Wall clock time and date at job start Mon Mar 30 2020 00:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47421 * 2 1 4 4 N 1.46495 * 109.46978 * 239.99306 * 2 1 3 5 5 C 1.36938 * 119.99757 * 85.00606 * 4 2 1 6 6 H 1.08006 * 120.00292 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00095 * 179.97438 * 5 4 2 8 8 N 1.31616 * 119.99878 * 180.27276 * 7 5 4 9 9 Si 1.86799 * 119.99984 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47176 * 89.99264 * 9 7 5 11 11 H 1.48498 * 109.46962 * 209.99614 * 9 7 5 12 12 H 1.48503 * 109.46853 * 329.99519 * 9 7 5 13 13 C 1.53002 * 109.46781 * 119.99636 * 2 1 3 14 14 H 1.09004 * 109.47257 * 184.99667 * 13 2 1 15 15 C 1.53004 * 109.46983 * 64.99806 * 13 2 1 16 16 N 1.46500 * 109.47231 * 304.99993 * 13 2 1 17 17 C 1.34780 * 119.99703 * 204.99787 * 16 13 2 18 18 O 1.21620 * 120.00240 * 354.42749 * 17 16 13 19 19 C 1.47229 * 119.99779 * 174.42291 * 17 16 13 20 20 C 1.37009 * 127.18844 * 4.91856 * 19 17 16 21 21 N 1.33324 * 106.37332 * 179.90118 * 20 19 17 22 22 N 1.28517 * 109.43402 * 0.36449 * 21 20 19 23 23 N 1.28711 * 110.64070 * 359.76501 * 22 21 20 24 24 C 1.46500 * 126.03381 * 179.97438 * 23 22 21 25 25 H 1.09008 * 109.47172 * 300.00619 * 1 2 3 26 26 H 1.09006 * 109.46838 * 59.99857 * 1 2 3 27 27 H 1.08996 * 109.46978 * 180.02562 * 1 2 3 28 28 H 0.97001 * 120.00771 * 264.99714 * 4 2 1 29 29 H 0.96999 * 120.00025 * 179.72883 * 8 7 5 30 30 H 1.09003 * 109.46867 * 60.00075 * 15 13 2 31 31 H 1.09000 * 109.47026 * 179.97438 * 15 13 2 32 32 H 1.08993 * 109.47446 * 299.99847 * 15 13 2 33 33 H 0.96997 * 120.00201 * 25.00063 * 16 13 2 34 34 H 1.07997 * 126.81587 * 0.02562 * 20 19 17 35 35 H 1.09002 * 109.47479 * 264.46876 * 24 23 22 36 36 H 1.09001 * 109.47307 * 24.46814 * 24 23 22 37 37 H 1.09000 * 109.47252 * 144.46576 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1492 -0.0077 -2.3757 6 1 1.8920 1.0402 -2.4244 7 6 2.6124 -0.6620 -3.5089 8 7 2.7432 -0.0041 -4.6414 9 14 3.0565 -2.4745 -3.4250 10 1 1.8592 -3.2928 -3.7448 11 1 4.1322 -2.7664 -4.4061 12 1 3.5309 -2.8050 -2.0572 13 6 2.0400 -0.7212 1.2493 14 1 3.1263 -0.6444 1.2953 15 6 1.6351 -2.1954 1.1881 16 7 1.4558 -0.1035 2.4424 17 6 2.0912 -0.1937 3.6276 18 8 3.0956 -0.8719 3.7291 19 6 1.5694 0.5290 4.7994 20 6 0.4090 1.2534 4.8764 21 7 0.3425 1.7253 6.1216 22 7 1.3770 1.3412 6.7803 23 7 2.1456 0.6223 6.0392 24 6 3.4131 0.0123 6.4486 25 1 -0.3634 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 2.2491 -1.6319 -1.1525 29 1 3.0706 -0.4604 -5.4323 30 1 2.0697 -2.6550 0.3004 31 1 1.9987 -2.7093 2.0779 32 1 0.5488 -2.2723 1.1422 33 1 0.6117 0.3703 2.3794 34 1 -0.3102 1.4094 4.0860 35 1 4.2390 0.6637 6.1629 36 1 3.4170 -0.1265 7.5298 37 1 3.5263 -0.9544 5.9579 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505594365.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:36 Heat of formation + Delta-G solvation = 55.868393 kcal Electronic energy + Delta-G solvation = -20396.501746 eV Core-core repulsion = 17210.973110 eV Total energy + Delta-G solvation = -3185.528637 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.38917 -40.96441 -38.57573 -36.01202 -35.43853 -33.92193 -32.70413 -31.04439 -29.99952 -29.01255 -26.14612 -25.64270 -24.30436 -23.27215 -21.71232 -20.79288 -20.05345 -19.10155 -17.92069 -17.82092 -16.99771 -16.66765 -16.10968 -15.86261 -15.63303 -15.41715 -15.12423 -14.63881 -14.27260 -14.03328 -13.90054 -13.68076 -13.23170 -13.20521 -13.10925 -12.86266 -12.61434 -12.26995 -12.21296 -11.87270 -11.76606 -11.62421 -11.33873 -11.23030 -10.98022 -10.67133 -10.20357 -9.33051 -8.00166 -5.33921 -0.18102 1.04054 1.18762 1.39592 1.42271 1.49174 1.92723 2.00781 2.50073 3.25185 3.31966 3.39852 3.65979 3.70611 3.81832 4.01769 4.04533 4.20786 4.28937 4.52813 4.58528 4.62004 4.66653 4.85669 4.91918 4.95848 4.98732 5.19353 5.26432 5.29134 5.36742 5.65250 5.80753 6.23200 6.31837 6.93794 7.10207 7.21727 7.85084 8.02512 9.21152 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.036579 B = 0.004123 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.276502 B = 6789.531870 C = 7148.226566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.167 3.833 3 H 0.052 0.948 4 N -0.747 5.747 5 C -0.226 4.226 6 H 0.061 0.939 7 C -0.062 4.062 8 N -0.984 5.984 9 Si 0.946 3.054 10 H -0.276 1.276 11 H -0.300 1.300 12 H -0.251 1.251 13 C 0.150 3.850 14 H 0.072 0.928 15 C -0.160 4.160 16 N -0.686 5.686 17 C 0.600 3.400 18 O -0.562 6.562 19 C -0.079 4.079 20 C 0.014 3.986 21 N -0.301 5.301 22 N -0.078 5.078 23 N -0.252 5.252 24 C 0.070 3.930 25 H 0.082 0.918 26 H 0.039 0.961 27 H 0.061 0.939 28 H 0.367 0.633 29 H 0.257 0.743 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.417 0.583 34 H 0.235 0.765 35 H 0.106 0.894 36 H 0.126 0.874 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.559 -2.232 21.873 22.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.059 3.941 3 H 0.070 0.930 4 N -0.393 5.393 5 C -0.357 4.357 6 H 0.079 0.921 7 C -0.253 4.253 8 N -0.634 5.634 9 Si 0.773 3.227 10 H -0.202 1.202 11 H -0.227 1.227 12 H -0.176 1.176 13 C 0.045 3.955 14 H 0.090 0.910 15 C -0.218 4.218 16 N -0.340 5.340 17 C 0.384 3.616 18 O -0.440 6.440 19 C -0.214 4.214 20 C -0.147 4.147 21 N -0.163 5.163 22 N -0.059 5.059 23 N -0.050 5.050 24 C -0.070 4.070 25 H 0.101 0.899 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.202 0.798 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.257 0.743 34 H 0.251 0.749 35 H 0.125 0.875 36 H 0.145 0.855 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.001 -1.923 23.222 23.494 hybrid contribution 0.427 -1.123 -1.699 2.081 sum -2.574 -3.046 21.523 21.889 Atomic orbital electron populations 1.22394 0.96080 1.02307 1.01558 1.20528 0.94178 0.95186 0.84229 0.93007 1.42786 1.80146 1.09744 1.06612 1.19011 1.35056 0.94619 0.87004 0.92073 1.25426 1.02392 1.02212 0.95281 1.69869 1.54564 1.37634 1.01359 0.85556 0.77802 0.81268 0.78057 1.20210 1.22664 1.17601 1.21043 0.98073 0.93281 0.83107 0.90961 1.22151 1.03063 0.94793 1.01774 1.45621 1.25978 1.56040 1.06330 1.16730 0.82974 0.79941 0.81949 1.90802 1.26629 1.41926 1.84661 1.21955 0.99324 1.10391 0.89734 1.24535 0.97085 0.96435 0.96673 1.74889 1.14594 1.21288 1.05500 1.78246 0.99224 1.08544 1.19892 1.47944 1.18595 1.31524 1.06925 1.22808 0.78811 1.00381 1.04966 0.89943 0.94141 0.91993 0.79782 0.93436 0.92520 0.92087 0.90197 0.74279 0.74911 0.87537 0.85522 0.87152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.28 9.01 71.98 0.65 -3.63 16 2 C 0.17 5.34 2.93 44.99 0.13 5.47 16 3 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 4 N -0.75 -31.70 4.84 -322.93 -1.56 -33.26 16 5 C -0.23 -12.14 10.41 84.03 0.87 -11.27 16 6 H 0.06 3.60 8.06 -2.91 -0.02 3.57 16 7 C -0.06 -3.51 5.50 84.86 0.47 -3.04 16 8 N -0.98 -61.60 13.97 21.65 0.30 -61.30 16 9 Si 0.95 43.85 27.74 68.60 1.90 45.75 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 12 H -0.25 -10.46 6.52 99.48 0.65 -9.81 16 13 C 0.15 4.00 2.58 44.99 0.12 4.12 16 14 H 0.07 2.27 7.66 -2.39 -0.02 2.25 16 15 C -0.16 -4.02 9.00 71.98 0.65 -3.37 16 16 N -0.69 -13.67 4.98 -445.98 -2.22 -15.89 16 17 C 0.60 13.44 7.76 86.61 0.67 14.11 16 18 O -0.56 -15.68 14.62 -4.09 -0.06 -15.74 16 19 C -0.08 -1.60 6.98 40.41 0.28 -1.31 16 20 C 0.01 0.25 11.55 84.18 0.97 1.22 16 21 N -0.30 -7.03 12.35 -57.50 -0.71 -7.74 16 22 N -0.08 -1.83 13.14 37.02 0.49 -1.34 16 23 N -0.25 -5.08 3.79 -356.77 -1.35 -6.44 16 24 C 0.07 0.93 10.82 127.77 1.38 2.31 16 25 H 0.08 1.38 6.29 -2.38 -0.01 1.37 16 26 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 27 H 0.06 1.55 6.56 -2.39 -0.02 1.53 16 28 H 0.37 15.06 3.63 -92.71 -0.34 14.72 16 29 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 30 H 0.06 1.60 6.29 -2.39 -0.02 1.58 16 31 H 0.06 1.50 8.07 -2.39 -0.02 1.48 16 32 H 0.08 1.73 6.56 -2.39 -0.02 1.71 16 33 H 0.42 5.77 5.61 -92.71 -0.52 5.25 16 34 H 0.23 2.01 7.56 -2.91 -0.02 1.99 16 35 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.11 1.62 6.67 -2.39 -0.02 1.61 16 Total: -1.00 -72.74 306.47 3.18 -69.56 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.20 Total: 21.79 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 6.19 Total: 4.61 kcal Atomic # 7 Polarization: -120.92 SS G_CDS: -5.06 Total: -125.97 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.06 Total: -15.74 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.90 Total: 45.75 kcal Total: -72.74 3.18 -69.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505594365.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.429 kcal (2) G-P(sol) polarization free energy of solvation -72.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds