Wall clock time and date at job start Mon Mar 30 2020 00:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47409 * 2 1 4 4 N 1.46507 * 109.47624 * 120.00227 * 2 1 3 5 5 C 1.36935 * 119.99742 * 275.00187 * 4 2 1 6 6 H 1.07999 * 120.00083 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99986 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99464 * 0.27719 * 7 5 4 9 9 Si 1.86800 * 119.99902 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47035 * 60.00419 * 9 7 5 11 11 H 1.48503 * 109.46845 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47237 * 300.00175 * 9 7 5 13 13 C 1.52999 * 109.47151 * 240.00170 * 2 1 3 14 14 H 1.09007 * 109.47200 * 299.99986 * 13 2 1 15 15 C 1.52995 * 109.47524 * 179.97438 * 13 2 1 16 16 N 1.46499 * 109.47155 * 59.99851 * 13 2 1 17 17 C 1.34774 * 119.99966 * 205.00185 * 16 13 2 18 18 O 1.21557 * 120.00168 * 359.97438 * 17 16 13 19 19 C 1.47804 * 120.00063 * 179.97438 * 17 16 13 20 20 C 1.40925 * 127.23673 * 179.97438 * 19 17 16 21 21 N 1.31135 * 105.77211 * 180.02562 * 20 19 17 22 22 N 1.28519 * 109.06379 * 359.97438 * 21 20 19 23 23 C 1.46498 * 124.44655 * 179.97438 * 22 21 20 24 24 N 1.28596 * 111.10801 * 359.72349 * 22 21 20 25 25 H 1.09004 * 109.46628 * 299.99615 * 1 2 3 26 26 H 1.08991 * 109.47518 * 59.99601 * 1 2 3 27 27 H 1.09003 * 109.47095 * 180.02562 * 1 2 3 28 28 H 0.96999 * 120.00180 * 94.99114 * 4 2 1 29 29 H 0.97001 * 120.00638 * 359.71685 * 8 7 5 30 30 H 1.09001 * 109.47831 * 179.97438 * 15 13 2 31 31 H 1.09001 * 109.47189 * 300.00431 * 15 13 2 32 32 H 1.09005 * 109.47314 * 59.99924 * 15 13 2 33 33 H 0.96999 * 119.99984 * 25.00030 * 16 13 2 34 34 H 1.07994 * 127.11297 * 0.02562 * 20 19 17 35 35 H 1.09007 * 109.47011 * 90.02121 * 23 22 21 36 36 H 1.08999 * 109.46932 * 210.02389 * 23 22 21 37 37 H 1.09000 * 109.47037 * 330.02650 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1492 -0.0075 2.3757 6 1 1.8927 1.0404 2.4242 7 6 2.6115 -0.6620 3.5093 8 7 2.9293 -1.9378 3.4488 9 14 2.7906 0.2700 5.1182 10 1 1.4686 0.8077 5.5285 11 1 3.2984 -0.6487 6.1686 12 1 3.7466 1.3919 4.9366 13 6 2.0400 -0.7212 -1.2492 14 1 1.6766 -1.7489 -1.2493 15 6 3.5699 -0.7207 -1.2497 16 7 1.5516 -0.0306 -2.4454 17 6 1.4229 -0.7029 -3.6063 18 8 1.7124 -1.8822 -3.6611 19 6 0.9296 -0.0063 -4.8130 20 6 0.7380 -0.5559 -6.0965 21 7 0.2915 0.4263 -6.8418 22 7 0.2029 1.4899 -6.1257 23 6 -0.2600 2.7877 -6.6232 24 7 0.5692 1.2640 -4.9138 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 2.2491 -1.6318 1.1526 29 1 2.8366 -2.4218 2.6133 30 1 3.9333 -1.2349 -2.1394 31 1 3.9329 0.3071 -1.2498 32 1 3.9337 -1.2343 -0.3597 33 1 1.3209 0.9105 -2.4018 34 1 0.9209 -1.5752 -6.4028 35 1 -1.3402 2.8611 -6.4963 36 1 0.2267 3.5861 -6.0631 37 1 -0.0112 2.8813 -7.6802 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570639286.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:44 Heat of formation + Delta-G solvation = 84.945819 kcal Electronic energy + Delta-G solvation = -20126.144658 eV Core-core repulsion = 16941.876913 eV Total energy + Delta-G solvation = -3184.267745 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.87190 -39.60323 -36.85258 -34.21582 -34.07280 -32.97787 -31.72305 -29.64497 -28.31713 -28.02586 -24.59552 -23.80745 -22.55004 -22.29582 -20.35067 -20.18137 -17.98066 -17.45156 -17.25178 -17.08623 -15.74842 -15.08671 -14.89574 -14.62587 -14.06070 -13.66003 -13.60252 -13.43424 -13.31852 -13.08285 -12.66518 -12.20369 -11.91548 -11.72767 -11.27900 -11.26224 -10.95381 -10.69476 -10.67438 -10.54806 -10.13586 -10.08073 -9.96106 -9.68020 -9.21366 -9.03328 -8.80516 -7.06057 -6.09779 -3.10742 1.13125 1.74324 1.88474 3.13201 3.25625 3.51959 3.55316 3.71390 3.73051 4.54018 4.56878 4.67943 4.73216 4.83900 4.94019 5.23076 5.43739 5.49702 5.55416 5.71120 5.73986 5.79319 6.04234 6.12917 6.23574 6.30608 6.34294 6.44097 6.54415 6.72740 6.83977 6.96045 7.54347 7.79750 7.89012 8.22096 8.75278 9.20762 10.07058 10.21474 11.38376 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.038423 B = 0.003700 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.559838 B = 7566.590436 C = 7980.338380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.175 3.825 3 H 0.053 0.947 4 N -0.729 5.729 5 C -0.331 4.331 6 H 0.065 0.935 7 C -0.043 4.043 8 N -0.942 5.942 9 Si 1.080 2.920 10 H -0.296 1.296 11 H -0.285 1.285 12 H -0.295 1.295 13 C 0.134 3.866 14 H 0.087 0.913 15 C -0.152 4.152 16 N -0.700 5.700 17 C 0.606 3.394 18 O -0.529 6.529 19 C -0.041 4.041 20 C 0.034 3.966 21 N -0.293 5.293 22 N -0.146 5.146 23 C 0.104 3.896 24 N -0.250 5.250 25 H 0.055 0.945 26 H 0.037 0.963 27 H 0.046 0.954 28 H 0.368 0.632 29 H 0.256 0.744 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.404 0.596 34 H 0.209 0.791 35 H 0.093 0.907 36 H 0.106 0.894 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.669 9.277 -20.270 23.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.070 0.930 4 N -0.372 5.372 5 C -0.462 4.462 6 H 0.083 0.917 7 C -0.241 4.241 8 N -0.587 5.587 9 Si 0.911 3.089 10 H -0.223 1.223 11 H -0.211 1.211 12 H -0.223 1.223 13 C 0.030 3.970 14 H 0.105 0.895 15 C -0.211 4.211 16 N -0.350 5.350 17 C 0.389 3.611 18 O -0.403 6.403 19 C -0.204 4.204 20 C -0.149 4.149 21 N -0.133 5.133 22 N -0.049 5.049 23 C -0.035 4.035 24 N -0.099 5.099 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.202 0.798 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.239 0.761 34 H 0.225 0.775 35 H 0.112 0.888 36 H 0.125 0.875 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.471 9.733 -19.097 22.121 hybrid contribution -0.389 -0.333 -1.405 1.495 sum -5.860 9.400 -20.502 23.303 Atomic orbital electron populations 1.22432 0.98906 1.01078 1.00028 1.20317 0.92149 0.95595 0.85544 0.92951 1.42290 1.79362 1.09813 1.05775 1.19993 1.42246 0.95076 0.88838 0.91733 1.25752 0.99301 0.97492 1.01557 1.70873 1.50911 1.08402 1.28560 0.83247 0.75836 0.74276 0.75586 1.22325 1.21062 1.22282 1.21436 0.94602 0.97616 0.83386 0.89488 1.22051 0.94687 1.02008 1.02318 1.45912 1.65639 1.14296 1.09156 1.16615 0.77764 0.85633 0.81136 1.90819 1.50606 1.14655 1.84224 1.23204 1.08876 0.90631 0.97682 1.24861 1.00403 1.00228 0.89426 1.74008 1.19669 0.94214 1.25421 1.48040 1.43639 1.10180 1.03049 1.22246 1.01751 0.77631 1.01912 1.74391 1.13931 1.17807 1.03770 0.92540 0.94389 0.93491 0.79782 0.93273 0.93142 0.92858 0.90348 0.76095 0.77475 0.88848 0.87544 0.87610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 9.33 37.16 0.35 -2.65 16 2 C 0.17 3.40 2.52 -67.93 -0.17 3.23 16 3 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 4 N -0.73 -17.74 4.43 -53.42 -0.24 -17.98 16 5 C -0.33 -9.07 9.93 -15.06 -0.15 -9.22 16 6 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 7 C -0.04 -1.24 5.50 -17.43 -0.10 -1.33 16 8 N -0.94 -28.89 13.70 55.49 0.76 -28.13 16 9 Si 1.08 25.68 29.92 -169.99 -5.09 20.59 16 10 H -0.30 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.30 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.13 2.33 2.21 -67.93 -0.15 2.18 16 14 H 0.09 1.65 7.58 -51.92 -0.39 1.26 16 15 C -0.15 -2.65 9.33 37.16 0.35 -2.31 16 16 N -0.70 -10.37 4.38 -54.76 -0.24 -10.61 16 17 C 0.61 9.34 7.79 -12.35 -0.10 9.25 16 18 O -0.53 -9.59 16.61 5.32 0.09 -9.50 16 19 C -0.04 -0.54 7.21 -82.68 -0.60 -1.14 16 20 C 0.03 0.40 12.04 -16.83 -0.20 0.20 16 21 N -0.29 -3.29 12.01 30.90 0.37 -2.92 16 22 N -0.15 -1.47 4.35 -16.63 -0.07 -1.54 16 23 C 0.10 0.46 11.55 59.85 0.69 1.16 16 24 N -0.25 -3.00 11.84 33.42 0.40 -2.61 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.04 0.58 7.44 -51.93 -0.39 0.20 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.37 9.36 6.42 -40.82 -0.26 9.09 16 29 H 0.26 7.73 6.77 -40.82 -0.28 7.46 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 1.52 7.45 -51.93 -0.39 1.14 16 33 H 0.40 5.33 8.16 -40.82 -0.33 5.00 16 34 H 0.21 1.96 8.06 -52.49 -0.42 1.54 16 35 H 0.09 0.28 8.14 -51.92 -0.42 -0.14 16 36 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 320.74 15.07 4.83 4.83 Total: -1.00 -34.10 320.74 -4.31 -38.41 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -5.05 Total: 10.09 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -0.08 Total: -0.64 kcal Atomic # 7 Polarization: -64.76 SS G_CDS: 0.98 Total: -63.79 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -5.09 Total: 20.59 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.10 -4.31 -38.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570639286.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.356 kcal (2) G-P(sol) polarization free energy of solvation -34.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds