Wall clock time and date at job start Mon Mar 30 2020 00:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47110 * 2 1 4 4 C 1.34819 * 126.59379 * 125.34019 * 3 2 1 5 5 C 1.36593 * 106.83574 * 180.14374 * 4 3 2 6 6 C 1.47526 * 125.76836 * 179.83925 * 5 4 3 7 7 O 1.21593 * 120.00379 * 359.71792 * 6 5 4 8 8 N 1.34777 * 120.00190 * 179.44711 * 6 5 4 9 9 C 1.46496 * 120.00344 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47047 * 179.97438 * 9 8 6 11 11 H 1.08994 * 109.47307 * 64.99745 * 10 9 8 12 12 C 1.53008 * 109.46881 * 184.99637 * 10 9 8 13 13 N 1.46492 * 109.47057 * 304.99335 * 10 9 8 14 14 C 1.36938 * 120.00050 * 155.00030 * 13 10 9 15 15 H 1.07996 * 119.99895 * 0.02562 * 14 13 10 16 16 C 1.38815 * 120.00182 * 180.02562 * 14 13 10 17 17 N 1.31622 * 119.99871 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 119.99907 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.46864 * 89.99911 * 18 16 14 20 20 H 1.48504 * 109.46863 * 209.99775 * 18 16 14 21 21 H 1.48497 * 109.47183 * 329.99859 * 18 16 14 22 22 N 1.34403 * 108.46030 * 359.58094 * 5 4 3 23 23 N 1.28757 * 109.52121 * 0.25655 * 22 5 4 24 24 H 1.09002 * 109.47155 * 59.99955 * 1 2 3 25 25 H 1.08994 * 109.47190 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46796 * 300.00528 * 1 2 3 27 27 H 1.08995 * 109.47216 * 239.99658 * 2 1 3 28 28 H 1.09003 * 109.46711 * 119.99749 * 2 1 3 29 29 H 1.07997 * 126.57976 * 0.02562 * 4 3 2 30 30 H 0.97004 * 119.99647 * 359.97438 * 8 6 5 31 31 H 1.08999 * 109.46681 * 299.99185 * 9 8 6 32 32 H 1.08993 * 109.47302 * 59.99555 * 9 8 6 33 33 H 1.09003 * 109.46945 * 60.00219 * 12 10 9 34 34 H 1.09001 * 109.46918 * 179.97438 * 12 10 9 35 35 H 1.08995 * 109.47218 * 300.00128 * 12 10 9 36 36 H 0.97004 * 120.00617 * 335.00919 * 13 10 9 37 37 H 0.96998 * 119.99571 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8766 1.9303 0.8830 5 6 3.0507 3.2322 0.5082 6 6 3.9080 4.2190 1.1920 7 8 4.5327 3.8976 2.1845 8 7 4.0031 5.4754 0.7135 9 6 4.8548 6.4552 1.3922 10 6 4.7851 7.7918 0.6508 11 1 3.7739 8.1927 0.7187 12 6 5.7684 8.7783 1.2843 13 7 5.1363 7.5883 -0.7568 14 6 4.6755 8.4569 -1.7099 15 1 4.0535 9.2921 -1.4239 16 6 5.0078 8.2638 -3.0438 17 7 4.5652 9.0989 -3.9598 18 14 6.0832 6.8186 -3.5387 19 1 5.2260 5.6441 -3.8397 20 1 6.8714 7.1784 -4.7448 21 1 7.0070 6.4848 -2.4250 22 7 2.3135 3.4606 -0.5921 23 7 1.6880 2.3845 -0.9219 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.3364 1.4361 1.7260 30 1 3.5082 5.7306 -0.0807 31 1 4.5087 6.5894 2.4170 32 1 5.8845 6.0979 1.4003 33 1 6.7797 8.3774 1.2164 34 1 5.7191 9.7303 0.7559 35 1 5.5071 8.9296 2.3316 36 1 5.6953 6.8383 -1.0138 37 1 4.7972 8.9637 -4.8919 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567065155.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:11 Heat of formation + Delta-G solvation = 69.705000 kcal Electronic energy + Delta-G solvation = -20010.383050 eV Core-core repulsion = 16825.454414 eV Total energy + Delta-G solvation = -3184.928636 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.24264 -39.17311 -36.44092 -35.63486 -33.58689 -31.88114 -31.49141 -30.45335 -29.26935 -26.17043 -24.82608 -23.53626 -22.83046 -21.89887 -20.23048 -20.01702 -18.22502 -17.53060 -16.30909 -16.27346 -15.84922 -15.35310 -14.81114 -14.70599 -14.35551 -14.10124 -13.58897 -13.25076 -12.80178 -12.76373 -12.50584 -12.32392 -12.21164 -12.04881 -11.87116 -11.59040 -11.20857 -10.87454 -10.76619 -10.49816 -10.36178 -10.06240 -9.92180 -9.56390 -9.36019 -8.94111 -8.70811 -7.28437 -5.74885 -3.11371 1.06093 1.77289 1.88300 3.38547 3.42705 3.45595 3.46215 3.49963 4.03593 4.18966 4.39092 4.62359 4.62533 4.70242 4.91878 5.05591 5.09594 5.26153 5.34422 5.38454 5.55216 5.61045 5.78641 5.82806 6.01658 6.13522 6.22045 6.23884 6.42896 6.69612 6.75205 6.99156 7.72940 8.00210 8.01557 8.41307 8.43909 9.21533 9.94131 10.12718 11.43222 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.018647 B = 0.005122 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.195881 B = 5465.085492 C = 6465.088686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.118 3.882 3 N -0.365 5.365 4 C 0.088 3.912 5 C -0.099 4.099 6 C 0.600 3.400 7 O -0.553 6.553 8 N -0.699 5.699 9 C 0.112 3.888 10 C 0.164 3.836 11 H 0.064 0.936 12 C -0.162 4.162 13 N -0.748 5.748 14 C -0.245 4.245 15 H 0.092 0.908 16 C 0.010 3.990 17 N -0.932 5.932 18 Si 0.879 3.121 19 H -0.282 1.282 20 H -0.292 1.292 21 H -0.278 1.278 22 N -0.195 5.195 23 N -0.063 5.063 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.203 0.797 30 H 0.419 0.581 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.063 0.937 35 H 0.043 0.957 36 H 0.362 0.638 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.510 -18.833 11.966 22.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.002 4.002 3 N -0.151 5.151 4 C -0.069 4.069 5 C -0.238 4.238 6 C 0.383 3.617 7 O -0.431 6.431 8 N -0.350 5.350 9 C -0.013 4.013 10 C 0.055 3.945 11 H 0.082 0.918 12 C -0.223 4.223 13 N -0.392 5.392 14 C -0.375 4.375 15 H 0.110 0.890 16 C -0.186 4.186 17 N -0.579 5.579 18 Si 0.710 3.290 19 H -0.209 1.209 20 H -0.218 1.218 21 H -0.204 1.204 22 N -0.069 5.069 23 N -0.044 5.044 24 H 0.094 0.906 25 H 0.100 0.900 26 H 0.083 0.917 27 H 0.116 0.884 28 H 0.122 0.878 29 H 0.220 0.780 30 H 0.256 0.744 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.195 0.805 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.016 -18.537 11.275 22.515 hybrid contribution 1.163 -1.292 -0.068 1.740 sum -4.853 -19.829 11.207 23.288 Atomic orbital electron populations 1.22086 0.92760 1.03568 1.04160 1.22005 0.96875 0.76380 1.04986 1.50649 1.31712 1.12370 1.20365 1.23334 0.93324 0.94091 0.96118 1.21570 1.07860 0.95088 0.99276 1.16771 0.80271 0.81532 0.83094 1.90766 1.46757 1.79448 1.26164 1.45864 1.47574 1.09867 1.31718 1.21819 0.94430 0.88945 0.96077 1.20489 0.98030 0.91310 0.84720 0.91839 1.22334 0.99918 1.01158 0.98870 1.42838 1.61617 1.32791 1.01926 1.19045 1.25869 1.06094 0.86496 0.89041 1.24630 1.00126 0.98142 0.95714 1.69696 1.49453 1.38006 1.00761 0.86629 0.80982 0.83594 0.77835 1.20853 1.21816 1.20417 1.74765 1.04439 1.17969 1.09737 1.82015 1.20454 0.90296 1.11587 0.90596 0.89981 0.91700 0.88414 0.87799 0.77996 0.74359 0.91086 0.91585 0.93315 0.91807 0.93831 0.80496 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 10.12 37.16 0.38 -0.50 16 2 C 0.12 0.65 7.26 -4.04 -0.03 0.62 16 3 N -0.37 -3.87 3.69 -61.06 -0.23 -4.09 16 4 C 0.09 0.99 11.27 -16.83 -0.19 0.80 16 5 C -0.10 -1.51 6.99 -83.55 -0.58 -2.09 16 6 C 0.60 10.16 7.82 -12.47 -0.10 10.06 16 7 O -0.55 -10.04 16.86 5.28 0.09 -9.95 16 8 N -0.70 -12.18 5.38 -61.36 -0.33 -12.51 16 9 C 0.11 1.85 5.23 -4.04 -0.02 1.83 16 10 C 0.16 3.05 3.05 -67.93 -0.21 2.85 16 11 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 12 C -0.16 -2.74 9.49 37.16 0.35 -2.39 16 13 N -0.75 -17.27 4.36 -53.43 -0.23 -17.50 16 14 C -0.25 -6.78 10.41 -15.06 -0.16 -6.94 16 15 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 16 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 17 N -0.93 -29.27 13.97 55.49 0.78 -28.50 16 18 Si 0.88 22.55 27.74 -169.99 -4.71 17.83 16 19 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 20 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 21 H -0.28 -6.79 6.52 56.52 0.37 -6.43 16 22 N -0.20 -3.32 12.04 32.85 0.40 -2.93 16 23 N -0.06 -0.94 13.65 60.35 0.82 -0.12 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.10 0.25 8.08 -51.93 -0.42 -0.17 16 29 H 0.20 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.42 7.83 7.82 -40.82 -0.32 7.51 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.36 8.48 5.66 -40.82 -0.23 8.25 16 37 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 322.92 15.07 4.87 4.87 Total: -1.00 -34.77 322.92 -4.42 -39.19 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -5.21 Total: 9.28 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -0.65 Total: 4.43 kcal Atomic # 7 Polarization: -66.86 SS G_CDS: 1.20 Total: -65.65 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.71 Total: 17.83 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.77 -4.42 -39.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567065155.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.892 kcal (2) G-P(sol) polarization free energy of solvation -34.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds