Wall clock time and date at job start Mon Mar 30 2020 00:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.46788 * 2 1 4 4 C 1.36938 * 119.99871 * 264.28718 * 3 2 1 5 5 H 1.08006 * 119.99998 * 188.63737 * 4 3 2 6 6 C 1.38816 * 119.99907 * 8.63992 * 4 3 2 7 7 N 1.31614 * 120.00000 * 24.60105 * 6 4 3 8 8 Si 1.86804 * 119.99791 * 204.60440 * 6 4 3 9 9 H 1.48496 * 109.47355 * 85.02596 * 8 6 4 10 10 H 1.48504 * 109.47040 * 205.02695 * 8 6 4 11 11 H 1.48508 * 109.47095 * 325.02436 * 8 6 4 12 12 C 1.46495 * 120.00239 * 84.28831 * 3 2 1 13 13 C 1.53000 * 109.47449 * 269.99955 * 12 3 2 14 14 C 1.52995 * 109.47626 * 180.02562 * 13 12 3 15 15 N 1.46500 * 109.47364 * 180.02562 * 14 13 12 16 16 C 1.34781 * 120.00022 * 180.02562 * 15 14 13 17 17 O 1.21617 * 119.99703 * 359.97438 * 16 15 14 18 18 C 1.47228 * 119.99671 * 180.02562 * 16 15 14 19 19 C 1.37015 * 127.18441 * 179.97438 * 18 16 15 20 20 N 1.33321 * 106.37032 * 180.02562 * 19 18 16 21 21 N 1.28516 * 109.43717 * 0.02562 * 20 19 18 22 22 N 1.28706 * 110.64365 * 359.97438 * 21 20 19 23 23 H 0.97003 * 126.04082 * 180.02562 * 22 21 20 24 24 H 1.08996 * 109.47296 * 299.99978 * 1 2 3 25 25 H 1.08997 * 109.47068 * 60.00013 * 1 2 3 26 26 H 1.09002 * 109.46661 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47296 * 240.00022 * 2 1 3 28 28 H 1.09003 * 109.46949 * 119.99280 * 2 1 3 29 29 H 0.97000 * 119.99662 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.47130 * 149.99980 * 12 3 2 31 31 H 1.09003 * 109.47234 * 30.00305 * 12 3 2 32 32 H 1.08996 * 109.47143 * 59.99584 * 13 12 3 33 33 H 1.09003 * 109.47188 * 300.00378 * 13 12 3 34 34 H 1.09003 * 109.47045 * 59.99969 * 14 13 12 35 35 H 1.08998 * 109.46790 * 300.00069 * 14 13 12 36 36 H 0.97001 * 119.99836 * 0.02562 * 15 14 13 37 37 H 1.07992 * 126.81486 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3578 1.9874 -1.1800 5 1 2.8470 2.9503 -1.1714 6 6 2.0731 1.3644 -2.3874 7 7 1.0960 0.4857 -2.4602 8 14 3.0771 1.7730 -3.9088 9 1 4.3047 0.9378 -3.9309 10 1 2.2690 1.4975 -5.1239 11 1 3.4556 3.2088 -3.8812 12 6 2.1434 2.1140 1.2624 13 6 0.8337 2.8475 1.5583 14 6 0.9645 3.6133 2.8764 15 7 -0.2898 4.3151 3.1600 16 6 -0.4073 5.0603 4.2769 17 8 0.5277 5.1497 5.0494 18 6 -1.6681 5.7651 4.5622 19 6 -1.9477 6.5564 5.6452 20 7 -3.2014 6.9811 5.4866 21 7 -3.6808 6.5009 4.3951 22 7 -2.8073 5.7661 3.8005 23 1 -2.9331 5.2960 2.9614 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 0.8969 0.0506 -3.3040 30 1 2.9551 2.8373 1.1838 31 1 2.3579 1.4134 2.0694 32 1 0.0220 2.1243 1.6369 33 1 0.6192 3.5481 0.7513 34 1 1.7762 4.3366 2.7973 35 1 1.1792 2.9130 3.6836 36 1 -1.0356 4.2434 2.5440 37 1 -1.2842 6.7896 6.4648 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566556475.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:33 Heat of formation + Delta-G solvation = 59.986400 kcal Electronic energy + Delta-G solvation = -19818.358693 eV Core-core repulsion = 16633.008626 eV Total energy + Delta-G solvation = -3185.350066 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.46225 -40.70211 -38.29056 -36.47412 -34.76176 -33.75743 -32.69064 -31.93273 -30.60238 -27.27267 -25.69188 -24.74667 -23.84068 -22.65133 -22.25628 -21.80627 -20.23055 -18.70071 -17.77952 -17.53523 -17.32062 -16.73874 -16.58719 -15.69261 -15.58359 -15.34347 -15.03803 -14.78506 -14.32196 -13.69217 -13.36829 -13.31529 -13.15772 -12.90165 -12.61800 -12.55845 -12.44326 -12.14895 -12.10770 -11.88517 -11.67173 -11.44976 -11.34936 -11.15787 -10.73158 -10.32585 -10.23135 -8.81128 -7.78658 -5.09271 -0.24526 1.14621 1.38446 1.48997 1.53977 1.58338 1.86728 1.92118 2.56381 3.23718 3.31387 3.57907 3.65741 3.87709 4.04925 4.13685 4.25890 4.47533 4.68248 4.78555 4.80960 4.90598 4.92177 5.06280 5.17891 5.24367 5.30955 5.35284 5.56057 5.60776 5.65914 5.84452 6.20368 6.23799 6.39578 6.85734 7.11543 7.25272 7.97828 8.36955 9.22976 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.028933 B = 0.003447 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.533661 B = 8121.984646 C = 8221.968236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.166 3.834 3 N -0.612 5.612 4 C -0.255 4.255 5 H 0.072 0.928 6 C -0.049 4.049 7 N -0.915 5.915 8 Si 0.949 3.051 9 H -0.293 1.293 10 H -0.300 1.300 11 H -0.276 1.276 12 C 0.149 3.851 13 C -0.136 4.136 14 C 0.131 3.869 15 N -0.709 5.709 16 C 0.598 3.402 17 O -0.549 6.549 18 C -0.063 4.063 19 C 0.030 3.970 20 N -0.296 5.296 21 N -0.058 5.058 22 N -0.351 5.351 23 H 0.467 0.533 24 H 0.033 0.967 25 H 0.057 0.943 26 H 0.028 0.972 27 H 0.053 0.947 28 H 0.023 0.977 29 H 0.244 0.756 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.410 0.590 37 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.574 6.685 11.560 14.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.041 3.959 3 N -0.334 5.334 4 C -0.385 4.385 5 H 0.090 0.910 6 C -0.244 4.244 7 N -0.562 5.562 8 Si 0.779 3.221 9 H -0.221 1.221 10 H -0.227 1.227 11 H -0.201 1.201 12 C 0.023 3.977 13 C -0.177 4.177 14 C 0.007 3.993 15 N -0.360 5.360 16 C 0.382 3.618 17 O -0.425 6.425 18 C -0.199 4.199 19 C -0.130 4.130 20 N -0.160 5.160 21 N -0.041 5.041 22 N -0.082 5.082 23 H 0.318 0.682 24 H 0.052 0.948 25 H 0.076 0.924 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.041 0.959 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.246 0.754 37 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -6.308 7.264 12.014 15.391 hybrid contribution 0.953 -0.714 -1.974 2.305 sum -5.355 6.550 10.041 13.130 Atomic orbital electron populations 1.22182 0.98401 0.98628 1.00230 1.20697 0.93232 0.84553 0.97462 1.44398 1.76079 1.10611 1.02336 1.19508 1.30730 1.03534 0.84700 0.90970 1.25280 0.98889 1.00758 0.99457 1.70293 1.28189 1.32940 1.24775 0.85553 0.78751 0.77721 0.80056 1.22086 1.22743 1.20095 1.20842 0.94919 0.94609 0.87365 1.22392 1.01279 0.99211 0.94812 1.21392 0.85014 0.95450 0.97446 1.45905 1.17982 1.48955 1.23134 1.16800 0.84783 0.78519 0.81674 1.90865 1.39388 1.63687 1.48597 1.22232 0.90634 1.09288 0.97700 1.24292 0.93731 0.95706 0.99246 1.75007 1.09899 1.21059 1.10059 1.78187 1.16112 1.06014 1.03743 1.45611 1.08160 1.33478 1.20933 0.68229 0.94816 0.92399 0.95300 0.92915 0.95928 0.94599 0.93278 0.92416 0.91667 0.92772 0.91284 0.90767 0.75434 0.76243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.61 9.58 71.98 0.69 -4.92 16 2 C 0.17 7.40 5.64 86.38 0.49 7.88 16 3 N -0.61 -27.42 2.54 -701.99 -1.78 -29.20 16 4 C -0.25 -12.86 9.70 84.03 0.82 -12.04 16 5 H 0.07 3.58 7.93 -2.91 -0.02 3.55 16 6 C -0.05 -2.54 4.91 84.86 0.42 -2.12 16 7 N -0.91 -49.27 8.54 21.65 0.18 -49.09 16 8 Si 0.95 42.89 29.62 68.60 2.03 44.92 16 9 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 10 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 11 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 12 C 0.15 5.13 5.71 86.38 0.49 5.62 16 13 C -0.14 -3.83 5.53 30.59 0.17 -3.66 16 14 C 0.13 2.95 5.67 86.38 0.49 3.44 16 15 N -0.71 -13.10 5.55 -466.57 -2.59 -15.69 16 16 C 0.60 12.66 7.81 86.61 0.68 13.34 16 17 O -0.55 -15.43 16.92 -4.09 -0.07 -15.50 16 18 C -0.06 -1.14 7.17 40.41 0.29 -0.85 16 19 C 0.03 0.58 11.87 84.18 1.00 1.58 16 20 N -0.30 -6.64 12.35 -57.50 -0.71 -7.35 16 21 N -0.06 -1.18 13.35 37.02 0.49 -0.69 16 22 N -0.35 -5.12 6.97 -48.52 -0.34 -5.46 16 23 H 0.47 3.32 8.32 -219.90 -1.83 1.49 16 24 H 0.03 1.22 5.98 -2.39 -0.01 1.20 16 25 H 0.06 2.81 6.28 -2.39 -0.02 2.80 16 26 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.05 2.72 5.87 -2.39 -0.01 2.71 16 28 H 0.02 0.90 7.97 -2.39 -0.02 0.89 16 29 H 0.24 13.06 8.31 -92.71 -0.77 12.29 16 30 H 0.05 1.66 8.03 -2.39 -0.02 1.65 16 31 H 0.06 1.79 7.95 -2.39 -0.02 1.77 16 32 H 0.06 1.87 5.93 -2.39 -0.01 1.85 16 33 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.41 5.41 7.74 -92.71 -0.72 4.69 16 37 H 0.22 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -64.05 311.69 1.31 -62.74 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -1.44 Total: 7.05 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 5.53 Total: 8.26 kcal Atomic # 7 Polarization: -102.73 SS G_CDS: -4.74 Total: -107.47 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.07 Total: -15.50 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -64.05 1.31 -62.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566556475.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.728 kcal (2) G-P(sol) polarization free energy of solvation -64.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds