Wall clock time and date at job start Mon Mar 30 2020 00:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47110 * 2 1 4 4 C 1.34819 * 126.59379 * 125.34019 * 3 2 1 5 5 C 1.36593 * 106.83574 * 180.14374 * 4 3 2 6 6 C 1.47526 * 125.76836 * 179.83925 * 5 4 3 7 7 O 1.21593 * 120.00379 * 359.71792 * 6 5 4 8 8 N 1.34777 * 120.00190 * 179.44711 * 6 5 4 9 9 C 1.46496 * 120.00344 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47047 * 179.97438 * 9 8 6 11 11 H 1.08994 * 109.47307 * 64.99745 * 10 9 8 12 12 C 1.53008 * 109.46881 * 184.99637 * 10 9 8 13 13 N 1.46492 * 109.47057 * 304.99335 * 10 9 8 14 14 C 1.36938 * 120.00050 * 155.00030 * 13 10 9 15 15 H 1.07996 * 119.99895 * 0.02562 * 14 13 10 16 16 C 1.38815 * 120.00182 * 180.02562 * 14 13 10 17 17 N 1.31622 * 119.99871 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 119.99907 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.46864 * 89.99911 * 18 16 14 20 20 H 1.48504 * 109.46863 * 209.99775 * 18 16 14 21 21 H 1.48497 * 109.47183 * 329.99859 * 18 16 14 22 22 N 1.34403 * 108.46030 * 359.58094 * 5 4 3 23 23 N 1.28757 * 109.52121 * 0.25655 * 22 5 4 24 24 H 1.09002 * 109.47155 * 59.99955 * 1 2 3 25 25 H 1.08994 * 109.47190 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46796 * 300.00528 * 1 2 3 27 27 H 1.08995 * 109.47216 * 239.99658 * 2 1 3 28 28 H 1.09003 * 109.46711 * 119.99749 * 2 1 3 29 29 H 1.07997 * 126.57976 * 0.02562 * 4 3 2 30 30 H 0.97004 * 119.99647 * 359.97438 * 8 6 5 31 31 H 1.08999 * 109.46681 * 299.99185 * 9 8 6 32 32 H 1.08993 * 109.47302 * 59.99555 * 9 8 6 33 33 H 1.09003 * 109.46945 * 60.00219 * 12 10 9 34 34 H 1.09001 * 109.46918 * 179.97438 * 12 10 9 35 35 H 1.08995 * 109.47218 * 300.00128 * 12 10 9 36 36 H 0.97004 * 120.00617 * 335.00919 * 13 10 9 37 37 H 0.96998 * 119.99571 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8766 1.9303 0.8830 5 6 3.0507 3.2322 0.5082 6 6 3.9080 4.2190 1.1920 7 8 4.5327 3.8976 2.1845 8 7 4.0031 5.4754 0.7135 9 6 4.8548 6.4552 1.3922 10 6 4.7851 7.7918 0.6508 11 1 3.7739 8.1927 0.7187 12 6 5.7684 8.7783 1.2843 13 7 5.1363 7.5883 -0.7568 14 6 4.6755 8.4569 -1.7099 15 1 4.0535 9.2921 -1.4239 16 6 5.0078 8.2638 -3.0438 17 7 4.5652 9.0989 -3.9598 18 14 6.0832 6.8186 -3.5387 19 1 5.2260 5.6441 -3.8397 20 1 6.8714 7.1784 -4.7448 21 1 7.0070 6.4848 -2.4250 22 7 2.3135 3.4606 -0.5921 23 7 1.6880 2.3845 -0.9219 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.3364 1.4361 1.7260 30 1 3.5082 5.7306 -0.0807 31 1 4.5087 6.5894 2.4170 32 1 5.8845 6.0979 1.4003 33 1 6.7797 8.3774 1.2164 34 1 5.7191 9.7303 0.7559 35 1 5.5071 8.9296 2.3316 36 1 5.6953 6.8383 -1.0138 37 1 4.7972 8.9637 -4.8919 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567065155.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:10 Heat of formation + Delta-G solvation = 42.298065 kcal Electronic energy + Delta-G solvation = -20011.571504 eV Core-core repulsion = 16825.454414 eV Total energy + Delta-G solvation = -3186.117090 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.23099 -40.47666 -38.03581 -36.37439 -35.22327 -33.74649 -32.35777 -31.54661 -30.93221 -27.44280 -25.55795 -25.40703 -24.11435 -22.73277 -21.78649 -21.20287 -19.90205 -18.91244 -17.32663 -17.23999 -17.15074 -16.89234 -16.08633 -15.73995 -15.66613 -15.41196 -14.92934 -14.63211 -14.42066 -13.82375 -13.75532 -13.41395 -13.37025 -13.23681 -13.06217 -12.88837 -12.57062 -12.47816 -12.12831 -12.03059 -11.80006 -11.69317 -11.33397 -11.25484 -11.00895 -10.42753 -10.00849 -9.33374 -8.00597 -5.33124 0.16073 0.60718 1.14897 1.36050 1.39845 1.44422 2.17611 2.24567 2.48223 3.20186 3.32268 3.41883 3.58806 3.82761 3.92989 3.97160 3.99386 4.28582 4.34209 4.36577 4.59575 4.63158 4.74090 4.75371 4.85290 4.93036 5.03950 5.22753 5.26101 5.35766 5.50728 5.58325 5.81127 6.23292 6.43142 6.89907 7.09066 7.12097 7.84702 8.02355 9.20983 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.018647 B = 0.005122 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.195881 B = 5465.085492 C = 6465.088686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.105 3.895 3 N -0.349 5.349 4 C 0.114 3.886 5 C -0.131 4.131 6 C 0.602 3.398 7 O -0.567 6.567 8 N -0.708 5.708 9 C 0.120 3.880 10 C 0.160 3.840 11 H 0.057 0.943 12 C -0.154 4.154 13 N -0.749 5.749 14 C -0.221 4.221 15 H 0.064 0.936 16 C -0.056 4.056 17 N -0.981 5.981 18 Si 0.944 3.056 19 H -0.286 1.286 20 H -0.297 1.297 21 H -0.256 1.256 22 N -0.236 5.236 23 N -0.093 5.093 24 H 0.050 0.950 25 H 0.111 0.889 26 H 0.057 0.943 27 H 0.111 0.889 28 H 0.147 0.853 29 H 0.245 0.755 30 H 0.411 0.589 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.040 0.960 35 H 0.079 0.921 36 H 0.363 0.637 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.805 -21.796 14.166 26.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.013 4.013 3 N -0.134 5.134 4 C -0.044 4.044 5 C -0.272 4.272 6 C 0.387 3.613 7 O -0.446 6.446 8 N -0.358 5.358 9 C -0.004 4.004 10 C 0.052 3.948 11 H 0.075 0.925 12 C -0.214 4.214 13 N -0.394 5.394 14 C -0.352 4.352 15 H 0.082 0.918 16 C -0.248 4.248 17 N -0.632 5.632 18 Si 0.772 3.228 19 H -0.213 1.213 20 H -0.224 1.224 21 H -0.181 1.181 22 N -0.109 5.109 23 N -0.074 5.074 24 H 0.070 0.930 25 H 0.130 0.870 26 H 0.076 0.924 27 H 0.129 0.871 28 H 0.165 0.835 29 H 0.261 0.739 30 H 0.247 0.753 31 H 0.112 0.888 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.196 0.804 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.321 -21.535 13.526 25.981 hybrid contribution 0.834 -0.448 -0.620 1.132 sum -4.487 -21.983 12.905 25.883 Atomic orbital electron populations 1.22081 0.92659 1.04984 1.02567 1.22605 0.97010 0.73873 1.07788 1.51034 1.30386 1.13256 1.18737 1.23899 0.91811 0.92624 0.96102 1.21614 1.09049 0.96530 0.99971 1.16935 0.80062 0.81427 0.82833 1.90743 1.47515 1.79659 1.26731 1.45942 1.47752 1.10491 1.31594 1.21753 0.94645 0.87366 0.96586 1.20701 0.98140 0.93258 0.82662 0.92466 1.22200 0.99536 0.99148 1.00546 1.42831 1.61429 1.31923 1.03171 1.19011 1.23689 1.05127 0.87325 0.91825 1.25320 1.02464 1.01061 0.95939 1.69856 1.51954 1.40475 1.00957 0.85578 0.79418 0.80070 0.77696 1.21271 1.22392 1.18132 1.74732 1.05647 1.19446 1.11035 1.81910 1.21213 0.91016 1.13231 0.93043 0.87031 0.92426 0.87051 0.83531 0.73928 0.75310 0.88845 0.91363 0.92838 0.94065 0.90220 0.80427 0.93508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 10.12 71.98 0.73 -0.60 16 2 C 0.11 0.78 7.26 86.38 0.63 1.41 16 3 N -0.35 -6.56 3.69 -347.10 -1.28 -7.84 16 4 C 0.11 2.23 11.27 83.85 0.95 3.18 16 5 C -0.13 -3.87 6.99 40.82 0.29 -3.59 16 6 C 0.60 19.60 7.82 86.69 0.68 20.28 16 7 O -0.57 -19.32 16.86 -4.01 -0.07 -19.39 16 8 N -0.71 -24.04 5.38 -466.29 -2.51 -26.55 16 9 C 0.12 3.76 5.23 86.38 0.45 4.21 16 10 C 0.16 5.78 3.05 45.00 0.14 5.92 16 11 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16 12 C -0.15 -4.91 9.49 71.98 0.68 -4.23 16 13 N -0.75 -34.25 4.36 -322.95 -1.41 -35.66 16 14 C -0.22 -12.39 10.41 84.03 0.87 -11.52 16 15 H 0.06 3.89 8.06 -2.91 -0.02 3.86 16 16 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 17 N -0.98 -63.54 13.97 21.65 0.30 -63.24 16 18 Si 0.94 47.20 27.74 68.60 1.90 49.10 16 19 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 20 H -0.30 -15.02 7.11 99.48 0.71 -14.32 16 21 H -0.26 -11.75 6.52 99.48 0.65 -11.10 16 22 N -0.24 -8.03 12.04 -49.99 -0.60 -8.63 16 23 N -0.09 -2.75 13.65 37.02 0.51 -2.24 16 24 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 26 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.15 -0.08 8.08 -2.39 -0.02 -0.10 16 29 H 0.24 2.52 8.06 -2.91 -0.02 2.49 16 30 H 0.41 15.42 7.82 -92.71 -0.73 14.70 16 31 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.36 16.53 5.66 -92.71 -0.52 16.00 16 37 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -77.93 322.92 2.50 -75.43 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: -0.22 Total: 26.83 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: 5.88 Total: 12.19 kcal Atomic # 7 Polarization: -139.16 SS G_CDS: -5.00 Total: -144.16 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.07 Total: -19.39 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 1.90 Total: 49.10 kcal Total: -77.93 2.50 -75.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567065155.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.729 kcal (2) G-P(sol) polarization free energy of solvation -77.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds