Wall clock time and date at job start Mon Mar 30 2020 00:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 120.00157 * 2 1 4 4 C 1.52998 * 109.47339 * 270.00140 * 3 2 1 5 5 C 1.53000 * 109.46834 * 180.02562 * 4 3 2 6 6 N 1.46502 * 109.46881 * 180.02562 * 5 4 3 7 7 C 1.36942 * 119.99973 * 179.97438 * 6 5 4 8 8 H 1.07999 * 119.99855 * 359.97438 * 7 6 5 9 9 C 1.38810 * 119.99997 * 179.97438 * 7 6 5 10 10 N 1.31620 * 119.99884 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00173 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47026 * 60.00062 * 11 9 7 13 13 H 1.48497 * 109.47155 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46973 * 300.00175 * 11 9 7 15 15 C 1.34780 * 119.99536 * 180.02562 * 2 1 3 16 16 O 1.21554 * 119.99497 * 174.50882 * 15 2 1 17 17 C 1.47800 * 120.00132 * 354.77847 * 15 2 1 18 18 C 1.40917 * 127.23755 * 173.77964 * 17 15 2 19 19 N 1.31136 * 105.77776 * 180.02562 * 18 17 15 20 20 N 1.28516 * 109.05755 * 359.97438 * 19 18 17 21 21 C 1.46497 * 124.44187 * 180.02562 * 20 19 18 22 22 N 1.28591 * 111.10979 * 359.72627 * 20 19 18 23 23 H 1.08994 * 109.47490 * 265.32090 * 1 2 3 24 24 H 1.09009 * 109.46841 * 25.32058 * 1 2 3 25 25 H 1.08999 * 109.47354 * 145.31663 * 1 2 3 26 26 H 1.09003 * 109.47007 * 30.00754 * 3 2 1 27 27 H 1.09006 * 109.46806 * 149.99857 * 3 2 1 28 28 H 1.09001 * 109.47091 * 300.00064 * 4 3 2 29 29 H 1.08999 * 109.47017 * 60.00112 * 4 3 2 30 30 H 1.09001 * 109.47167 * 299.99813 * 5 4 3 31 31 H 1.08999 * 109.47394 * 60.00139 * 5 4 3 32 32 H 0.97005 * 120.00035 * 0.02562 * 6 5 4 33 33 H 0.97000 * 119.99708 * 179.97438 * 10 9 7 34 34 H 1.08002 * 127.11351 * 359.97037 * 18 17 15 35 35 H 1.08997 * 109.47624 * 90.02575 * 21 20 19 36 36 H 1.09004 * 109.46616 * 210.02768 * 21 20 19 37 37 H 1.09003 * 109.47335 * 330.02422 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 6 3.2181 3.0351 -1.4423 6 7 3.4618 3.4584 -2.8235 7 6 4.1349 4.6244 -3.0737 8 1 4.4858 5.2321 -2.2528 9 6 4.3662 5.0252 -4.3824 10 7 3.9382 4.2848 -5.3828 11 14 5.2850 6.6154 -4.7237 12 1 6.6424 6.5408 -4.1261 13 1 5.3998 6.8157 -6.1906 14 1 4.5428 7.7541 -4.1256 15 6 2.1388 -1.1673 -0.0005 16 8 3.3502 -1.1696 -0.1013 17 6 1.4044 -2.4446 0.1154 18 6 1.9349 -3.7459 0.0102 19 7 0.9202 -4.5593 0.1789 20 7 -0.1451 -3.8669 0.3719 21 6 -1.4749 -4.4382 0.5986 22 7 0.1104 -2.6069 0.3459 23 1 -0.3634 -0.0838 1.0242 24 1 -0.3633 0.9290 -0.4396 25 1 -0.3634 -0.8450 -0.5848 26 1 1.6085 2.0283 0.5140 27 1 3.1500 1.1383 0.5139 28 1 3.0416 0.9507 -1.9563 29 1 1.5001 1.8408 -1.9563 30 1 2.6295 3.7949 -0.9283 31 1 4.1706 2.9043 -0.9286 32 1 3.1457 2.9130 -3.5609 33 1 4.0995 4.5650 -6.2973 34 1 2.9641 -4.0172 -0.1726 35 1 -1.6281 -4.5895 1.6671 36 1 -2.2337 -3.7557 0.2157 37 1 -1.5525 -5.3947 0.0815 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569247812.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:07 Heat of formation + Delta-G solvation = 71.328684 kcal Electronic energy + Delta-G solvation = -19663.451963 eV Core-core repulsion = 16478.593735 eV Total energy + Delta-G solvation = -3184.858228 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -44.72088 -40.82572 -37.56601 -36.47000 -34.86704 -34.20596 -33.55024 -31.55603 -29.03704 -27.98424 -27.04787 -25.32754 -23.88297 -23.03801 -22.48333 -20.67018 -19.14828 -18.46319 -18.11511 -17.98375 -17.23182 -16.55172 -16.31028 -15.96348 -15.76837 -15.31186 -15.17482 -14.61907 -14.13261 -13.80046 -13.69036 -13.60907 -13.37683 -13.26721 -12.95722 -12.74164 -12.72108 -12.42532 -12.08766 -11.91711 -11.82268 -11.77531 -11.48646 -11.30390 -10.92551 -10.49129 -9.74568 -9.01805 -7.95317 -5.25415 0.18267 0.84701 1.25463 1.47224 1.51675 1.57651 1.89708 2.10736 2.56854 2.81684 3.38017 3.58502 3.86721 3.91739 4.07515 4.23897 4.30594 4.33361 4.38628 4.47556 4.54127 4.61158 4.68276 4.72563 4.74493 4.86799 4.90064 5.00595 5.30362 5.31613 5.48708 5.49921 5.56789 6.22075 6.26652 6.89781 7.07170 7.32012 8.07744 8.30990 9.28542 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.043306 B = 0.003022 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.409742 B = 9261.731138 C = 9317.960215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.599 5.599 3 C 0.129 3.871 4 C -0.123 4.123 5 C 0.155 3.845 6 N -0.750 5.750 7 C -0.249 4.249 8 H 0.079 0.921 9 C -0.080 4.080 10 N -0.973 5.973 11 Si 0.979 3.021 12 H -0.278 1.278 13 H -0.294 1.294 14 H -0.274 1.274 15 C 0.597 3.403 16 O -0.563 6.563 17 C -0.066 4.066 18 C 0.026 3.974 19 N -0.299 5.299 20 N -0.136 5.136 21 C 0.087 3.913 22 N -0.239 5.239 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.113 0.887 27 H 0.075 0.925 28 H 0.039 0.961 29 H 0.066 0.934 30 H 0.036 0.964 31 H 0.017 0.983 32 H 0.372 0.628 33 H 0.252 0.748 34 H 0.217 0.783 35 H 0.114 0.886 36 H 0.126 0.874 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.255 -17.743 15.952 28.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.330 5.330 3 C 0.006 3.994 4 C -0.162 4.162 5 C 0.028 3.972 6 N -0.393 5.393 7 C -0.381 4.381 8 H 0.097 0.903 9 C -0.271 4.271 10 N -0.624 5.624 11 Si 0.807 3.193 12 H -0.204 1.204 13 H -0.221 1.221 14 H -0.199 1.199 15 C 0.383 3.617 16 O -0.441 6.441 17 C -0.226 4.226 18 C -0.156 4.156 19 N -0.139 5.139 20 N -0.041 5.041 21 C -0.050 4.050 22 N -0.090 5.090 23 H 0.094 0.906 24 H 0.105 0.895 25 H 0.097 0.903 26 H 0.132 0.868 27 H 0.094 0.906 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.054 0.946 31 H 0.035 0.965 32 H 0.203 0.797 33 H 0.061 0.939 34 H 0.234 0.766 35 H 0.132 0.868 36 H 0.144 0.856 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.800 -18.111 16.194 28.981 hybrid contribution 1.382 0.847 -1.020 1.916 sum -14.418 -17.263 15.173 27.132 Atomic orbital electron populations 1.22124 0.76538 1.03958 1.03411 1.47802 1.08894 1.05029 1.71268 1.21451 0.97995 0.84155 0.95791 1.21876 1.00170 0.96362 0.97828 1.20708 0.96576 0.93908 0.85980 1.42622 1.68213 1.25439 1.03023 1.19665 1.27360 0.98837 0.92228 0.90342 1.25669 1.03259 1.02776 0.95437 1.69833 1.53285 1.40936 0.98299 0.85126 0.78581 0.79266 0.76280 1.20400 1.22060 1.19937 1.17050 0.85750 0.82363 0.76488 1.90814 1.14531 1.86971 1.51737 1.22818 0.90839 0.96214 1.12751 1.25088 1.00820 0.87847 1.01881 1.74026 0.94048 1.26491 1.19351 1.48774 1.10253 1.00374 1.44681 1.22815 0.74059 1.01832 1.06255 1.74541 1.15847 1.01959 1.16659 0.90630 0.89511 0.90345 0.86845 0.90641 0.94193 0.91530 0.94636 0.96468 0.79699 0.93946 0.76637 0.86797 0.85597 0.85901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.49 9.36 127.77 1.20 2.68 16 2 N -0.60 -15.41 2.87 -850.24 -2.44 -17.85 16 3 C 0.13 3.49 5.34 86.38 0.46 3.96 16 4 C -0.12 -4.30 5.65 30.59 0.17 -4.13 16 5 C 0.16 6.49 6.26 86.38 0.54 7.03 16 6 N -0.75 -40.64 5.60 -343.45 -1.92 -42.56 16 7 C -0.25 -14.54 9.99 84.03 0.84 -13.70 16 8 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 9 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 10 N -0.97 -61.78 13.06 21.65 0.28 -61.50 16 11 Si 0.98 47.31 29.55 68.60 2.03 49.34 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 14 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 15 C 0.60 17.92 7.67 86.77 0.67 18.58 16 16 O -0.56 -20.98 16.59 -3.89 -0.06 -21.05 16 17 C -0.07 -1.65 6.79 42.24 0.29 -1.36 16 18 C 0.03 0.59 12.05 85.45 1.03 1.62 16 19 N -0.30 -6.07 12.01 -56.17 -0.67 -6.74 16 20 N -0.14 -2.23 4.35 -206.54 -0.90 -3.13 16 21 C 0.09 0.37 11.55 127.77 1.48 1.85 16 22 N -0.24 -4.80 8.96 -48.17 -0.43 -5.23 16 23 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.09 1.37 8.04 -2.38 -0.02 1.35 16 25 H 0.08 1.47 5.92 -2.39 -0.01 1.45 16 26 H 0.11 2.36 8.07 -2.39 -0.02 2.34 16 27 H 0.08 2.24 7.50 -2.38 -0.02 2.22 16 28 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.37 21.48 7.67 -92.70 -0.71 20.77 16 33 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 34 H 0.22 4.22 8.06 -2.91 -0.02 4.20 16 35 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 36 H 0.13 0.07 8.14 -2.39 -0.02 0.05 16 37 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 Total: -1.00 -78.90 321.02 3.38 -75.52 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.37 Total: 20.95 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: 7.14 Total: 12.26 kcal Atomic # 7 Polarization: -130.92 SS G_CDS: -6.09 Total: -137.01 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.06 Total: -21.05 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -78.90 3.38 -75.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569247812.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.846 kcal (2) G-P(sol) polarization free energy of solvation -78.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds