Wall clock time and date at job start Mon Mar 30 2020 00:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47418 * 2 1 4 4 C 1.53001 * 109.47162 * 239.99770 * 2 1 3 5 5 N 1.46499 * 109.47207 * 184.99784 * 4 2 1 6 6 C 1.36936 * 119.99995 * 180.02562 * 5 4 2 7 7 H 1.07994 * 120.00029 * 0.02562 * 6 5 4 8 8 C 1.38818 * 119.99840 * 180.02562 * 6 5 4 9 9 N 1.31615 * 119.99921 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00026 * 0.02562 * 8 6 5 11 11 H 1.48493 * 109.47116 * 90.00110 * 10 8 6 12 12 H 1.48502 * 109.46848 * 210.00189 * 10 8 6 13 13 H 1.48500 * 109.47273 * 329.99903 * 10 8 6 14 14 N 1.46502 * 109.46913 * 120.00201 * 2 1 3 15 15 C 1.46497 * 120.00163 * 60.00264 * 14 2 1 16 16 C 1.34772 * 119.99840 * 239.99791 * 14 2 1 17 17 O 1.21280 * 120.00185 * 0.02562 * 16 14 2 18 18 C 1.50702 * 120.00188 * 180.02562 * 16 14 2 19 19 C 1.50696 * 109.47272 * 180.02562 * 18 16 14 20 20 N 1.33251 * 125.52599 * 90.00181 * 19 18 16 21 21 C 1.30825 * 109.82850 * 179.97438 * 20 19 18 22 22 N 1.34434 * 108.08133 * 359.97438 * 21 20 19 23 23 H 0.96991 * 126.82624 * 179.73840 * 22 21 20 24 24 N 1.30709 * 125.53091 * 269.99942 * 19 18 16 25 25 H 1.08999 * 109.47037 * 60.00193 * 1 2 3 26 26 H 1.09007 * 109.46902 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47246 * 299.99848 * 1 2 3 28 28 H 1.08998 * 109.47577 * 305.00222 * 4 2 1 29 29 H 1.09006 * 109.46988 * 65.00540 * 4 2 1 30 30 H 0.97003 * 120.00108 * 0.02562 * 5 4 2 31 31 H 0.96995 * 120.00336 * 179.97438 * 9 8 6 32 32 H 1.09010 * 109.47101 * 269.99513 * 15 14 2 33 33 H 1.08999 * 109.47792 * 29.99449 * 15 14 2 34 34 H 1.09002 * 109.47563 * 150.00053 * 15 14 2 35 35 H 1.08999 * 109.46924 * 59.99927 * 18 16 14 36 36 H 1.09001 * 109.47302 * 300.00405 * 18 16 14 37 37 H 1.08002 * 125.96446 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1906 6 6 4.1839 -1.4379 -2.2072 7 1 3.6469 -1.8424 -3.0524 8 6 5.5673 -1.5380 -2.1513 9 7 6.2246 -2.1253 -3.1287 10 14 6.4960 -0.8390 -0.6891 11 1 6.6266 -1.8826 0.3592 12 1 7.8471 -0.4021 -1.1237 13 1 5.7527 0.3236 -0.1403 14 7 2.0183 -0.6907 1.1962 15 6 1.6644 -2.0932 1.4280 16 6 2.7932 -0.0357 2.0833 17 8 3.0858 1.1255 1.8917 18 6 3.2960 -0.7463 3.3135 19 6 4.1326 0.2011 4.1342 20 7 3.6768 1.0001 5.0982 21 6 4.6651 1.6896 5.6074 22 7 5.7933 1.3373 4.9668 23 1 6.6848 1.6844 5.1260 24 7 5.4230 0.3723 4.0159 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6054 -1.7198 -1.2952 29 1 1.7517 -0.1583 -2.1370 30 1 3.9824 -0.4628 -0.4316 31 1 7.1913 -2.1949 -3.0899 32 1 0.7375 -2.1445 1.9994 33 1 1.5295 -2.5970 0.4708 34 1 2.4629 -2.5820 1.9863 35 1 3.9017 -1.6024 3.0165 36 1 2.4484 -1.0893 3.9069 37 1 4.5884 2.4147 6.4042 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568309283.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:54 Heat of formation + Delta-G solvation = 42.489473 kcal Electronic energy + Delta-G solvation = -20879.458209 eV Core-core repulsion = 17693.349419 eV Total energy + Delta-G solvation = -3186.108790 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.12375 -41.07047 -37.99697 -35.95973 -34.53028 -33.65112 -32.77690 -32.17808 -29.82465 -27.75983 -27.59991 -24.28234 -23.84752 -23.08268 -21.40085 -20.20728 -19.52099 -19.26478 -18.44774 -17.23414 -16.89588 -16.67908 -16.21286 -16.01007 -15.67063 -15.11969 -14.86546 -14.30188 -14.23524 -14.13497 -13.75828 -13.60500 -13.27940 -13.16067 -13.03510 -12.98989 -12.87128 -12.39584 -12.30194 -11.89949 -11.79049 -11.27598 -11.13674 -11.06194 -10.98402 -10.63594 -9.62106 -9.32830 -8.09455 -5.39286 0.61452 1.25878 1.29886 1.38876 1.54747 1.66129 1.81304 2.20233 2.38381 3.10614 3.22807 3.49404 3.61844 3.71043 4.01446 4.11159 4.25192 4.28192 4.39519 4.41044 4.47829 4.79184 4.82152 4.85497 4.93504 5.06116 5.15479 5.20192 5.27687 5.32882 5.60723 5.72522 6.16073 6.23304 6.37759 7.02037 7.04460 7.12000 7.80456 7.97537 9.12143 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.015543 B = 0.007612 C = 0.005545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.059821 B = 3677.744400 C = 5048.736931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.127 3.873 3 H 0.068 0.932 4 C 0.143 3.857 5 N -0.757 5.757 6 C -0.223 4.223 7 H 0.070 0.930 8 C -0.050 4.050 9 N -0.976 5.976 10 Si 0.939 3.061 11 H -0.272 1.272 12 H -0.294 1.294 13 H -0.285 1.285 14 N -0.599 5.599 15 C 0.067 3.933 16 C 0.513 3.487 17 O -0.585 6.585 18 C -0.047 4.047 19 C 0.234 3.766 20 N -0.567 5.567 21 C 0.277 3.723 22 N -0.477 5.477 23 H 0.457 0.543 24 N -0.354 5.354 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.049 0.951 29 H 0.036 0.964 30 H 0.359 0.641 31 H 0.258 0.742 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.125 0.875 36 H 0.157 0.843 37 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.081 3.832 20.918 23.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.024 3.976 3 H 0.086 0.914 4 C 0.017 3.983 5 N -0.403 5.403 6 C -0.354 4.354 7 H 0.088 0.912 8 C -0.243 4.243 9 N -0.627 5.627 10 Si 0.769 3.231 11 H -0.198 1.198 12 H -0.221 1.221 13 H -0.212 1.212 14 N -0.331 5.331 15 C -0.075 4.075 16 C 0.301 3.699 17 O -0.466 6.466 18 C -0.089 4.089 19 C -0.049 4.049 20 N -0.296 5.296 21 C -0.021 4.021 22 N -0.197 5.197 23 H 0.305 0.695 24 N -0.184 5.184 25 H 0.097 0.903 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.191 0.809 31 H 0.067 0.933 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.143 0.857 36 H 0.174 0.826 37 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -9.867 3.917 20.194 22.815 hybrid contribution 1.861 0.883 0.509 2.122 sum -8.005 4.801 20.704 22.711 Atomic orbital electron populations 1.21944 0.90850 1.03963 1.03124 1.21320 0.96505 0.96339 0.83470 0.91418 1.21247 0.82684 0.98750 0.95652 1.42764 1.03534 1.70569 1.23387 1.19097 0.89945 1.27309 0.99083 0.91230 1.25204 0.97203 1.01995 0.99863 1.69821 1.07425 1.51003 1.34485 0.85661 0.78125 0.78629 0.80661 1.19807 1.22106 1.21175 1.47858 1.49817 1.13866 1.21548 1.22122 1.02515 0.79155 1.03667 1.20711 0.77820 0.86580 0.84834 1.90678 1.58954 1.19303 1.77632 1.20067 1.00614 0.95747 0.92462 1.23635 0.89248 0.97191 0.94852 1.70319 1.33274 1.12343 1.13704 1.27113 0.80448 0.97421 0.97147 1.48010 1.12818 1.31647 1.27198 0.69497 1.77962 1.16062 1.11607 1.12816 0.90304 0.90024 0.91721 0.93288 0.94621 0.80866 0.93304 0.88808 0.90536 0.90029 0.85719 0.82562 0.70603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.19 71.98 0.66 -2.40 16 2 C 0.13 4.07 2.80 44.99 0.13 4.20 16 3 H 0.07 2.62 6.90 -2.39 -0.02 2.60 16 4 C 0.14 5.46 5.50 86.38 0.48 5.94 16 5 N -0.76 -37.72 5.24 -343.45 -1.80 -39.52 16 6 C -0.22 -13.14 10.47 84.04 0.88 -12.26 16 7 H 0.07 4.33 8.06 -2.91 -0.02 4.31 16 8 C -0.05 -3.12 5.50 84.86 0.47 -2.65 16 9 N -0.98 -64.05 13.97 21.65 0.30 -63.74 16 10 Si 0.94 50.87 27.74 68.60 1.90 52.77 16 11 H -0.27 -14.10 7.11 99.48 0.71 -13.40 16 12 H -0.29 -15.91 7.11 99.48 0.71 -15.21 16 13 H -0.29 -15.88 6.52 99.48 0.65 -15.23 16 14 N -0.60 -17.97 2.24 -822.59 -1.85 -19.82 16 15 C 0.07 1.40 9.30 127.77 1.19 2.59 16 16 C 0.51 17.84 7.37 87.66 0.65 18.49 16 17 O -0.59 -26.01 15.36 -3.03 -0.05 -26.06 16 18 C -0.05 -1.29 4.88 29.10 0.14 -1.15 16 19 C 0.23 7.39 6.63 138.63 0.92 8.31 16 20 N -0.57 -15.55 11.19 -191.80 -2.15 -17.70 16 21 C 0.28 5.04 13.13 180.36 2.37 7.41 16 22 N -0.48 -10.25 7.45 -60.49 -0.45 -10.70 16 23 H 0.46 6.04 8.96 -213.11 -1.91 4.13 16 24 N -0.35 -11.77 12.80 -51.33 -0.66 -12.43 16 25 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.08 1.44 7.67 -2.38 -0.02 1.43 16 27 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.05 1.72 6.88 -2.39 -0.02 1.71 16 29 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.36 18.61 4.93 -92.71 -0.46 18.15 16 31 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 32 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.08 1.73 6.53 -2.39 -0.02 1.71 16 34 H 0.08 1.53 6.44 -2.39 -0.02 1.51 16 35 H 0.12 3.18 7.40 -2.39 -0.02 3.16 16 36 H 0.16 2.98 8.11 -2.39 -0.02 2.96 16 37 H 0.28 1.24 8.06 -2.91 -0.02 1.22 16 Total: -1.00 -90.58 312.30 1.82 -88.76 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -1.32 Total: 19.96 kcal Atomic # 6 Polarization: 20.60 SS G_CDS: 7.87 Total: 28.47 kcal Atomic # 7 Polarization: -157.31 SS G_CDS: -6.60 Total: -163.91 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.05 Total: -26.06 kcal Atomic # 14 Polarization: 50.87 SS G_CDS: 1.90 Total: 52.77 kcal Total: -90.58 1.82 -88.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568309283.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.252 kcal (2) G-P(sol) polarization free energy of solvation -90.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds