Wall clock time and date at job start Mon Mar 30 2020 00:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.47264 * 2 1 4 4 C 1.34810 * 126.59499 * 125.02694 * 3 2 1 5 5 C 1.36596 * 106.84096 * 180.02562 * 4 3 2 6 6 C 1.47529 * 125.77198 * 179.97438 * 5 4 3 7 7 O 1.21599 * 119.99636 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00026 * 179.97438 * 6 5 4 9 9 C 1.46494 * 119.99910 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.47269 * 179.97438 * 9 8 6 11 11 H 1.09002 * 109.46958 * 294.99741 * 10 9 8 12 12 C 1.53002 * 109.47095 * 174.99972 * 10 9 8 13 13 N 1.46495 * 109.46954 * 54.99781 * 10 9 8 14 14 C 1.36938 * 119.99882 * 205.00196 * 13 10 9 15 15 H 1.07996 * 120.00387 * 0.02562 * 14 13 10 16 16 C 1.38816 * 120.00171 * 179.97438 * 14 13 10 17 17 N 1.31624 * 119.99762 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00261 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46794 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46998 * 120.00073 * 18 16 14 21 21 H 1.48499 * 109.47070 * 240.00175 * 18 16 14 22 22 N 1.34394 * 108.45958 * 359.97438 * 5 4 3 23 23 N 1.28764 * 109.52320 * 0.02562 * 22 5 4 24 24 H 1.09002 * 109.46940 * 299.99803 * 1 2 3 25 25 H 1.08995 * 109.47319 * 59.99551 * 1 2 3 26 26 H 1.08995 * 109.47601 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46940 * 240.00197 * 2 1 3 28 28 H 1.08995 * 109.47596 * 119.99975 * 2 1 3 29 29 H 1.08002 * 126.58412 * 359.96472 * 4 3 2 30 30 H 0.97003 * 119.99724 * 359.97438 * 8 6 5 31 31 H 1.09000 * 109.47176 * 299.99635 * 9 8 6 32 32 H 1.09003 * 109.47877 * 59.99370 * 9 8 6 33 33 H 1.09002 * 109.47029 * 299.99725 * 12 10 9 34 34 H 1.08991 * 109.47453 * 59.99690 * 12 10 9 35 35 H 1.09005 * 109.46485 * 179.97438 * 12 10 9 36 36 H 0.97004 * 120.00308 * 24.99914 * 13 10 9 37 37 H 0.96998 * 120.00177 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8719 1.9318 0.8863 5 6 3.0502 3.2324 0.5086 6 6 3.9069 4.2194 1.1928 7 8 4.5308 3.8982 2.1859 8 7 3.9981 5.4772 0.7173 9 6 4.8492 6.4572 1.3964 10 6 4.7749 7.7955 0.6587 11 1 5.2014 7.6850 -0.3383 12 6 5.5633 8.8511 1.4365 13 7 3.3756 8.2147 0.5475 14 6 2.9910 9.0561 -0.4621 15 1 3.7192 9.4104 -1.1766 16 6 1.6650 9.4529 -0.5678 17 7 0.7772 9.0199 0.3021 18 14 1.1406 10.6013 -1.9446 19 1 2.3190 10.9400 -2.7825 20 1 0.1135 9.9324 -2.7830 21 1 0.5724 11.8440 -1.3632 22 7 2.3132 3.4608 -0.5918 23 7 1.6876 2.3847 -0.9217 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.3268 1.4395 1.7332 30 1 3.5006 5.7333 -0.0751 31 1 4.5054 6.5879 2.4224 32 1 5.8798 6.1021 1.4012 33 1 5.1368 8.9617 2.4335 34 1 6.6043 8.5393 1.5193 35 1 5.5106 9.8045 0.9106 36 1 2.7214 7.8961 1.1890 37 1 -0.1493 9.2975 0.2285 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567065156.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:13 Heat of formation + Delta-G solvation = 65.791532 kcal Electronic energy + Delta-G solvation = -19927.543167 eV Core-core repulsion = 16742.444830 eV Total energy + Delta-G solvation = -3185.098337 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.13307 -39.02172 -36.23443 -35.54126 -33.46097 -31.81599 -31.38896 -30.30714 -28.63158 -26.05390 -24.73321 -23.70967 -22.84144 -21.79633 -20.11257 -19.89302 -17.97728 -17.21220 -16.24053 -16.15638 -15.72992 -15.11819 -14.78723 -14.61732 -14.22108 -13.90159 -13.62958 -13.11945 -12.91985 -12.67536 -12.26068 -12.15814 -12.03824 -11.90806 -11.77520 -11.32658 -11.09583 -10.82081 -10.69286 -10.39659 -10.28122 -9.94717 -9.80053 -9.64720 -9.24699 -8.91325 -8.54743 -6.95997 -5.73142 -3.03181 1.16244 1.89679 1.97955 3.46751 3.52120 3.53372 3.54796 3.60875 4.12147 4.29758 4.47108 4.62230 4.69921 4.80990 5.03446 5.14536 5.18329 5.44619 5.51590 5.55427 5.64737 5.70910 5.90046 6.00743 6.13681 6.24124 6.32108 6.37367 6.61867 6.80125 6.88325 7.09255 7.74315 7.86983 8.14601 8.43981 8.56642 9.56112 10.10909 10.46251 11.49026 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017436 B = 0.004865 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.494067 B = 5754.429309 C = 7062.418892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.120 3.880 3 N -0.366 5.366 4 C 0.086 3.914 5 C -0.095 4.095 6 C 0.599 3.401 7 O -0.556 6.556 8 N -0.694 5.694 9 C 0.115 3.885 10 C 0.159 3.841 11 H 0.054 0.946 12 C -0.162 4.162 13 N -0.723 5.723 14 C -0.241 4.241 15 H 0.071 0.929 16 C -0.010 4.010 17 N -0.929 5.929 18 Si 0.905 3.095 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.293 1.293 22 N -0.193 5.193 23 N -0.065 5.065 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.203 0.797 30 H 0.419 0.581 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.039 0.961 35 H 0.058 0.942 36 H 0.385 0.615 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.967 -18.799 1.390 19.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.001 4.001 3 N -0.152 5.152 4 C -0.070 4.070 5 C -0.235 4.235 6 C 0.383 3.617 7 O -0.435 6.435 8 N -0.344 5.344 9 C -0.010 4.010 10 C 0.048 3.952 11 H 0.072 0.928 12 C -0.222 4.222 13 N -0.366 5.366 14 C -0.372 4.372 15 H 0.089 0.911 16 C -0.206 4.206 17 N -0.577 5.577 18 Si 0.736 3.264 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.220 1.220 22 N -0.066 5.066 23 N -0.046 5.046 24 H 0.084 0.916 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.115 0.885 28 H 0.121 0.879 29 H 0.219 0.781 30 H 0.257 0.743 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.219 0.781 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.567 -18.586 0.670 18.937 hybrid contribution -0.390 0.314 0.054 0.504 sum 3.177 -18.272 0.724 18.560 Atomic orbital electron populations 1.22090 0.92806 1.03489 1.04279 1.21980 0.96864 0.76455 1.04840 1.50630 1.31880 1.12268 1.20418 1.23322 0.93527 0.94184 0.96007 1.21576 1.07665 0.94980 0.99238 1.16762 0.80246 0.81628 0.83068 1.90758 1.47048 1.79712 1.26003 1.45815 1.47307 1.09350 1.31963 1.21759 0.93722 0.88628 0.96855 1.20515 0.87959 0.89917 0.96765 0.92789 1.22361 0.98095 1.00812 1.00979 1.42470 1.02904 1.56703 1.34503 1.19255 0.92871 1.20360 1.04760 0.91057 1.24733 0.96079 1.00868 0.98915 1.69677 1.02203 1.48478 1.37339 0.86149 0.78295 0.80346 0.81566 1.20566 1.21866 1.21998 1.74764 1.04129 1.17592 1.10159 1.82005 1.20464 0.90274 1.11839 0.91620 0.90605 0.90051 0.88513 0.87874 0.78068 0.74299 0.91561 0.91573 0.93193 0.94196 0.92305 0.78057 0.93580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.03 10.12 37.15 0.38 -0.66 16 2 C 0.12 0.72 7.26 -4.04 -0.03 0.69 16 3 N -0.37 -4.12 3.69 -61.06 -0.23 -4.34 16 4 C 0.09 1.04 11.27 -16.84 -0.19 0.85 16 5 C -0.10 -1.54 6.99 -83.55 -0.58 -2.13 16 6 C 0.60 10.79 7.82 -12.47 -0.10 10.69 16 7 O -0.56 -10.69 16.86 5.28 0.09 -10.60 16 8 N -0.69 -12.87 5.38 -61.35 -0.33 -13.20 16 9 C 0.11 2.04 5.23 -4.04 -0.02 2.02 16 10 C 0.16 3.10 3.05 -67.93 -0.21 2.89 16 11 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 12 C -0.16 -2.86 9.49 37.16 0.35 -2.50 16 13 N -0.72 -17.72 4.56 -53.42 -0.24 -17.96 16 14 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 15 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 16 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 17 N -0.93 -28.14 13.06 55.49 0.72 -27.42 16 18 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 N -0.19 -3.43 12.04 32.85 0.40 -3.03 16 23 N -0.07 -1.02 13.65 60.35 0.82 -0.19 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.10 0.31 8.08 -51.93 -0.42 -0.11 16 29 H 0.20 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.42 8.38 7.82 -40.82 -0.32 8.06 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.39 10.25 7.80 -40.82 -0.32 9.93 16 37 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 326.04 15.07 4.91 4.91 Total: -1.00 -33.76 326.04 -4.77 -38.53 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -5.25 Total: 11.07 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -0.65 Total: 4.74 kcal Atomic # 7 Polarization: -67.29 SS G_CDS: 1.14 Total: -66.15 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.76 -4.77 -38.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567065156.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.323 kcal (2) G-P(sol) polarization free energy of solvation -33.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds