Wall clock time and date at job start Mon Mar 30 2020 00:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47418 * 2 1 4 4 C 1.53001 * 109.47162 * 239.99770 * 2 1 3 5 5 N 1.46499 * 109.47207 * 184.99784 * 4 2 1 6 6 C 1.36936 * 119.99995 * 180.02562 * 5 4 2 7 7 H 1.07994 * 120.00029 * 0.02562 * 6 5 4 8 8 C 1.38818 * 119.99840 * 180.02562 * 6 5 4 9 9 N 1.31615 * 119.99921 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00026 * 0.02562 * 8 6 5 11 11 H 1.48493 * 109.47116 * 90.00110 * 10 8 6 12 12 H 1.48502 * 109.46848 * 210.00189 * 10 8 6 13 13 H 1.48500 * 109.47273 * 329.99903 * 10 8 6 14 14 N 1.46502 * 109.46913 * 120.00201 * 2 1 3 15 15 C 1.46497 * 120.00163 * 60.00264 * 14 2 1 16 16 C 1.34772 * 119.99840 * 239.99791 * 14 2 1 17 17 O 1.21280 * 120.00185 * 0.02562 * 16 14 2 18 18 C 1.50702 * 120.00188 * 180.02562 * 16 14 2 19 19 C 1.50696 * 109.47272 * 180.02562 * 18 16 14 20 20 N 1.33251 * 125.52599 * 90.00181 * 19 18 16 21 21 C 1.30825 * 109.82850 * 179.97438 * 20 19 18 22 22 N 1.34434 * 108.08133 * 359.97438 * 21 20 19 23 23 H 0.96991 * 126.82624 * 179.73840 * 22 21 20 24 24 N 1.30709 * 125.53091 * 269.99942 * 19 18 16 25 25 H 1.08999 * 109.47037 * 60.00193 * 1 2 3 26 26 H 1.09007 * 109.46902 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47246 * 299.99848 * 1 2 3 28 28 H 1.08998 * 109.47577 * 305.00222 * 4 2 1 29 29 H 1.09006 * 109.46988 * 65.00540 * 4 2 1 30 30 H 0.97003 * 120.00108 * 0.02562 * 5 4 2 31 31 H 0.96995 * 120.00336 * 179.97438 * 9 8 6 32 32 H 1.09010 * 109.47101 * 269.99513 * 15 14 2 33 33 H 1.08999 * 109.47792 * 29.99449 * 15 14 2 34 34 H 1.09002 * 109.47563 * 150.00053 * 15 14 2 35 35 H 1.08999 * 109.46924 * 59.99927 * 18 16 14 36 36 H 1.09001 * 109.47302 * 300.00405 * 18 16 14 37 37 H 1.08002 * 125.96446 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1906 6 6 4.1839 -1.4379 -2.2072 7 1 3.6469 -1.8424 -3.0524 8 6 5.5673 -1.5380 -2.1513 9 7 6.2246 -2.1253 -3.1287 10 14 6.4960 -0.8390 -0.6891 11 1 6.6266 -1.8826 0.3592 12 1 7.8471 -0.4021 -1.1237 13 1 5.7527 0.3236 -0.1403 14 7 2.0183 -0.6907 1.1962 15 6 1.6644 -2.0932 1.4280 16 6 2.7932 -0.0357 2.0833 17 8 3.0858 1.1255 1.8917 18 6 3.2960 -0.7463 3.3135 19 6 4.1326 0.2011 4.1342 20 7 3.6768 1.0001 5.0982 21 6 4.6651 1.6896 5.6074 22 7 5.7933 1.3373 4.9668 23 1 6.6848 1.6844 5.1260 24 7 5.4230 0.3723 4.0159 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6054 -1.7198 -1.2952 29 1 1.7517 -0.1583 -2.1370 30 1 3.9824 -0.4628 -0.4316 31 1 7.1913 -2.1949 -3.0899 32 1 0.7375 -2.1445 1.9994 33 1 1.5295 -2.5970 0.4708 34 1 2.4629 -2.5820 1.9863 35 1 3.9017 -1.6024 3.0165 36 1 2.4484 -1.0893 3.9069 37 1 4.5884 2.4147 6.4042 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568309283.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:54 Heat of formation + Delta-G solvation = 73.200656 kcal Electronic energy + Delta-G solvation = -20878.126472 eV Core-core repulsion = 17693.349419 eV Total energy + Delta-G solvation = -3184.777053 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.15756 -39.77278 -36.52584 -34.13952 -33.38412 -32.10154 -31.55748 -30.52356 -28.74802 -26.70342 -25.87740 -23.02826 -22.40764 -21.62102 -20.18837 -18.85554 -18.33834 -17.50885 -17.20348 -15.95398 -15.72200 -15.14695 -14.94104 -14.53288 -14.04990 -13.83302 -13.17911 -13.11285 -12.83170 -12.54778 -12.34175 -12.20333 -12.17651 -11.98094 -11.95253 -11.69451 -10.88811 -10.74415 -10.52005 -10.22852 -10.11719 -10.04189 -9.87772 -9.54008 -9.43967 -8.84002 -8.37656 -7.16860 -5.72210 -3.06692 1.56018 2.57308 2.72030 2.86054 3.31851 3.45740 3.52971 3.60636 3.99807 4.55535 4.67056 4.71044 4.82584 5.15122 5.25581 5.35262 5.36390 5.44516 5.52530 5.59609 5.65946 5.85629 5.87394 6.00437 6.08215 6.14049 6.27014 6.30193 6.44909 6.65341 6.89276 6.94336 7.59551 8.00273 8.03940 8.39315 8.47331 9.27278 10.00545 10.20829 11.45897 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.015543 B = 0.007612 C = 0.005545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.059821 B = 3677.744400 C = 5048.736931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.123 3.877 3 H 0.099 0.901 4 C 0.148 3.852 5 N -0.752 5.752 6 C -0.242 4.242 7 H 0.090 0.910 8 C 0.007 3.993 9 N -0.935 5.935 10 Si 0.877 3.123 11 H -0.283 1.283 12 H -0.292 1.292 13 H -0.273 1.273 14 N -0.599 5.599 15 C 0.076 3.924 16 C 0.522 3.478 17 O -0.533 6.533 18 C -0.050 4.050 19 C 0.249 3.751 20 N -0.535 5.535 21 C 0.258 3.742 22 N -0.484 5.484 23 H 0.441 0.559 24 N -0.298 5.298 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.030 0.970 29 H 0.037 0.963 30 H 0.363 0.637 31 H 0.259 0.741 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.629 3.826 18.561 20.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.019 3.981 3 H 0.117 0.883 4 C 0.020 3.980 5 N -0.398 5.398 6 C -0.372 4.372 7 H 0.108 0.892 8 C -0.189 4.189 9 N -0.583 5.583 10 Si 0.707 3.293 11 H -0.210 1.210 12 H -0.218 1.218 13 H -0.199 1.199 14 N -0.332 5.332 15 C -0.068 4.068 16 C 0.308 3.692 17 O -0.409 6.409 18 C -0.093 4.093 19 C -0.034 4.034 20 N -0.263 5.263 21 C -0.041 4.041 22 N -0.202 5.202 23 H 0.286 0.714 24 N -0.127 5.127 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.196 0.804 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -8.379 3.933 17.813 20.074 hybrid contribution 1.494 0.838 1.244 2.117 sum -6.885 4.771 19.057 20.816 Atomic orbital electron populations 1.22031 0.94705 1.02260 1.02179 1.21458 0.93735 0.98475 0.84387 0.88258 1.20989 0.85756 0.97405 0.93857 1.42668 1.01275 1.71175 1.24681 1.19042 0.89873 1.29106 0.99198 0.89213 1.24620 0.96166 1.00552 0.97538 1.69700 1.07260 1.48757 1.32553 0.86651 0.79774 0.79655 0.83259 1.20966 1.21831 1.19894 1.47693 1.50611 1.12477 1.22464 1.21814 1.00152 0.81576 1.03208 1.20103 0.78314 0.86956 0.83848 1.90714 1.56956 1.16941 1.76277 1.19971 0.99458 0.96273 0.93561 1.23336 0.89164 0.96604 0.94284 1.70327 1.31607 1.11286 1.13101 1.26023 0.81895 0.98486 0.97678 1.48093 1.11503 1.32534 1.28093 0.71358 1.78105 1.15196 1.09098 1.10285 0.91304 0.92180 0.92547 0.95201 0.94568 0.80351 0.93149 0.92725 0.89849 0.91201 0.86361 0.86062 0.76177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.19 37.16 0.34 -1.54 16 2 C 0.12 2.03 2.80 -67.93 -0.19 1.84 16 3 H 0.10 1.90 6.90 -51.93 -0.36 1.55 16 4 C 0.15 2.90 5.50 -4.04 -0.02 2.88 16 5 N -0.75 -18.82 5.24 -59.91 -0.31 -19.13 16 6 C -0.24 -7.09 10.47 -15.06 -0.16 -7.25 16 7 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 8 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 9 N -0.93 -30.21 13.97 55.49 0.78 -29.44 16 10 Si 0.88 24.03 27.74 -169.99 -4.71 19.32 16 11 H -0.28 -7.59 7.11 56.52 0.40 -7.19 16 12 H -0.29 -8.04 7.11 56.52 0.40 -7.64 16 13 H -0.27 -7.63 6.52 56.52 0.37 -7.26 16 14 N -0.60 -9.51 2.24 -173.93 -0.39 -9.90 16 15 C 0.08 0.91 9.30 59.85 0.56 1.46 16 16 C 0.52 9.29 7.37 -10.99 -0.08 9.21 16 17 O -0.53 -11.70 15.36 5.56 0.09 -11.61 16 18 C -0.05 -0.73 4.88 -29.04 -0.14 -0.87 16 19 C 0.25 4.06 6.63 -156.85 -1.04 3.02 16 20 N -0.54 -7.79 11.19 -11.98 -0.13 -7.92 16 21 C 0.26 2.69 13.13 -90.65 -1.19 1.50 16 22 N -0.48 -5.58 7.45 29.53 0.22 -5.36 16 23 H 0.44 3.28 8.96 -182.34 -1.63 1.65 16 24 N -0.30 -5.03 12.80 32.42 0.41 -4.62 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.65 7.67 -51.92 -0.40 0.25 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.03 0.56 6.88 -51.93 -0.36 0.20 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.36 9.43 4.93 -40.82 -0.20 9.23 16 31 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 32 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 33 H 0.08 1.06 6.53 -51.93 -0.34 0.73 16 34 H 0.07 0.76 6.44 -51.93 -0.33 0.42 16 35 H 0.12 1.59 7.40 -51.93 -0.38 1.20 16 36 H 0.12 1.32 8.11 -51.93 -0.42 0.90 16 37 H 0.22 0.99 8.06 -52.49 -0.42 0.56 16 LS Contribution 312.30 15.07 4.71 4.71 Total: -1.00 -40.52 312.30 -7.51 -48.03 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.13 Total: 5.55 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: -2.02 Total: 10.37 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: 0.57 Total: -76.37 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 14 Polarization: 24.03 SS G_CDS: -4.71 Total: 19.32 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -40.52 -7.51 -48.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568309283.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.230 kcal (2) G-P(sol) polarization free energy of solvation -40.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds