Wall clock time and date at job start Mon Mar 30 2020 00:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.47264 * 2 1 4 4 C 1.34810 * 126.59499 * 125.02694 * 3 2 1 5 5 C 1.36596 * 106.84096 * 180.02562 * 4 3 2 6 6 C 1.47529 * 125.77198 * 179.97438 * 5 4 3 7 7 O 1.21599 * 119.99636 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00026 * 179.97438 * 6 5 4 9 9 C 1.46494 * 119.99910 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.47269 * 179.97438 * 9 8 6 11 11 H 1.09002 * 109.46958 * 294.99741 * 10 9 8 12 12 C 1.53002 * 109.47095 * 174.99972 * 10 9 8 13 13 N 1.46495 * 109.46954 * 54.99781 * 10 9 8 14 14 C 1.36938 * 119.99882 * 205.00196 * 13 10 9 15 15 H 1.07996 * 120.00387 * 0.02562 * 14 13 10 16 16 C 1.38816 * 120.00171 * 179.97438 * 14 13 10 17 17 N 1.31624 * 119.99762 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00261 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46794 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46998 * 120.00073 * 18 16 14 21 21 H 1.48499 * 109.47070 * 240.00175 * 18 16 14 22 22 N 1.34394 * 108.45958 * 359.97438 * 5 4 3 23 23 N 1.28764 * 109.52320 * 0.02562 * 22 5 4 24 24 H 1.09002 * 109.46940 * 299.99803 * 1 2 3 25 25 H 1.08995 * 109.47319 * 59.99551 * 1 2 3 26 26 H 1.08995 * 109.47601 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46940 * 240.00197 * 2 1 3 28 28 H 1.08995 * 109.47596 * 119.99975 * 2 1 3 29 29 H 1.08002 * 126.58412 * 359.96472 * 4 3 2 30 30 H 0.97003 * 119.99724 * 359.97438 * 8 6 5 31 31 H 1.09000 * 109.47176 * 299.99635 * 9 8 6 32 32 H 1.09003 * 109.47877 * 59.99370 * 9 8 6 33 33 H 1.09002 * 109.47029 * 299.99725 * 12 10 9 34 34 H 1.08991 * 109.47453 * 59.99690 * 12 10 9 35 35 H 1.09005 * 109.46485 * 179.97438 * 12 10 9 36 36 H 0.97004 * 120.00308 * 24.99914 * 13 10 9 37 37 H 0.96998 * 120.00177 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8719 1.9318 0.8863 5 6 3.0502 3.2324 0.5086 6 6 3.9069 4.2194 1.1928 7 8 4.5308 3.8982 2.1859 8 7 3.9981 5.4772 0.7173 9 6 4.8492 6.4572 1.3964 10 6 4.7749 7.7955 0.6587 11 1 5.2014 7.6850 -0.3383 12 6 5.5633 8.8511 1.4365 13 7 3.3756 8.2147 0.5475 14 6 2.9910 9.0561 -0.4621 15 1 3.7192 9.4104 -1.1766 16 6 1.6650 9.4529 -0.5678 17 7 0.7772 9.0199 0.3021 18 14 1.1406 10.6013 -1.9446 19 1 2.3190 10.9400 -2.7825 20 1 0.1135 9.9324 -2.7830 21 1 0.5724 11.8440 -1.3632 22 7 2.3132 3.4608 -0.5918 23 7 1.6876 2.3847 -0.9217 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.3268 1.4395 1.7332 30 1 3.5006 5.7333 -0.0751 31 1 4.5054 6.5879 2.4224 32 1 5.8798 6.1021 1.4012 33 1 5.1368 8.9617 2.4335 34 1 6.6043 8.5393 1.5193 35 1 5.5106 9.8045 0.9106 36 1 2.7214 7.8961 1.1890 37 1 -0.1493 9.2975 0.2285 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567065156.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:12 Heat of formation + Delta-G solvation = 39.670828 kcal Electronic energy + Delta-G solvation = -19928.675845 eV Core-core repulsion = 16742.444830 eV Total energy + Delta-G solvation = -3186.231016 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.19905 -40.42236 -37.87915 -36.35123 -35.16613 -33.61102 -32.32578 -31.35238 -30.46008 -27.41419 -25.72018 -25.49779 -24.12118 -22.70384 -21.68542 -21.14494 -19.44267 -18.86067 -17.35978 -17.13167 -17.12370 -16.77108 -16.08889 -15.67629 -15.51565 -15.42725 -15.01879 -14.71511 -13.87031 -13.79799 -13.64210 -13.38876 -13.31380 -13.06047 -13.04600 -12.80550 -12.54613 -12.47207 -12.12608 -12.01437 -11.69281 -11.63090 -11.30476 -11.22240 -10.95653 -10.39510 -9.95463 -9.00249 -7.90099 -5.18717 0.18379 0.64440 1.17611 1.49016 1.50203 1.59357 2.20931 2.30122 2.59106 3.23833 3.43161 3.46577 3.84266 3.92225 3.98011 4.00458 4.02314 4.29912 4.35869 4.42995 4.61932 4.67332 4.75275 4.77387 4.88502 4.94773 5.09777 5.23493 5.28837 5.40467 5.53273 5.57778 5.61542 6.30847 6.48334 6.93579 7.15989 7.37901 8.11144 8.34672 9.33265 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017436 B = 0.004865 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.494067 B = 5754.429309 C = 7062.418892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.107 3.893 3 N -0.349 5.349 4 C 0.113 3.887 5 C -0.130 4.130 6 C 0.600 3.400 7 O -0.571 6.571 8 N -0.702 5.702 9 C 0.123 3.877 10 C 0.156 3.844 11 H 0.056 0.944 12 C -0.153 4.153 13 N -0.733 5.733 14 C -0.233 4.233 15 H 0.079 0.921 16 C -0.073 4.073 17 N -0.968 5.968 18 Si 0.967 3.033 19 H -0.264 1.264 20 H -0.299 1.299 21 H -0.296 1.296 22 N -0.233 5.233 23 N -0.093 5.093 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.113 0.887 27 H 0.116 0.884 28 H 0.146 0.854 29 H 0.244 0.756 30 H 0.411 0.589 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.044 0.956 36 H 0.372 0.628 37 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.258 -20.663 1.577 21.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.011 4.011 3 N -0.134 5.134 4 C -0.046 4.046 5 C -0.270 4.270 6 C 0.385 3.615 7 O -0.452 6.452 8 N -0.351 5.351 9 C -0.001 4.001 10 C 0.048 3.952 11 H 0.074 0.926 12 C -0.213 4.213 13 N -0.374 5.374 14 C -0.364 4.364 15 H 0.096 0.904 16 C -0.265 4.265 17 N -0.619 5.619 18 Si 0.797 3.203 19 H -0.189 1.189 20 H -0.226 1.226 21 H -0.224 1.224 22 N -0.106 5.106 23 N -0.074 5.074 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.131 0.869 27 H 0.134 0.866 28 H 0.164 0.836 29 H 0.260 0.740 30 H 0.247 0.753 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.063 0.937 36 H 0.204 0.796 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.901 -20.473 0.831 21.068 hybrid contribution -0.735 0.720 0.032 1.029 sum 4.167 -19.753 0.863 20.206 Atomic orbital electron populations 1.22092 0.92980 1.04975 1.02422 1.22598 0.96749 0.73873 1.07918 1.51022 1.30463 1.13201 1.18734 1.23875 0.92040 0.92656 0.96010 1.21593 1.08923 0.96431 1.00053 1.16978 0.80074 0.81583 0.82817 1.90730 1.47874 1.79968 1.26589 1.45881 1.47521 1.09934 1.31768 1.21699 0.94866 0.87658 0.95926 1.20725 0.85560 0.91339 0.97570 0.92554 1.22215 0.99904 0.99262 0.99919 1.42618 1.04803 1.56394 1.33590 1.19625 0.92872 1.19222 1.04724 0.90353 1.25474 0.96451 1.03171 1.01414 1.69833 1.02102 1.50527 1.39469 0.85159 0.77966 0.78123 0.79037 1.18866 1.22618 1.22387 1.74729 1.05328 1.19119 1.11452 1.81891 1.21101 0.90944 1.13440 0.92875 0.93048 0.86872 0.86591 0.83619 0.73997 0.75328 0.92334 0.89188 0.93677 0.90476 0.93702 0.79628 0.94341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 10.12 71.98 0.73 -0.97 16 2 C 0.11 0.93 7.26 86.38 0.63 1.56 16 3 N -0.35 -7.16 3.69 -347.11 -1.28 -8.44 16 4 C 0.11 2.45 11.27 83.85 0.95 3.40 16 5 C -0.13 -4.17 6.99 40.82 0.29 -3.88 16 6 C 0.60 21.50 7.82 86.69 0.68 22.18 16 7 O -0.57 -21.35 16.86 -4.03 -0.07 -21.42 16 8 N -0.70 -26.24 5.38 -466.27 -2.51 -28.75 16 9 C 0.12 4.26 5.23 86.38 0.45 4.71 16 10 C 0.16 5.99 3.05 44.99 0.14 6.13 16 11 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16 12 C -0.15 -5.15 9.49 71.98 0.68 -4.46 16 13 N -0.73 -36.30 4.56 -322.94 -1.47 -37.77 16 14 C -0.23 -12.74 9.93 84.03 0.83 -11.90 16 15 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 16 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 17 N -0.97 -60.23 13.06 21.65 0.28 -59.95 16 18 Si 0.97 46.92 29.55 68.60 2.03 48.95 16 19 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 21 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 22 N -0.23 -8.48 12.04 -49.99 -0.60 -9.08 16 23 N -0.09 -2.91 13.65 37.02 0.51 -2.40 16 24 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.15 0.12 8.08 -2.39 -0.02 0.10 16 29 H 0.24 3.05 8.06 -2.91 -0.02 3.02 16 30 H 0.41 16.92 7.82 -92.71 -0.73 16.19 16 31 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.09 2.70 8.14 -2.39 -0.02 2.69 16 33 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.37 20.31 7.80 -92.71 -0.72 19.59 16 37 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -75.34 326.04 2.36 -72.98 By element: Atomic # 1 Polarization: 33.24 SS G_CDS: -0.36 Total: 32.88 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 5.84 Total: 13.01 kcal Atomic # 7 Polarization: -141.32 SS G_CDS: -5.08 Total: -146.40 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.07 Total: -21.42 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -75.34 2.36 -72.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567065156.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.651 kcal (2) G-P(sol) polarization free energy of solvation -75.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds