Wall clock time and date at job start Mon Mar 30 2020 00:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.46788 * 2 1 4 4 C 1.36938 * 119.99871 * 264.28718 * 3 2 1 5 5 H 1.08006 * 119.99998 * 188.63737 * 4 3 2 6 6 C 1.38816 * 119.99907 * 8.63992 * 4 3 2 7 7 N 1.31614 * 120.00000 * 24.60105 * 6 4 3 8 8 Si 1.86804 * 119.99791 * 204.60440 * 6 4 3 9 9 H 1.48496 * 109.47355 * 85.02596 * 8 6 4 10 10 H 1.48504 * 109.47040 * 205.02695 * 8 6 4 11 11 H 1.48508 * 109.47095 * 325.02436 * 8 6 4 12 12 C 1.46495 * 120.00239 * 84.28831 * 3 2 1 13 13 C 1.53000 * 109.47449 * 269.99955 * 12 3 2 14 14 C 1.52995 * 109.47626 * 180.02562 * 13 12 3 15 15 N 1.46500 * 109.47364 * 180.02562 * 14 13 12 16 16 C 1.34781 * 120.00022 * 180.02562 * 15 14 13 17 17 O 1.21617 * 119.99703 * 359.97438 * 16 15 14 18 18 C 1.47228 * 119.99671 * 180.02562 * 16 15 14 19 19 C 1.37015 * 127.18441 * 179.97438 * 18 16 15 20 20 N 1.33321 * 106.37032 * 180.02562 * 19 18 16 21 21 N 1.28516 * 109.43717 * 0.02562 * 20 19 18 22 22 N 1.28706 * 110.64365 * 359.97438 * 21 20 19 23 23 H 0.97003 * 126.04082 * 180.02562 * 22 21 20 24 24 H 1.08996 * 109.47296 * 299.99978 * 1 2 3 25 25 H 1.08997 * 109.47068 * 60.00013 * 1 2 3 26 26 H 1.09002 * 109.46661 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47296 * 240.00022 * 2 1 3 28 28 H 1.09003 * 109.46949 * 119.99280 * 2 1 3 29 29 H 0.97000 * 119.99662 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.47130 * 149.99980 * 12 3 2 31 31 H 1.09003 * 109.47234 * 30.00305 * 12 3 2 32 32 H 1.08996 * 109.47143 * 59.99584 * 13 12 3 33 33 H 1.09003 * 109.47188 * 300.00378 * 13 12 3 34 34 H 1.09003 * 109.47045 * 59.99969 * 14 13 12 35 35 H 1.08998 * 109.46790 * 300.00069 * 14 13 12 36 36 H 0.97001 * 119.99836 * 0.02562 * 15 14 13 37 37 H 1.07992 * 126.81486 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3578 1.9874 -1.1800 5 1 2.8470 2.9503 -1.1714 6 6 2.0731 1.3644 -2.3874 7 7 1.0960 0.4857 -2.4602 8 14 3.0771 1.7730 -3.9088 9 1 4.3047 0.9378 -3.9309 10 1 2.2690 1.4975 -5.1239 11 1 3.4556 3.2088 -3.8812 12 6 2.1434 2.1140 1.2624 13 6 0.8337 2.8475 1.5583 14 6 0.9645 3.6133 2.8764 15 7 -0.2898 4.3151 3.1600 16 6 -0.4073 5.0603 4.2769 17 8 0.5277 5.1497 5.0494 18 6 -1.6681 5.7651 4.5622 19 6 -1.9477 6.5564 5.6452 20 7 -3.2014 6.9811 5.4866 21 7 -3.6808 6.5009 4.3951 22 7 -2.8073 5.7661 3.8005 23 1 -2.9331 5.2960 2.9614 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 0.8969 0.0506 -3.3040 30 1 2.9551 2.8373 1.1838 31 1 2.3579 1.4134 2.0694 32 1 0.0220 2.1243 1.6369 33 1 0.6192 3.5481 0.7513 34 1 1.7762 4.3366 2.7973 35 1 1.1792 2.9130 3.6836 36 1 -1.0356 4.2434 2.5440 37 1 -1.2842 6.7896 6.4648 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566556475.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:33 Heat of formation + Delta-G solvation = 81.631910 kcal Electronic energy + Delta-G solvation = -19817.420073 eV Core-core repulsion = 16633.008626 eV Total energy + Delta-G solvation = -3184.411447 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.65894 -39.71800 -36.71784 -35.27641 -33.88470 -32.34626 -31.59682 -30.41627 -28.98233 -25.90797 -24.38644 -23.51166 -22.85537 -21.32914 -21.25212 -20.25623 -19.31613 -17.00469 -16.82351 -16.69742 -16.19333 -15.50692 -15.03310 -14.60025 -14.31939 -14.25579 -13.56262 -13.22409 -12.79933 -12.51562 -11.97069 -11.84081 -11.63672 -11.53214 -11.43147 -11.09810 -10.98187 -10.78563 -10.58188 -10.43573 -10.35393 -9.88406 -9.87182 -9.66928 -9.43730 -9.26630 -8.43335 -6.97987 -5.84333 -3.15635 0.57263 1.98233 2.10015 2.75875 2.81316 3.34398 3.42254 3.43231 4.01250 4.38627 4.43635 4.66302 4.83044 5.09014 5.26771 5.31716 5.62680 5.66440 5.71364 5.91809 5.96691 6.21112 6.28452 6.30691 6.50679 6.63064 6.74907 6.84137 7.01166 7.07135 7.12920 7.59653 7.70029 7.75227 7.92492 8.01080 8.29291 9.17078 9.80091 10.24650 11.19495 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.028933 B = 0.003447 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.533661 B = 8121.984646 C = 8221.968236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.165 3.835 3 N -0.597 5.597 4 C -0.252 4.252 5 H 0.074 0.926 6 C -0.002 4.002 7 N -0.897 5.897 8 Si 0.896 3.104 9 H -0.288 1.288 10 H -0.293 1.293 11 H -0.282 1.282 12 C 0.156 3.844 13 C -0.157 4.157 14 C 0.119 3.881 15 N -0.718 5.718 16 C 0.590 3.410 17 O -0.516 6.516 18 C -0.063 4.063 19 C 0.030 3.970 20 N -0.271 5.271 21 N -0.048 5.048 22 N -0.374 5.374 23 H 0.452 0.548 24 H 0.012 0.988 25 H 0.090 0.910 26 H 0.018 0.982 27 H 0.087 0.913 28 H 0.003 0.997 29 H 0.252 0.748 30 H 0.048 0.952 31 H 0.041 0.959 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.396 0.604 37 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.371 6.225 10.680 13.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.040 3.960 3 N -0.318 5.318 4 C -0.380 4.380 5 H 0.091 0.909 6 C -0.199 4.199 7 N -0.543 5.543 8 Si 0.727 3.273 9 H -0.216 1.216 10 H -0.220 1.220 11 H -0.208 1.208 12 C 0.028 3.972 13 C -0.198 4.198 14 C -0.004 4.004 15 N -0.369 5.369 16 C 0.373 3.627 17 O -0.390 6.390 18 C -0.198 4.198 19 C -0.129 4.129 20 N -0.136 5.136 21 N -0.030 5.030 22 N -0.101 5.101 23 H 0.299 0.701 24 H 0.031 0.969 25 H 0.108 0.892 26 H 0.037 0.963 27 H 0.105 0.895 28 H 0.021 0.979 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.229 0.771 37 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -6.075 6.791 11.141 14.393 hybrid contribution 0.865 -0.568 -1.745 2.029 sum -5.209 6.223 9.396 12.415 Atomic orbital electron populations 1.22409 0.99409 0.98198 1.00876 1.20808 0.92421 0.84486 0.98247 1.44255 1.75731 1.10210 1.01576 1.19287 1.31475 1.03705 0.83576 0.90859 1.24720 0.97908 0.99956 0.97351 1.70143 1.27265 1.31896 1.24948 0.86386 0.80373 0.77874 0.82706 1.21557 1.21978 1.20771 1.20663 0.93455 0.94218 0.88865 1.22778 1.03304 0.99742 0.93970 1.21670 0.84299 0.95553 0.98916 1.46111 1.18101 1.49575 1.23089 1.16797 0.84850 0.78938 0.82121 1.90873 1.38171 1.62493 1.47484 1.22521 0.90830 1.09065 0.97348 1.23927 0.93986 0.96228 0.98753 1.75004 1.09121 1.20086 1.09440 1.78230 1.15658 1.05538 1.03576 1.45637 1.09162 1.34492 1.20811 0.70072 0.96947 0.89185 0.96268 0.89476 0.97909 0.93785 0.93409 0.94089 0.91498 0.91342 0.91087 0.91223 0.77051 0.77845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 9.58 37.16 0.36 -2.84 16 2 C 0.17 3.76 5.64 -4.04 -0.02 3.74 16 3 N -0.60 -13.66 2.54 -173.23 -0.44 -14.10 16 4 C -0.25 -6.40 9.70 -15.06 -0.15 -6.54 16 5 H 0.07 1.84 7.93 -52.48 -0.42 1.42 16 6 C 0.00 -0.06 4.91 -17.43 -0.09 -0.14 16 7 N -0.90 -23.88 8.54 55.49 0.47 -23.40 16 8 Si 0.90 20.74 29.62 -169.99 -5.03 15.71 16 9 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 12 C 0.16 2.84 5.71 -4.04 -0.02 2.81 16 13 C -0.16 -2.37 5.53 -26.73 -0.15 -2.52 16 14 C 0.12 1.49 5.67 -4.04 -0.02 1.46 16 15 N -0.72 -7.55 5.55 -61.45 -0.34 -7.90 16 16 C 0.59 6.89 7.81 -12.61 -0.10 6.79 16 17 O -0.52 -7.71 16.92 5.26 0.09 -7.62 16 18 C -0.06 -0.63 7.17 -82.33 -0.59 -1.22 16 19 C 0.03 0.32 11.87 -17.35 -0.21 0.11 16 20 N -0.27 -3.23 12.35 30.47 0.38 -2.85 16 21 N -0.05 -0.52 13.35 60.35 0.81 0.28 16 22 N -0.37 -3.13 6.97 33.31 0.23 -2.89 16 23 H 0.45 2.18 8.32 -190.33 -1.58 0.59 16 24 H 0.01 0.23 5.98 -51.93 -0.31 -0.08 16 25 H 0.09 2.21 6.28 -51.93 -0.33 1.88 16 26 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.09 2.24 5.87 -51.93 -0.31 1.93 16 28 H 0.00 0.06 7.97 -51.93 -0.41 -0.36 16 29 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 30 H 0.05 0.85 8.03 -51.93 -0.42 0.43 16 31 H 0.04 0.69 7.95 -51.93 -0.41 0.28 16 32 H 0.07 1.05 5.93 -51.93 -0.31 0.74 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.40 3.18 7.74 -40.82 -0.32 2.86 16 37 H 0.20 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 311.69 15.07 4.70 4.70 Total: -1.00 -30.31 311.69 -6.19 -36.49 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -6.06 Total: -0.06 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -0.99 Total: 1.64 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: 1.11 Total: -50.86 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: 0.09 Total: -7.62 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.31 -6.19 -36.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566556475.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.126 kcal (2) G-P(sol) polarization free energy of solvation -30.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds