Wall clock time and date at job start Mon Mar 30 2020 00:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46940 * 2 1 4 4 C 1.53001 * 109.46991 * 120.00083 * 2 1 3 5 5 N 1.46500 * 109.46833 * 175.00140 * 4 2 1 6 6 C 1.46498 * 120.00213 * 90.00291 * 5 4 2 7 7 C 1.34782 * 119.99828 * 269.99547 * 5 4 2 8 8 O 1.21548 * 120.00031 * 4.98425 * 7 5 4 9 9 C 1.47866 * 119.99780 * 184.98438 * 7 5 4 10 10 N 1.34550 * 126.05080 * 6.43452 * 9 7 5 11 11 C 1.30872 * 107.27142 * 180.02562 * 10 9 7 12 12 N 1.34590 * 107.62505 * 0.02562 * 11 10 9 13 13 C 1.46500 * 125.74904 * 180.02562 * 12 11 10 14 14 N 1.28852 * 108.49700 * 359.73090 * 12 11 10 15 15 N 1.46494 * 109.46964 * 240.00084 * 2 1 3 16 16 C 1.36937 * 120.00126 * 85.00165 * 15 2 1 17 17 H 1.07999 * 119.99853 * 359.97438 * 16 15 2 18 18 C 1.38816 * 120.00021 * 179.97438 * 16 15 2 19 19 N 1.31620 * 119.99956 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99908 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47201 * 89.99939 * 20 18 16 22 22 H 1.48503 * 109.47355 * 209.99694 * 20 18 16 23 23 H 1.48503 * 109.47396 * 329.99904 * 20 18 16 24 24 H 1.08997 * 109.46866 * 300.00047 * 1 2 3 25 25 H 1.08999 * 109.47146 * 59.99708 * 1 2 3 26 26 H 1.09005 * 109.46901 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47279 * 295.00081 * 4 2 1 28 28 H 1.08999 * 109.47479 * 55.00035 * 4 2 1 29 29 H 1.08997 * 109.47497 * 95.28514 * 6 5 4 30 30 H 1.09002 * 109.47316 * 215.28850 * 6 5 4 31 31 H 1.08998 * 109.46808 * 335.28506 * 6 5 4 32 32 H 1.07998 * 126.18832 * 180.02562 * 11 10 9 33 33 H 1.08997 * 109.46671 * 89.99985 * 13 12 11 34 34 H 1.09000 * 109.46853 * 209.99912 * 13 12 11 35 35 H 1.09003 * 109.46794 * 329.99910 * 13 12 11 36 36 H 0.97001 * 120.00075 * 264.99601 * 15 2 1 37 37 H 0.97000 * 119.99695 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5001 -0.8264 1.1906 6 6 4.3343 0.2340 1.7613 7 6 4.0758 -1.8987 0.6116 8 8 3.3871 -2.7337 0.0584 9 6 5.5452 -2.0594 0.6493 10 7 6.4096 -1.2818 1.3264 11 6 7.6110 -1.7506 1.1031 12 7 7.4881 -2.8154 0.2892 13 6 8.5896 -3.6409 -0.2124 14 7 6.2380 -2.9901 0.0304 15 7 2.0183 -0.6906 -1.1961 16 6 2.1491 -0.0074 -2.3757 17 1 1.8919 1.0403 -2.4243 18 6 2.6123 -0.6617 -3.5090 19 7 2.9262 -1.9385 -3.4497 20 14 2.7900 0.2700 -5.1182 21 1 4.1519 0.8561 -5.2031 22 1 2.5804 -0.6617 -6.2555 23 1 1.7792 1.3564 -5.1755 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.7516 -0.1584 2.1370 28 1 1.6054 -1.7198 1.2952 29 1 4.6203 -0.0361 2.7778 30 1 5.2301 0.3588 1.1528 31 1 3.7733 1.1684 1.7778 32 1 8.5339 -1.3546 1.5002 33 1 8.7742 -4.4609 0.4816 34 1 8.3252 -4.0445 -1.1898 35 1 9.4888 -3.0313 -0.3021 36 1 2.2491 -1.6317 -1.1526 37 1 3.2503 -2.3956 -4.2415 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507077090.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:48 Heat of formation + Delta-G solvation = 94.055247 kcal Electronic energy + Delta-G solvation = -21120.033345 eV Core-core repulsion = 17936.160615 eV Total energy + Delta-G solvation = -3183.872730 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.19449 -39.09848 -35.79411 -34.68426 -33.91086 -31.77205 -31.50652 -28.63710 -27.92526 -26.67150 -25.54738 -23.53325 -22.96690 -21.94256 -19.98400 -19.06912 -17.46031 -16.93774 -16.57391 -15.96635 -15.83202 -14.94841 -14.66344 -14.37012 -13.64709 -13.38683 -13.35269 -13.09081 -12.72637 -12.37812 -12.24366 -12.02741 -11.82025 -11.49260 -11.25348 -11.07354 -10.72621 -10.54245 -10.26622 -10.22602 -10.02291 -9.87651 -9.51389 -9.34480 -9.23047 -8.71088 -7.91726 -6.67176 -5.47942 -2.77653 1.75083 2.36215 2.40418 3.42617 3.53409 3.57914 3.60341 4.00476 4.29996 4.42980 4.76297 4.85133 4.88506 5.11999 5.23720 5.57892 5.69310 5.75574 5.80892 6.09198 6.11145 6.15140 6.23571 6.33968 6.40937 6.51437 6.54097 6.68499 6.83308 6.94982 7.10744 7.29450 7.87755 7.90644 8.26618 8.67057 8.86298 9.80136 10.45320 10.84455 11.71834 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.015418 B = 0.007579 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.564585 B = 3693.580300 C = 4905.864427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.153 3.847 3 H 0.044 0.956 4 C 0.113 3.887 5 N -0.592 5.592 6 C 0.092 3.908 7 C 0.615 3.385 8 O -0.489 6.489 9 C 0.161 3.839 10 N -0.484 5.484 11 C 0.175 3.825 12 N -0.310 5.310 13 C 0.088 3.912 14 N -0.245 5.245 15 N -0.722 5.722 16 C -0.237 4.237 17 H 0.064 0.936 18 C -0.014 4.014 19 N -0.916 5.916 20 Si 0.897 3.103 21 H -0.294 1.294 22 H -0.293 1.293 23 H -0.284 1.284 24 H 0.035 0.965 25 H 0.054 0.946 26 H 0.047 0.953 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.050 0.950 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.221 0.779 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.400 0.600 37 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.660 0.760 13.374 17.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.041 3.959 3 H 0.062 0.938 4 C -0.010 4.010 5 N -0.326 5.326 6 C -0.051 4.051 7 C 0.398 3.602 8 O -0.359 6.359 9 C -0.119 4.119 10 N -0.210 5.210 11 C -0.120 4.120 12 N -0.105 5.105 13 C -0.053 4.053 14 N -0.084 5.084 15 N -0.368 5.368 16 C -0.369 4.369 17 H 0.082 0.918 18 C -0.211 4.211 19 N -0.564 5.564 20 Si 0.729 3.271 21 H -0.222 1.222 22 H -0.220 1.220 23 H -0.209 1.209 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.237 0.763 33 H 0.105 0.895 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.239 0.761 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 10.906 0.145 12.723 16.758 hybrid contribution 0.750 0.409 -1.044 1.349 sum 11.656 0.554 11.679 16.510 Atomic orbital electron populations 1.22413 0.99129 1.00966 0.99879 1.20664 0.92022 0.95637 0.87549 0.93844 1.21904 0.78425 1.02182 0.98463 1.47222 1.06763 1.20419 1.58172 1.21853 0.95494 0.89291 0.98444 1.16157 0.82686 0.82447 0.78902 1.90809 1.61803 1.42848 1.40426 1.23859 0.96768 0.92539 0.98699 1.71479 0.98886 1.26841 1.23789 1.26496 0.99548 0.89787 0.96138 1.47377 1.05765 1.23122 1.34266 1.22173 0.85677 0.95158 1.02326 1.74467 0.89878 1.23452 1.20559 1.42810 1.77563 1.11906 1.04571 1.19188 1.36452 0.93563 0.87710 0.91801 1.24748 1.02763 0.95916 0.97642 1.69766 1.50319 1.08252 1.28048 0.86338 0.77495 0.78634 0.84631 1.22221 1.21962 1.20939 0.94624 0.92677 0.93357 0.90678 0.90301 0.93104 0.89810 0.92118 0.76252 0.89475 0.88177 0.88323 0.76052 0.93952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 9.49 37.16 0.35 -2.79 16 2 C 0.15 3.30 3.20 -67.93 -0.22 3.09 16 3 H 0.04 0.94 8.08 -51.93 -0.42 0.52 16 4 C 0.11 2.09 5.11 -4.04 -0.02 2.07 16 5 N -0.59 -11.49 2.77 -182.69 -0.51 -12.00 16 6 C 0.09 1.44 9.29 59.85 0.56 1.99 16 7 C 0.62 14.01 7.09 -12.32 -0.09 13.92 16 8 O -0.49 -13.09 14.15 5.32 0.08 -13.01 16 9 C 0.16 3.28 7.58 -156.36 -1.18 2.09 16 10 N -0.48 -7.79 8.13 -12.36 -0.10 -7.89 16 11 C 0.18 2.09 12.62 -90.48 -1.14 0.94 16 12 N -0.31 -4.16 3.72 -69.39 -0.26 -4.42 16 13 C 0.09 0.64 11.38 59.85 0.68 1.33 16 14 N -0.25 -4.82 12.09 32.07 0.39 -4.43 16 15 N -0.72 -20.02 4.52 -53.43 -0.24 -20.27 16 16 C -0.24 -7.13 9.93 -15.06 -0.15 -7.28 16 17 H 0.06 1.85 7.83 -52.49 -0.41 1.44 16 18 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 19 N -0.92 -30.29 13.06 55.49 0.72 -29.56 16 20 Si 0.90 23.89 29.55 -169.99 -5.02 18.87 16 21 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 22 H -0.29 -7.84 7.11 56.52 0.40 -7.44 16 23 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 24 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.07 1.07 8.07 -51.93 -0.42 0.65 16 28 H 0.08 1.54 7.50 -51.93 -0.39 1.15 16 29 H 0.05 0.69 8.13 -51.93 -0.42 0.26 16 30 H 0.08 1.41 5.89 -51.93 -0.31 1.11 16 31 H 0.06 0.83 8.03 -51.93 -0.42 0.41 16 32 H 0.22 1.28 8.06 -52.49 -0.42 0.85 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.40 12.12 4.80 -40.82 -0.20 11.93 16 37 H 0.25 8.02 8.31 -40.82 -0.34 7.68 16 LS Contribution 314.04 15.07 4.73 4.73 Total: -1.00 -40.53 314.04 -6.59 -47.13 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -5.07 Total: 6.02 kcal Atomic # 6 Polarization: 16.14 SS G_CDS: -1.31 Total: 14.83 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: 0.01 Total: -78.57 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.08 Total: -13.01 kcal Atomic # 14 Polarization: 23.89 SS G_CDS: -5.02 Total: 18.87 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -40.53 -6.59 -47.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507077090.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.181 kcal (2) G-P(sol) polarization free energy of solvation -40.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds