Wall clock time and date at job start Mon Mar 30 2020 00:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 120.00157 * 2 1 4 4 C 1.52998 * 109.47339 * 270.00140 * 3 2 1 5 5 C 1.53000 * 109.46834 * 180.02562 * 4 3 2 6 6 N 1.46502 * 109.46881 * 180.02562 * 5 4 3 7 7 C 1.36942 * 119.99973 * 179.97438 * 6 5 4 8 8 H 1.07999 * 119.99855 * 359.97438 * 7 6 5 9 9 C 1.38810 * 119.99997 * 179.97438 * 7 6 5 10 10 N 1.31620 * 119.99884 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00173 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47026 * 60.00062 * 11 9 7 13 13 H 1.48497 * 109.47155 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46973 * 300.00175 * 11 9 7 15 15 C 1.34780 * 119.99536 * 180.02562 * 2 1 3 16 16 O 1.21554 * 119.99497 * 174.50882 * 15 2 1 17 17 C 1.47800 * 120.00132 * 354.77847 * 15 2 1 18 18 C 1.40917 * 127.23755 * 173.77964 * 17 15 2 19 19 N 1.31136 * 105.77776 * 180.02562 * 18 17 15 20 20 N 1.28516 * 109.05755 * 359.97438 * 19 18 17 21 21 C 1.46497 * 124.44187 * 180.02562 * 20 19 18 22 22 N 1.28591 * 111.10979 * 359.72627 * 20 19 18 23 23 H 1.08994 * 109.47490 * 265.32090 * 1 2 3 24 24 H 1.09009 * 109.46841 * 25.32058 * 1 2 3 25 25 H 1.08999 * 109.47354 * 145.31663 * 1 2 3 26 26 H 1.09003 * 109.47007 * 30.00754 * 3 2 1 27 27 H 1.09006 * 109.46806 * 149.99857 * 3 2 1 28 28 H 1.09001 * 109.47091 * 300.00064 * 4 3 2 29 29 H 1.08999 * 109.47017 * 60.00112 * 4 3 2 30 30 H 1.09001 * 109.47167 * 299.99813 * 5 4 3 31 31 H 1.08999 * 109.47394 * 60.00139 * 5 4 3 32 32 H 0.97005 * 120.00035 * 0.02562 * 6 5 4 33 33 H 0.97000 * 119.99708 * 179.97438 * 10 9 7 34 34 H 1.08002 * 127.11351 * 359.97037 * 18 17 15 35 35 H 1.08997 * 109.47624 * 90.02575 * 21 20 19 36 36 H 1.09004 * 109.46616 * 210.02768 * 21 20 19 37 37 H 1.09003 * 109.47335 * 330.02422 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 6 3.2181 3.0351 -1.4423 6 7 3.4618 3.4584 -2.8235 7 6 4.1349 4.6244 -3.0737 8 1 4.4858 5.2321 -2.2528 9 6 4.3662 5.0252 -4.3824 10 7 3.9382 4.2848 -5.3828 11 14 5.2850 6.6154 -4.7237 12 1 6.6424 6.5408 -4.1261 13 1 5.3998 6.8157 -6.1906 14 1 4.5428 7.7541 -4.1256 15 6 2.1388 -1.1673 -0.0005 16 8 3.3502 -1.1696 -0.1013 17 6 1.4044 -2.4446 0.1154 18 6 1.9349 -3.7459 0.0102 19 7 0.9202 -4.5593 0.1789 20 7 -0.1451 -3.8669 0.3719 21 6 -1.4749 -4.4382 0.5986 22 7 0.1104 -2.6069 0.3459 23 1 -0.3634 -0.0838 1.0242 24 1 -0.3633 0.9290 -0.4396 25 1 -0.3634 -0.8450 -0.5848 26 1 1.6085 2.0283 0.5140 27 1 3.1500 1.1383 0.5139 28 1 3.0416 0.9507 -1.9563 29 1 1.5001 1.8408 -1.9563 30 1 2.6295 3.7949 -0.9283 31 1 4.1706 2.9043 -0.9286 32 1 3.1457 2.9130 -3.5609 33 1 4.0995 4.5650 -6.2973 34 1 2.9641 -4.0172 -0.1726 35 1 -1.6281 -4.5895 1.6671 36 1 -2.2337 -3.7557 0.2157 37 1 -1.5525 -5.3947 0.0815 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569247812.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:10 Heat of formation + Delta-G solvation = 98.410522 kcal Electronic energy + Delta-G solvation = -19662.277607 eV Core-core repulsion = 16478.593735 eV Total energy + Delta-G solvation = -3183.683872 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.91329 -39.70170 -36.17274 -34.83773 -34.10966 -33.04082 -32.02218 -29.82534 -28.33479 -26.89638 -25.69189 -23.81476 -22.46572 -22.26805 -20.89393 -19.63216 -17.65039 -17.33668 -17.05422 -16.98078 -16.05735 -15.24407 -15.04863 -14.61641 -14.42348 -13.81917 -13.59667 -13.34912 -13.20758 -13.00269 -12.95356 -12.69465 -12.07612 -11.90719 -11.84033 -11.06933 -10.88258 -10.79162 -10.73053 -10.63423 -10.34543 -10.17338 -10.00751 -9.69601 -9.65857 -8.80266 -8.64774 -6.85238 -5.69815 -2.98400 1.08638 1.71850 1.85326 2.89432 3.16024 3.48932 3.52603 3.54199 3.64410 4.37806 4.53056 4.65213 4.67714 4.79065 4.82343 5.14250 5.27960 5.31212 5.40491 5.55386 5.62206 5.64729 5.73580 5.80847 5.99034 6.13079 6.24581 6.36154 6.45652 6.56433 6.93306 6.95237 7.27526 7.75408 7.81571 8.07742 8.49271 9.59840 10.19014 10.53591 11.53300 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.043306 B = 0.003022 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.409742 B = 9261.731138 C = 9317.960215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.600 5.600 3 C 0.121 3.879 4 C -0.140 4.140 5 C 0.157 3.843 6 N -0.734 5.734 7 C -0.238 4.238 8 H 0.070 0.930 9 C -0.016 4.016 10 N -0.935 5.935 11 Si 0.909 3.091 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 C 0.602 3.398 16 O -0.520 6.520 17 C -0.040 4.040 18 C 0.036 3.964 19 N -0.293 5.293 20 N -0.149 5.149 21 C 0.104 3.896 22 N -0.248 5.248 23 H 0.057 0.943 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.018 0.982 31 H 0.021 0.979 32 H 0.384 0.616 33 H 0.255 0.745 34 H 0.209 0.791 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.641 -17.856 14.598 26.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.332 5.332 3 C -0.001 4.001 4 C -0.179 4.179 5 C 0.028 3.972 6 N -0.378 5.378 7 C -0.370 4.370 8 H 0.088 0.912 9 C -0.212 4.212 10 N -0.584 5.584 11 Si 0.740 3.260 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.213 1.213 15 C 0.387 3.613 16 O -0.394 6.394 17 C -0.202 4.202 18 C -0.147 4.147 19 N -0.132 5.132 20 N -0.052 5.052 21 C -0.035 4.035 22 N -0.097 5.097 23 H 0.076 0.924 24 H 0.092 0.908 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.036 0.964 31 H 0.039 0.961 32 H 0.217 0.783 33 H 0.065 0.935 34 H 0.225 0.775 35 H 0.111 0.889 36 H 0.124 0.876 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.152 -18.222 14.785 27.403 hybrid contribution 1.017 0.986 -0.669 1.567 sum -13.135 -17.236 14.116 25.863 Atomic orbital electron populations 1.21949 0.78696 1.03288 1.02135 1.47718 1.07602 1.05795 1.72113 1.21576 0.97395 0.82907 0.98256 1.22072 1.01194 0.99076 0.95566 1.20542 0.96055 0.91849 0.88707 1.42355 1.68310 1.25972 1.01137 1.19210 1.27813 0.98152 0.91784 0.91189 1.24755 1.01783 0.99070 0.95572 1.69661 1.51597 1.38975 0.98158 0.86242 0.79723 0.83270 0.76813 1.21245 1.21713 1.21303 1.16725 0.86045 0.81332 0.77235 1.90849 1.12691 1.86216 1.49621 1.23120 0.89988 0.96834 1.10283 1.24868 0.99991 0.88048 1.01840 1.74016 0.93732 1.26499 1.18990 1.48135 1.09118 1.00831 1.47097 1.22232 0.76239 1.00694 1.04361 1.74595 1.16925 1.01083 1.17068 0.92429 0.90782 0.90280 0.90118 0.89583 0.91329 0.91945 0.96403 0.96121 0.78308 0.93511 0.77452 0.88930 0.87593 0.87620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 9.36 59.85 0.56 1.40 16 2 N -0.60 -8.00 2.87 -182.71 -0.52 -8.52 16 3 C 0.12 1.70 5.34 -4.05 -0.02 1.68 16 4 C -0.14 -2.45 5.65 -26.73 -0.15 -2.60 16 5 C 0.16 3.31 6.26 -4.04 -0.03 3.28 16 6 N -0.73 -19.68 5.60 -59.91 -0.34 -20.02 16 7 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 10 N -0.94 -29.27 13.06 55.49 0.72 -28.54 16 11 Si 0.91 23.02 29.55 -169.99 -5.02 18.00 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 C 0.60 8.95 7.67 -12.35 -0.09 8.86 16 16 O -0.52 -9.33 16.59 5.32 0.09 -9.24 16 17 C -0.04 -0.50 6.79 -82.68 -0.56 -1.07 16 18 C 0.04 0.41 12.05 -16.84 -0.20 0.21 16 19 N -0.29 -3.16 12.01 30.90 0.37 -2.78 16 20 N -0.15 -1.38 4.35 -16.64 -0.07 -1.45 16 21 C 0.10 0.38 11.55 59.85 0.69 1.07 16 22 N -0.25 -2.69 8.96 33.42 0.30 -2.39 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.69 8.04 -51.92 -0.42 0.27 16 25 H 0.08 0.81 5.92 -51.93 -0.31 0.51 16 26 H 0.08 0.95 8.07 -51.93 -0.42 0.53 16 27 H 0.09 1.29 7.50 -51.93 -0.39 0.90 16 28 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.38 10.82 7.67 -40.82 -0.31 10.50 16 33 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 34 H 0.21 1.96 8.06 -52.49 -0.42 1.54 16 35 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.11 0.23 8.14 -51.93 -0.42 -0.20 16 LS Contribution 321.02 15.07 4.84 4.84 Total: -1.00 -36.32 321.02 -4.88 -41.20 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -5.20 Total: 3.76 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -0.05 Total: 5.15 kcal Atomic # 7 Polarization: -64.17 SS G_CDS: 0.46 Total: -63.71 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -36.32 -4.88 -41.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569247812.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.612 kcal (2) G-P(sol) polarization free energy of solvation -36.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds