Wall clock time and date at job start Mon Mar 30 2020 00:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46940 * 2 1 4 4 C 1.53001 * 109.46991 * 120.00083 * 2 1 3 5 5 N 1.46500 * 109.46833 * 175.00140 * 4 2 1 6 6 C 1.46498 * 120.00213 * 90.00291 * 5 4 2 7 7 C 1.34782 * 119.99828 * 269.99547 * 5 4 2 8 8 O 1.21548 * 120.00031 * 4.98425 * 7 5 4 9 9 C 1.47866 * 119.99780 * 184.98438 * 7 5 4 10 10 N 1.34550 * 126.05080 * 6.43452 * 9 7 5 11 11 C 1.30872 * 107.27142 * 180.02562 * 10 9 7 12 12 N 1.34590 * 107.62505 * 0.02562 * 11 10 9 13 13 C 1.46500 * 125.74904 * 180.02562 * 12 11 10 14 14 N 1.28852 * 108.49700 * 359.73090 * 12 11 10 15 15 N 1.46494 * 109.46964 * 240.00084 * 2 1 3 16 16 C 1.36937 * 120.00126 * 85.00165 * 15 2 1 17 17 H 1.07999 * 119.99853 * 359.97438 * 16 15 2 18 18 C 1.38816 * 120.00021 * 179.97438 * 16 15 2 19 19 N 1.31620 * 119.99956 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99908 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47201 * 89.99939 * 20 18 16 22 22 H 1.48503 * 109.47355 * 209.99694 * 20 18 16 23 23 H 1.48503 * 109.47396 * 329.99904 * 20 18 16 24 24 H 1.08997 * 109.46866 * 300.00047 * 1 2 3 25 25 H 1.08999 * 109.47146 * 59.99708 * 1 2 3 26 26 H 1.09005 * 109.46901 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47279 * 295.00081 * 4 2 1 28 28 H 1.08999 * 109.47479 * 55.00035 * 4 2 1 29 29 H 1.08997 * 109.47497 * 95.28514 * 6 5 4 30 30 H 1.09002 * 109.47316 * 215.28850 * 6 5 4 31 31 H 1.08998 * 109.46808 * 335.28506 * 6 5 4 32 32 H 1.07998 * 126.18832 * 180.02562 * 11 10 9 33 33 H 1.08997 * 109.46671 * 89.99985 * 13 12 11 34 34 H 1.09000 * 109.46853 * 209.99912 * 13 12 11 35 35 H 1.09003 * 109.46794 * 329.99910 * 13 12 11 36 36 H 0.97001 * 120.00075 * 264.99601 * 15 2 1 37 37 H 0.97000 * 119.99695 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5001 -0.8264 1.1906 6 6 4.3343 0.2340 1.7613 7 6 4.0758 -1.8987 0.6116 8 8 3.3871 -2.7337 0.0584 9 6 5.5452 -2.0594 0.6493 10 7 6.4096 -1.2818 1.3264 11 6 7.6110 -1.7506 1.1031 12 7 7.4881 -2.8154 0.2892 13 6 8.5896 -3.6409 -0.2124 14 7 6.2380 -2.9901 0.0304 15 7 2.0183 -0.6906 -1.1961 16 6 2.1491 -0.0074 -2.3757 17 1 1.8919 1.0403 -2.4243 18 6 2.6123 -0.6617 -3.5090 19 7 2.9262 -1.9385 -3.4497 20 14 2.7900 0.2700 -5.1182 21 1 4.1519 0.8561 -5.2031 22 1 2.5804 -0.6617 -6.2555 23 1 1.7792 1.3564 -5.1755 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.7516 -0.1584 2.1370 28 1 1.6054 -1.7198 1.2952 29 1 4.6203 -0.0361 2.7778 30 1 5.2301 0.3588 1.1528 31 1 3.7733 1.1684 1.7778 32 1 8.5339 -1.3546 1.5002 33 1 8.7742 -4.4609 0.4816 34 1 8.3252 -4.0445 -1.1898 35 1 9.4888 -3.0313 -0.3021 36 1 2.2491 -1.6317 -1.1526 37 1 3.2503 -2.3956 -4.2415 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507077090.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:47 Heat of formation + Delta-G solvation = 64.116649 kcal Electronic energy + Delta-G solvation = -21121.331581 eV Core-core repulsion = 17936.160615 eV Total energy + Delta-G solvation = -3185.170965 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.34837 -40.69795 -37.55564 -36.15552 -35.27814 -33.80919 -32.68685 -30.61836 -29.09229 -27.98596 -26.87636 -25.69184 -24.30313 -23.04104 -21.59550 -20.55234 -19.34093 -18.42782 -17.71691 -17.38316 -17.22813 -16.72002 -16.23829 -15.78269 -15.55700 -14.86930 -14.57511 -14.17278 -14.05686 -13.83920 -13.70923 -13.51324 -13.33160 -13.02744 -12.84551 -12.77229 -12.55979 -12.38071 -12.14459 -11.84800 -11.58855 -11.39794 -11.22132 -11.04582 -10.90150 -10.46946 -9.46491 -8.87968 -7.81502 -5.11431 0.46497 1.24596 1.39746 1.42459 1.43615 1.52031 2.09964 2.48124 2.57777 3.16657 3.46124 3.53956 3.89602 4.02030 4.21285 4.36577 4.41526 4.45448 4.53512 4.64775 4.67376 4.73408 4.85921 4.91223 4.97521 5.12523 5.13973 5.29813 5.42999 5.49582 5.56663 5.72995 5.84112 6.34665 6.41478 7.02755 7.29350 7.44479 8.31553 8.54153 9.39560 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.015418 B = 0.007579 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.564585 B = 3693.580300 C = 4905.864427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.142 3.858 3 H 0.049 0.951 4 C 0.116 3.884 5 N -0.589 5.589 6 C 0.093 3.907 7 C 0.600 3.400 8 O -0.550 6.550 9 C 0.127 3.873 10 N -0.496 5.496 11 C 0.198 3.802 12 N -0.306 5.306 13 C 0.076 3.924 14 N -0.296 5.296 15 N -0.741 5.741 16 C -0.234 4.234 17 H 0.072 0.928 18 C -0.086 4.086 19 N -0.961 5.961 20 Si 0.969 3.031 21 H -0.291 1.291 22 H -0.299 1.299 23 H -0.266 1.266 24 H 0.084 0.916 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.130 0.870 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.286 0.714 33 H 0.111 0.889 34 H 0.083 0.917 35 H 0.146 0.854 36 H 0.385 0.615 37 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.380 3.053 15.075 20.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.033 3.967 3 H 0.067 0.933 4 C -0.007 4.007 5 N -0.321 5.321 6 C -0.049 4.049 7 C 0.385 3.615 8 O -0.425 6.425 9 C -0.152 4.152 10 N -0.223 5.223 11 C -0.096 4.096 12 N -0.101 5.101 13 C -0.063 4.063 14 N -0.137 5.137 15 N -0.386 5.386 16 C -0.367 4.367 17 H 0.090 0.910 18 C -0.278 4.278 19 N -0.612 5.612 20 Si 0.798 3.202 21 H -0.219 1.219 22 H -0.226 1.226 23 H -0.191 1.191 24 H 0.103 0.897 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.147 0.853 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.301 0.699 33 H 0.129 0.871 34 H 0.102 0.898 35 H 0.164 0.836 36 H 0.222 0.778 37 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 12.631 2.515 14.485 19.383 hybrid contribution 0.332 -0.273 -1.444 1.507 sum 12.963 2.242 13.041 18.524 Atomic orbital electron populations 1.22234 0.97039 1.00627 1.01317 1.21022 0.93417 0.95552 0.86746 0.93314 1.21967 0.78115 1.01653 0.98928 1.47417 1.07444 1.20255 1.57006 1.22023 0.94822 0.88984 0.99049 1.16747 0.83948 0.82547 0.78306 1.90752 1.63467 1.45012 1.43234 1.23512 0.96258 0.94411 1.01022 1.71391 0.99795 1.26990 1.24100 1.27679 1.00233 0.87945 0.93757 1.47791 1.04768 1.23793 1.33753 1.22708 0.85183 0.96427 1.01972 1.74344 0.92727 1.24611 1.22044 1.43108 1.77983 1.11601 1.05912 1.19630 1.34414 0.93898 0.88713 0.90960 1.25627 1.03773 0.96862 1.01498 1.70006 1.52477 1.10256 1.28432 0.85199 0.77715 0.77439 0.79812 1.21855 1.22562 1.19075 0.89747 0.94547 0.94614 0.85261 0.92148 0.90707 0.91150 0.89858 0.69886 0.87102 0.89781 0.83556 0.77752 0.94927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.65 9.49 71.98 0.68 -4.96 16 2 C 0.14 6.05 3.20 44.99 0.14 6.19 16 3 H 0.05 2.01 8.08 -2.39 -0.02 2.00 16 4 C 0.12 4.17 5.11 86.38 0.44 4.61 16 5 N -0.59 -22.76 2.77 -850.17 -2.36 -25.12 16 6 C 0.09 2.71 9.29 127.77 1.19 3.90 16 7 C 0.60 28.49 7.09 86.79 0.62 29.10 16 8 O -0.55 -31.53 14.15 -3.87 -0.05 -31.58 16 9 C 0.13 5.29 7.58 137.13 1.04 6.33 16 10 N -0.50 -15.32 8.13 -193.03 -1.57 -16.89 16 11 C 0.20 4.10 12.62 180.30 2.27 6.38 16 12 N -0.31 -7.79 3.72 -373.45 -1.39 -9.18 16 13 C 0.08 0.93 11.38 127.77 1.45 2.39 16 14 N -0.30 -12.00 12.09 -52.44 -0.63 -12.63 16 15 N -0.74 -42.15 4.52 -322.95 -1.46 -43.61 16 16 C -0.23 -14.29 9.93 84.03 0.83 -13.45 16 17 H 0.07 4.18 7.83 -2.91 -0.02 4.15 16 18 C -0.09 -5.44 5.50 84.86 0.47 -4.97 16 19 N -0.96 -66.41 13.06 21.65 0.28 -66.13 16 20 Si 0.97 50.32 29.55 68.60 2.03 52.34 16 21 H -0.29 -14.79 7.11 99.48 0.71 -14.08 16 22 H -0.30 -15.63 7.11 99.48 0.71 -14.93 16 23 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 24 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 27 H 0.13 3.20 8.07 -2.39 -0.02 3.18 16 28 H 0.06 2.41 7.50 -2.39 -0.02 2.39 16 29 H 0.07 1.82 8.13 -2.39 -0.02 1.80 16 30 H 0.07 2.28 5.89 -2.39 -0.01 2.27 16 31 H 0.08 2.02 8.03 -2.39 -0.02 2.00 16 32 H 0.29 1.60 8.06 -2.91 -0.02 1.57 16 33 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.15 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.39 24.52 4.80 -92.71 -0.45 24.08 16 37 H 0.24 16.28 8.31 -92.71 -0.77 15.51 16 Total: -1.00 -96.48 314.04 4.62 -91.86 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.63 Total: 25.44 kcal Atomic # 6 Polarization: 26.37 SS G_CDS: 9.14 Total: 35.51 kcal Atomic # 7 Polarization: -166.44 SS G_CDS: -7.13 Total: -173.57 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -0.05 Total: -31.58 kcal Atomic # 14 Polarization: 50.32 SS G_CDS: 2.03 Total: 52.34 kcal Total: -96.48 4.62 -91.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507077090.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.977 kcal (2) G-P(sol) polarization free energy of solvation -96.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds