Wall clock time and date at job start Mon Mar 30 2020 00:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 5 5 C 1.36929 * 119.99904 * 275.00051 * 4 2 1 6 6 H 1.08004 * 120.00323 * 359.97438 * 5 4 2 7 7 C 1.38815 * 119.99984 * 179.97438 * 5 4 2 8 8 N 1.31615 * 120.00318 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00100 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47064 * 89.99896 * 9 7 5 11 11 H 1.48501 * 109.47532 * 210.00413 * 9 7 5 12 12 H 1.48506 * 109.47200 * 330.00329 * 9 7 5 13 13 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 14 14 H 1.08997 * 109.47756 * 174.99755 * 13 2 1 15 15 C 1.53005 * 109.47264 * 295.00560 * 13 2 1 16 16 N 1.46504 * 109.46795 * 55.00087 * 13 2 1 17 17 C 1.34780 * 120.00174 * 155.00104 * 16 13 2 18 18 O 1.21565 * 119.99877 * 0.02562 * 17 16 13 19 19 C 1.47798 * 120.00406 * 180.02562 * 17 16 13 20 20 C 1.40921 * 127.23870 * 180.02562 * 19 17 16 21 21 N 1.31136 * 105.77612 * 180.02562 * 20 19 17 22 22 N 1.28520 * 109.05574 * 359.97438 * 21 20 19 23 23 C 1.46503 * 124.43986 * 179.97438 * 22 21 20 24 24 N 1.28584 * 111.11700 * 359.72267 * 22 21 20 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 0.97000 * 120.00117 * 94.99845 * 4 2 1 29 29 H 0.96990 * 120.00689 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.46897 * 179.97438 * 15 13 2 31 31 H 1.08997 * 109.46584 * 299.99168 * 15 13 2 32 32 H 1.08999 * 109.47123 * 59.99430 * 15 13 2 33 33 H 0.97000 * 120.00109 * 335.00248 * 16 13 2 34 34 H 1.08001 * 127.11016 * 0.02562 * 20 19 17 35 35 H 1.09000 * 109.47231 * 90.02686 * 23 22 21 36 36 H 1.08994 * 109.47100 * 210.02608 * 23 22 21 37 37 H 1.09003 * 109.47072 * 330.02409 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8927 1.0405 2.4241 7 6 2.6114 -0.6620 3.5093 8 7 2.9245 -1.9390 3.4502 9 14 2.7905 0.2700 5.1182 10 1 1.5227 0.1799 5.8862 11 1 3.8947 -0.3237 5.9140 12 1 3.0964 1.6951 4.8333 13 6 2.0400 -0.7213 -1.2492 14 1 3.1263 -0.6444 -1.2952 15 6 1.6352 -2.1955 -1.1879 16 7 1.4559 -0.1037 -2.4423 17 6 2.0912 -0.1938 -3.6276 18 8 3.1488 -0.7880 -3.7066 19 6 1.5022 0.4297 -4.8312 20 6 2.0310 0.4291 -6.1374 21 7 1.1735 1.0986 -6.8695 22 7 0.2007 1.4881 -6.1255 23 6 -0.9463 2.2657 -6.6009 24 7 0.3634 1.1013 -4.9100 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 2.2491 -1.6318 1.1527 29 1 3.2478 -2.3963 4.2421 30 1 1.9982 -2.7093 -2.0781 31 1 2.0698 -2.6550 -0.3002 32 1 0.5489 -2.2724 -1.1420 33 1 0.6118 0.3701 -2.3794 34 1 2.9522 -0.0282 -6.4673 35 1 -1.7364 1.5877 -6.9234 36 1 -1.3167 2.8975 -5.7937 37 1 -0.6390 2.8907 -7.4395 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570639284.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:40 Heat of formation + Delta-G solvation = 88.964980 kcal Electronic energy + Delta-G solvation = -20101.305919 eV Core-core repulsion = 16917.212458 eV Total energy + Delta-G solvation = -3184.093461 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.83573 -39.56477 -36.89629 -34.06938 -33.94231 -32.90971 -31.65890 -29.47066 -28.19558 -28.13007 -24.79005 -24.19203 -22.81079 -22.27758 -20.40978 -19.24251 -17.97739 -17.37186 -17.21851 -16.98646 -15.53954 -15.00346 -14.89310 -14.51268 -14.27350 -14.01261 -13.48827 -13.35947 -13.29320 -12.82368 -12.42449 -12.10437 -11.94752 -11.61751 -11.29051 -11.22409 -10.93459 -10.82659 -10.65051 -10.47081 -10.25288 -10.07730 -9.95581 -9.65241 -9.63806 -8.93520 -8.80856 -6.99627 -5.77508 -3.06961 1.17231 1.78158 1.91916 3.20182 3.31043 3.43860 3.49218 3.50813 3.75852 4.56810 4.59233 4.60981 4.76974 4.86388 4.99437 5.36346 5.46969 5.49593 5.64661 5.66831 5.78978 5.84416 6.08792 6.16979 6.26800 6.31775 6.42289 6.47320 6.65129 6.73834 6.90807 7.09158 7.60859 7.69694 7.93197 8.28682 8.41083 9.52335 10.07588 10.42715 11.45128 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.036990 B = 0.003682 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.775246 B = 7602.667276 C = 7956.894739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.168 3.832 3 H 0.052 0.948 4 N -0.719 5.719 5 C -0.241 4.241 6 H 0.071 0.929 7 C -0.012 4.012 8 N -0.932 5.932 9 Si 0.908 3.092 10 H -0.290 1.290 11 H -0.291 1.291 12 H -0.282 1.282 13 C 0.135 3.865 14 H 0.092 0.908 15 C -0.160 4.160 16 N -0.702 5.702 17 C 0.604 3.396 18 O -0.528 6.528 19 C -0.040 4.040 20 C 0.034 3.966 21 N -0.294 5.294 22 N -0.147 5.147 23 C 0.104 3.896 24 N -0.251 5.251 25 H 0.034 0.966 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.387 0.613 29 H 0.256 0.744 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.404 0.596 34 H 0.209 0.791 35 H 0.093 0.907 36 H 0.106 0.894 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.306 6.748 -20.014 22.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.057 3.943 3 H 0.070 0.930 4 N -0.363 5.363 5 C -0.372 4.372 6 H 0.089 0.911 7 C -0.208 4.208 8 N -0.580 5.580 9 Si 0.739 3.261 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C 0.031 3.969 14 H 0.110 0.890 15 C -0.218 4.218 16 N -0.354 5.354 17 C 0.387 3.613 18 O -0.403 6.403 19 C -0.203 4.203 20 C -0.149 4.149 21 N -0.134 5.134 22 N -0.050 5.050 23 C -0.035 4.035 24 N -0.100 5.100 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.223 0.777 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.241 0.759 34 H 0.225 0.775 35 H 0.111 0.889 36 H 0.125 0.875 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.587 7.155 -20.331 23.201 hybrid contribution 0.325 -0.053 1.178 1.223 sum -8.261 7.102 -19.153 22.035 Atomic orbital electron populations 1.22540 0.99269 1.01314 0.99820 1.20357 0.92232 0.95621 0.86056 0.92957 1.42449 1.78232 1.10799 1.04784 1.19228 1.36859 0.93961 0.87130 0.91111 1.24739 1.01967 0.95999 0.98086 1.69650 1.50685 1.08675 1.28957 0.86185 0.77273 0.78816 0.83858 1.21752 1.21770 1.20757 1.21430 0.99181 0.92998 0.83326 0.89037 1.22152 1.01620 0.95600 1.02433 1.46124 1.25750 1.55750 1.07787 1.16652 0.83929 0.79474 0.81293 1.90823 1.21741 1.42845 1.84851 1.23234 0.94246 1.05470 0.97395 1.24862 1.00800 0.99949 0.89316 1.74008 0.98930 1.15365 1.25062 1.48033 1.17424 1.37316 1.02180 1.22238 0.83553 0.95417 1.02320 1.74390 1.18284 1.13040 1.04242 0.94763 0.92355 0.92769 0.77742 0.93430 0.92952 0.90306 0.92475 0.75915 0.77468 0.88893 0.87547 0.87628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 9.01 37.16 0.33 -2.56 16 2 C 0.17 3.27 2.93 -67.93 -0.20 3.07 16 3 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 4 N -0.72 -17.61 5.03 -53.43 -0.27 -17.87 16 5 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 6 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 7 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 8 N -0.93 -27.85 13.06 55.49 0.72 -27.12 16 9 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 13 C 0.13 2.37 2.62 -67.93 -0.18 2.19 16 14 H 0.09 1.80 7.58 -51.93 -0.39 1.40 16 15 C -0.16 -2.73 9.00 37.16 0.33 -2.39 16 16 N -0.70 -10.55 4.99 -54.76 -0.27 -10.82 16 17 C 0.60 9.44 7.79 -12.35 -0.10 9.35 16 18 O -0.53 -9.70 16.62 5.31 0.09 -9.61 16 19 C -0.04 -0.54 7.21 -82.68 -0.60 -1.14 16 20 C 0.03 0.41 12.04 -16.83 -0.20 0.20 16 21 N -0.29 -3.32 12.01 30.90 0.37 -2.95 16 22 N -0.15 -1.49 4.34 -16.63 -0.07 -1.56 16 23 C 0.10 0.47 11.55 59.85 0.69 1.16 16 24 N -0.25 -3.04 11.84 33.42 0.40 -2.65 16 25 H 0.03 0.47 6.29 -51.93 -0.33 0.15 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.05 0.93 6.57 -51.93 -0.34 0.59 16 28 H 0.39 9.97 5.77 -40.82 -0.24 9.73 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.48 6.29 -51.93 -0.33 1.16 16 32 H 0.06 0.91 6.57 -51.93 -0.34 0.57 16 33 H 0.40 5.43 6.35 -40.82 -0.26 5.17 16 34 H 0.21 1.98 8.06 -52.49 -0.42 1.56 16 35 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 314.74 15.07 4.74 4.74 Total: -1.00 -33.31 314.74 -4.20 -37.51 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -4.73 Total: 10.39 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -0.16 Total: 2.73 kcal Atomic # 7 Polarization: -63.84 SS G_CDS: 0.88 Total: -62.97 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.61 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.31 -4.20 -37.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570639284.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.470 kcal (2) G-P(sol) polarization free energy of solvation -33.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds