 -31.18477 -29.15183 -28.21954 -27.20041 -25.22767 -24.05207 -23.28613 -22.38305 -20.85242 -19.15838 -18.54719 -18.18589 -17.94193 -17.30521 -16.55284 -16.29579 -15.97565 -15.65613 -15.28680 -15.20351 -14.66996 -14.35606 -14.10939 -13.91558 -13.53434 -13.43856 -13.38079 -12.77120 -12.74168 -12.48139 -12.37216 -12.27715 -12.08195 -11.82265 -11.78594 -11.31797 -11.26430 -10.93020 -10.61252 -9.81979 -9.02055 -7.96250 -5.25920 -0.19532 0.99827 1.17393 1.47352 1.50967 1.57045 1.83909 1.94428 2.56174 3.12876 3.33396 3.37524 3.67969 3.86071 3.87037 4.04522 4.16084 4.17391 4.33939 4.48002 4.51626 4.56615 4.61530 4.68699 4.74001 4.84970 4.89582 4.94525 5.24507 5.27568 5.31585 5.43458 5.48549 6.13058 6.25935 6.81643 7.19867 7.31672 8.07801 8.30084 9.27367 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.035107 B = 0.003311 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.380727 B = 8454.335492 C = 8709.371937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.589 5.589 3 C 0.130 3.870 4 C -0.124 4.124 5 C 0.154 3.846 6 N -0.750 5.750 7 C -0.250 4.250 8 H 0.078 0.922 9 C -0.078 4.078 10 N -0.972 5.972 11 Si 0.977 3.023 12 H -0.278 1.278 13 H -0.295 1.295 14 H -0.274 1.274 15 C 0.586 3.414 16 O -0.567 6.567 17 C -0.080 4.080 18 C -0.002 4.002 19 N -0.301 5.301 20 N -0.079 5.079 21 N -0.256 5.256 22 C 0.074 3.926 23 H 0.099 0.901 24 H 0.099 0.901 25 H 0.091 0.909 26 H 0.119 0.881 27 H 0.076 0.924 28 H 0.038 0.962 29 H 0.069 0.931 30 H 0.036 0.964 31 H 0.016 0.984 32 H 0.372 0.628 33 H 0.252 0.748 34 H 0.251 0.749 35 H 0.110 0.890 36 H 0.126 0.874 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.677 -13.416 14.596 21.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.320 5.320 3 C 0.008 3.992 4 C -0.163 4.163 5 C 0.027 3.973 6 N -0.393 5.393 7 C -0.381 4.381 8 H 0.096 0.904 9 C -0.270 4.270 10 N -0.622 5.622 11 Si 0.805 3.195 12 H -0.205 1.205 13 H -0.222 1.222 14 H -0.200 1.200 15 C 0.372 3.628 16 O -0.446 6.446 17 C -0.215 4.215 18 C -0.162 4.162 19 N -0.163 5.163 20 N -0.059 5.059 21 N -0.053 5.053 22 C -0.066 4.066 23 H 0.117 0.883 24 H 0.118 0.882 25 H 0.109 0.891 26 H 0.137 0.863 27 H 0.095 0.905 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.034 0.966 32 H 0.203 0.797 33 H 0.060 0.940 34 H 0.266 0.734 35 H 0.128 0.872 36 H 0.145 0.855 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.321 -14.760 14.586 22.357 hybrid contribution 1.052 1.542 -0.906 2.074 sum -7.269 -13.218 13.680 20.364 Atomic orbital electron populations 1.22900 0.76683 1.06006 1.04460 1.47577 1.08930 1.04472 1.71019 1.21482 0.98255 0.83796 0.95705 1.21889 1.00327 0.96200 0.97881 1.20720 0.96595 0.94079 0.85912 1.42606 1.68243 1.25339 1.03082 1.19655 1.27381 0.98917 0.92178 0.90368 1.25632 1.03219 1.02628 0.95484 1.69823 1.53269 1.40851 0.98287 0.85165 0.78609 0.79446 0.76262 1.20450 1.22152 1.19969 1.16926 0.86022 0.82742 0.77061 1.90822 1.14265 1.87490 1.52008 1.22005 0.95475 0.88177 1.15827 1.25451 0.94139 0.95060 1.01586 1.74904 1.17042 1.06862 1.17463 1.78227 0.91207 1.18453 1.18058 1.47941 1.11386 1.03856 1.42111 1.22720 0.72551 1.05597 1.05689 0.88319 0.88201 0.89053 0.86302 0.90550 0.94298 0.91186 0.94580 0.96589 0.79682 0.93973 0.73367 0.87208 0.85539 0.88127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 8.74 127.77 1.12 1.52 16 2 N -0.59 -11.38 2.87 -850.90 -2.45 -13.82 16 3 C 0.13 2.87 5.38 86.38 0.46 3.34 16 4 C -0.12 -3.79 5.65 30.60 0.17 -3.62 16 5 C 0.15 5.96 6.26 86.38 0.54 6.50 16 6 N -0.75 -38.73 5.60 -343.46 -1.92 -40.65 16 7 C -0.25 -14.09 9.99 84.04 0.84 -13.25 16 8 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 9 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 10 N -0.97 -60.14 13.06 21.65 0.28 -59.86 16 11 Si 0.98 46.14 29.55 68.60 2.03 48.17 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 14 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 15 C 0.59 14.25 7.65 86.61 0.66 14.92 16 16 O -0.57 -17.56 14.76 -4.07 -0.06 -17.62 16 17 C -0.08 -1.75 6.81 40.41 0.28 -1.47 16 18 C 0.00 -0.04 9.93 84.18 0.84 0.79 16 19 N -0.30 -7.14 12.35 -57.50 -0.71 -7.85 16 20 N -0.08 -1.93 13.14 37.02 0.49 -1.45 16 21 N -0.26 -5.67 3.79 -356.76 -1.35 -7.02 16 22 C 0.07 1.19 10.68 127.77 1.36 2.55 16 23 H 0.10 0.43 7.62 -2.39 -0.02 0.41 16 24 H 0.10 0.81 8.02 -2.39 -0.02 0.79 16 25 H 0.09 0.83 4.98 -2.38 -0.01 0.82 16 26 H 0.12 1.86 8.07 -2.39 -0.02 1.85 16 27 H 0.08 1.92 7.42 -2.39 -0.02 1.91 16 28 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.37 20.53 7.67 -92.70 -0.71 19.82 16 33 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 34 H 0.25 2.20 4.62 -2.91 -0.01 2.18 16 35 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.10 1.88 7.03 -2.38 -0.02 1.86 16 Total: -1.00 -76.98 313.45 3.43 -73.55 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.38 Total: 19.33 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 6.74 Total: 7.24 kcal Atomic # 7 Polarization: -124.99 SS G_CDS: -5.66 Total: -130.66 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.06 Total: -17.62 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -76.98 3.43 -73.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498542954.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.034 kcal (2) G-P(sol) polarization free energy of solvation -76.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds