Wall clock time and date at job start Mon Mar 30 2020 00:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47421 * 2 1 4 4 N 1.46495 * 109.46978 * 239.99306 * 2 1 3 5 5 C 1.36938 * 119.99757 * 85.00606 * 4 2 1 6 6 H 1.08006 * 120.00292 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00095 * 179.97438 * 5 4 2 8 8 N 1.31616 * 119.99878 * 180.27276 * 7 5 4 9 9 Si 1.86799 * 119.99984 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47176 * 89.99264 * 9 7 5 11 11 H 1.48498 * 109.46962 * 209.99614 * 9 7 5 12 12 H 1.48503 * 109.46853 * 329.99519 * 9 7 5 13 13 C 1.53002 * 109.46781 * 119.99636 * 2 1 3 14 14 H 1.09004 * 109.47257 * 184.99667 * 13 2 1 15 15 C 1.53004 * 109.46983 * 64.99806 * 13 2 1 16 16 N 1.46500 * 109.47231 * 304.99993 * 13 2 1 17 17 C 1.34780 * 119.99703 * 204.99787 * 16 13 2 18 18 O 1.21620 * 120.00240 * 354.42749 * 17 16 13 19 19 C 1.47229 * 119.99779 * 174.42291 * 17 16 13 20 20 C 1.37009 * 127.18844 * 4.91856 * 19 17 16 21 21 N 1.33324 * 106.37332 * 179.90118 * 20 19 17 22 22 N 1.28517 * 109.43402 * 0.36449 * 21 20 19 23 23 N 1.28711 * 110.64070 * 359.76501 * 22 21 20 24 24 C 1.46500 * 126.03381 * 179.97438 * 23 22 21 25 25 H 1.09008 * 109.47172 * 300.00619 * 1 2 3 26 26 H 1.09006 * 109.46838 * 59.99857 * 1 2 3 27 27 H 1.08996 * 109.46978 * 180.02562 * 1 2 3 28 28 H 0.97001 * 120.00771 * 264.99714 * 4 2 1 29 29 H 0.96999 * 120.00025 * 179.72883 * 8 7 5 30 30 H 1.09003 * 109.46867 * 60.00075 * 15 13 2 31 31 H 1.09000 * 109.47026 * 179.97438 * 15 13 2 32 32 H 1.08993 * 109.47446 * 299.99847 * 15 13 2 33 33 H 0.96997 * 120.00201 * 25.00063 * 16 13 2 34 34 H 1.07997 * 126.81587 * 0.02562 * 20 19 17 35 35 H 1.09002 * 109.47479 * 264.46876 * 24 23 22 36 36 H 1.09001 * 109.47307 * 24.46814 * 24 23 22 37 37 H 1.09000 * 109.47252 * 144.46576 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1492 -0.0077 -2.3757 6 1 1.8920 1.0402 -2.4244 7 6 2.6124 -0.6620 -3.5089 8 7 2.7432 -0.0041 -4.6414 9 14 3.0565 -2.4745 -3.4250 10 1 1.8592 -3.2928 -3.7448 11 1 4.1322 -2.7664 -4.4061 12 1 3.5309 -2.8050 -2.0572 13 6 2.0400 -0.7212 1.2493 14 1 3.1263 -0.6444 1.2953 15 6 1.6351 -2.1954 1.1881 16 7 1.4558 -0.1035 2.4424 17 6 2.0912 -0.1937 3.6276 18 8 3.0956 -0.8719 3.7291 19 6 1.5694 0.5290 4.7994 20 6 0.4090 1.2534 4.8764 21 7 0.3425 1.7253 6.1216 22 7 1.3770 1.3412 6.7803 23 7 2.1456 0.6223 6.0392 24 6 3.4131 0.0123 6.4486 25 1 -0.3634 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 2.2491 -1.6319 -1.1525 29 1 3.0706 -0.4604 -5.4323 30 1 2.0697 -2.6550 0.3004 31 1 1.9987 -2.7093 2.0779 32 1 0.5488 -2.2723 1.1422 33 1 0.6117 0.3703 2.3794 34 1 -0.3102 1.4094 4.0860 35 1 4.2390 0.6637 6.1629 36 1 3.4170 -0.1265 7.5298 37 1 3.5263 -0.9544 5.9579 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505594365.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:37 Heat of formation + Delta-G solvation = 81.415254 kcal Electronic energy + Delta-G solvation = -20395.393951 eV Core-core repulsion = 17210.973110 eV Total energy + Delta-G solvation = -3184.420842 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.54307 -39.89675 -37.26398 -35.01508 -34.15010 -32.40944 -31.39584 -29.66810 -28.69729 -28.30247 -24.94275 -24.23885 -23.08439 -22.18287 -20.71227 -19.49499 -18.56105 -17.71965 -17.07793 -16.93961 -15.88696 -15.15467 -14.89279 -14.60440 -14.47627 -14.10325 -13.83739 -13.61792 -13.28653 -12.84851 -12.73326 -12.33838 -12.28046 -11.89296 -11.64469 -11.41002 -11.21961 -10.97946 -10.72777 -10.49695 -10.45799 -10.25546 -10.13237 -9.78320 -9.65160 -9.16002 -9.03662 -7.40036 -5.84969 -3.22363 0.68313 1.82475 2.04774 2.86633 2.95190 3.31621 3.33874 3.40574 4.05118 4.23437 4.46230 4.51554 4.71872 4.75763 5.04815 5.09190 5.17396 5.26869 5.32008 5.47865 5.49714 5.65013 5.77300 5.88781 6.02777 6.07251 6.13707 6.15494 6.34825 6.45519 6.59811 6.87831 7.25854 7.86308 7.90815 8.07648 8.33179 9.10475 9.82575 10.00459 11.32929 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.036579 B = 0.004123 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.276502 B = 6789.531870 C = 7148.226566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.173 3.827 3 H 0.063 0.937 4 N -0.743 5.743 5 C -0.248 4.248 6 H 0.092 0.908 7 C 0.009 3.991 8 N -0.931 5.931 9 Si 0.881 3.119 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.276 1.276 13 C 0.136 3.864 14 H 0.092 0.908 15 C -0.163 4.163 16 N -0.699 5.699 17 C 0.593 3.407 18 O -0.536 6.536 19 C -0.067 4.067 20 C 0.001 3.999 21 N -0.274 5.274 22 N -0.063 5.063 23 N -0.255 5.255 24 C 0.077 3.923 25 H 0.036 0.964 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.363 0.637 29 H 0.261 0.739 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.403 0.597 34 H 0.199 0.801 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.700 -1.215 19.852 20.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.062 3.938 3 H 0.081 0.919 4 N -0.387 5.387 5 C -0.378 4.378 6 H 0.110 0.890 7 C -0.188 4.188 8 N -0.578 5.578 9 Si 0.711 3.289 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.202 1.202 13 C 0.031 3.969 14 H 0.111 0.889 15 C -0.222 4.222 16 N -0.351 5.351 17 C 0.377 3.623 18 O -0.413 6.413 19 C -0.201 4.201 20 C -0.160 4.160 21 N -0.136 5.136 22 N -0.044 5.044 23 N -0.052 5.052 24 C -0.064 4.064 25 H 0.055 0.945 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.198 0.802 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.240 0.760 34 H 0.216 0.784 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.104 -0.919 21.112 21.236 hybrid contribution 0.170 -1.546 -1.169 1.945 sum -1.934 -2.464 19.943 20.187 Atomic orbital electron populations 1.22529 0.98621 1.01448 1.00494 1.20338 0.92535 0.95952 0.84939 0.91906 1.42780 1.79806 1.09551 1.06596 1.19039 1.37665 0.95722 0.85340 0.89037 1.24654 1.01077 0.97498 0.95532 1.69690 1.52043 1.35602 1.00443 0.86620 0.78290 0.86816 0.77198 1.20930 1.21589 1.20248 1.21472 0.99191 0.92930 0.83262 0.88944 1.22186 1.02026 0.95676 1.02275 1.45912 1.25595 1.56171 1.07434 1.16691 0.83513 0.80420 0.81707 1.90805 1.25474 1.40797 1.84240 1.22055 0.98624 1.09546 0.89891 1.23925 0.97155 0.98168 0.96742 1.74900 1.14108 1.20238 1.04386 1.78278 0.98792 1.07897 1.19443 1.47641 1.18170 1.32257 1.07122 1.22552 0.79737 1.00680 1.03384 0.94497 0.91618 0.92769 0.80192 0.92923 0.91139 0.92497 0.91920 0.75989 0.78416 0.88552 0.87890 0.86660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 9.01 37.16 0.33 -2.14 16 2 C 0.17 2.91 2.93 -67.93 -0.20 2.71 16 3 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 4 N -0.74 -16.15 4.84 -53.42 -0.26 -16.40 16 5 C -0.25 -6.61 10.41 -15.06 -0.16 -6.76 16 6 H 0.09 2.61 8.06 -52.48 -0.42 2.19 16 7 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 8 N -0.93 -28.34 13.97 55.49 0.78 -27.57 16 9 Si 0.88 21.26 27.74 -169.99 -4.71 16.55 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.28 -6.24 6.52 56.52 0.37 -5.87 16 13 C 0.14 1.96 2.58 -67.93 -0.17 1.79 16 14 H 0.09 1.52 7.66 -51.93 -0.40 1.12 16 15 C -0.16 -2.29 9.00 37.16 0.33 -1.96 16 16 N -0.70 -8.03 4.98 -54.94 -0.27 -8.31 16 17 C 0.59 7.37 7.76 -12.61 -0.10 7.27 16 18 O -0.54 -7.95 14.62 5.26 0.08 -7.88 16 19 C -0.07 -0.75 6.98 -82.34 -0.57 -1.33 16 20 C 0.00 0.01 11.55 -17.35 -0.20 -0.19 16 21 N -0.27 -3.47 12.35 30.47 0.38 -3.10 16 22 N -0.06 -0.79 13.14 60.35 0.79 0.00 16 23 N -0.26 -2.81 3.79 -64.12 -0.24 -3.06 16 24 C 0.08 0.58 10.82 59.85 0.65 1.23 16 25 H 0.04 0.39 6.29 -51.92 -0.33 0.06 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.05 0.77 6.56 -51.93 -0.34 0.43 16 28 H 0.36 7.80 3.63 -40.82 -0.15 7.65 16 29 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.07 1.09 6.29 -51.93 -0.33 0.76 16 31 H 0.06 0.78 8.07 -51.93 -0.42 0.36 16 32 H 0.06 0.80 6.56 -51.93 -0.34 0.46 16 33 H 0.40 3.63 5.61 -40.82 -0.23 3.40 16 34 H 0.20 1.29 7.56 -52.49 -0.40 0.89 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.12 0.93 6.67 -51.93 -0.35 0.58 16 LS Contribution 306.47 15.07 4.62 4.62 Total: -1.00 -32.97 306.47 -3.58 -36.55 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -4.55 Total: 7.83 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -0.18 Total: 0.77 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: 1.17 Total: -58.43 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: 0.08 Total: -7.88 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.71 Total: 16.55 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.97 -3.58 -36.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505594365.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.967 kcal (2) G-P(sol) polarization free energy of solvation -32.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds