Wall clock time and date at job start Mon Mar 30 2020 00:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47409 * 2 1 4 4 N 1.46507 * 109.47624 * 120.00227 * 2 1 3 5 5 C 1.36935 * 119.99742 * 275.00187 * 4 2 1 6 6 H 1.07999 * 120.00083 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99986 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99464 * 0.27719 * 7 5 4 9 9 Si 1.86800 * 119.99902 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47035 * 60.00419 * 9 7 5 11 11 H 1.48503 * 109.46845 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47237 * 300.00175 * 9 7 5 13 13 C 1.52999 * 109.47151 * 240.00170 * 2 1 3 14 14 H 1.09007 * 109.47200 * 299.99986 * 13 2 1 15 15 C 1.52995 * 109.47524 * 179.97438 * 13 2 1 16 16 N 1.46499 * 109.47155 * 59.99851 * 13 2 1 17 17 C 1.34774 * 119.99966 * 205.00185 * 16 13 2 18 18 O 1.21557 * 120.00168 * 359.97438 * 17 16 13 19 19 C 1.47804 * 120.00063 * 179.97438 * 17 16 13 20 20 C 1.40925 * 127.23673 * 179.97438 * 19 17 16 21 21 N 1.31135 * 105.77211 * 180.02562 * 20 19 17 22 22 N 1.28519 * 109.06379 * 359.97438 * 21 20 19 23 23 C 1.46498 * 124.44655 * 179.97438 * 22 21 20 24 24 N 1.28596 * 111.10801 * 359.72349 * 22 21 20 25 25 H 1.09004 * 109.46628 * 299.99615 * 1 2 3 26 26 H 1.08991 * 109.47518 * 59.99601 * 1 2 3 27 27 H 1.09003 * 109.47095 * 180.02562 * 1 2 3 28 28 H 0.96999 * 120.00180 * 94.99114 * 4 2 1 29 29 H 0.97001 * 120.00638 * 359.71685 * 8 7 5 30 30 H 1.09001 * 109.47831 * 179.97438 * 15 13 2 31 31 H 1.09001 * 109.47189 * 300.00431 * 15 13 2 32 32 H 1.09005 * 109.47314 * 59.99924 * 15 13 2 33 33 H 0.96999 * 119.99984 * 25.00030 * 16 13 2 34 34 H 1.07994 * 127.11297 * 0.02562 * 20 19 17 35 35 H 1.09007 * 109.47011 * 90.02121 * 23 22 21 36 36 H 1.08999 * 109.46932 * 210.02389 * 23 22 21 37 37 H 1.09000 * 109.47037 * 330.02650 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1492 -0.0075 2.3757 6 1 1.8927 1.0404 2.4242 7 6 2.6115 -0.6620 3.5093 8 7 2.9293 -1.9378 3.4488 9 14 2.7906 0.2700 5.1182 10 1 1.4686 0.8077 5.5285 11 1 3.2984 -0.6487 6.1686 12 1 3.7466 1.3919 4.9366 13 6 2.0400 -0.7212 -1.2492 14 1 1.6766 -1.7489 -1.2493 15 6 3.5699 -0.7207 -1.2497 16 7 1.5516 -0.0306 -2.4454 17 6 1.4229 -0.7029 -3.6063 18 8 1.7124 -1.8822 -3.6611 19 6 0.9296 -0.0063 -4.8130 20 6 0.7380 -0.5559 -6.0965 21 7 0.2915 0.4263 -6.8418 22 7 0.2029 1.4899 -6.1257 23 6 -0.2600 2.7877 -6.6232 24 7 0.5692 1.2640 -4.9138 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 2.2491 -1.6318 1.1526 29 1 2.8366 -2.4218 2.6133 30 1 3.9333 -1.2349 -2.1394 31 1 3.9329 0.3071 -1.2498 32 1 3.9337 -1.2343 -0.3597 33 1 1.3209 0.9105 -2.4018 34 1 0.9209 -1.5752 -6.4028 35 1 -1.3402 2.8611 -6.4963 36 1 0.2267 3.5861 -6.0631 37 1 -0.0112 2.8813 -7.6802 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570639286.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:44 Heat of formation + Delta-G solvation = 59.178611 kcal Electronic energy + Delta-G solvation = -20127.262008 eV Core-core repulsion = 16941.876913 eV Total energy + Delta-G solvation = -3185.385095 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.72998 -40.90674 -38.42759 -35.90850 -34.83939 -34.04711 -33.32732 -31.08540 -29.99158 -28.87654 -25.80170 -25.67476 -24.00211 -23.12326 -21.70637 -21.55206 -19.49929 -18.98555 -18.05314 -18.03580 -17.22382 -16.55524 -16.00266 -15.84633 -15.68137 -15.33197 -15.11230 -14.75334 -14.26191 -13.87705 -13.67339 -13.56935 -13.26768 -13.05425 -12.91168 -12.60218 -12.48574 -12.29200 -12.16040 -11.86903 -11.67823 -11.57176 -11.44724 -11.19194 -10.96369 -10.54510 -10.19375 -9.11595 -8.33991 -5.29076 0.16031 0.84213 1.23331 1.61306 1.71186 1.86984 1.95106 2.11024 2.74851 2.83629 3.44870 3.61835 3.73206 3.84777 3.97747 4.10065 4.24292 4.29398 4.31333 4.46603 4.49298 4.66234 4.67728 4.77932 4.85212 4.89639 4.94622 5.06439 5.22028 5.37848 5.42090 5.50708 5.64908 6.35387 6.53360 6.96131 7.05472 7.11714 8.00808 8.12866 9.17646 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.038423 B = 0.003700 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.559838 B = 7566.590436 C = 7980.338380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.174 3.826 3 H 0.058 0.942 4 N -0.741 5.741 5 C -0.324 4.324 6 H 0.071 0.929 7 C -0.104 4.104 8 N -0.977 5.977 9 Si 1.127 2.873 10 H -0.279 1.279 11 H -0.297 1.297 12 H -0.277 1.277 13 C 0.149 3.851 14 H 0.069 0.931 15 C -0.144 4.144 16 N -0.690 5.690 17 C 0.610 3.390 18 O -0.561 6.561 19 C -0.065 4.065 20 C 0.030 3.970 21 N -0.297 5.297 22 N -0.133 5.133 23 C 0.087 3.913 24 N -0.251 5.251 25 H 0.042 0.958 26 H 0.070 0.930 27 H 0.035 0.965 28 H 0.360 0.640 29 H 0.244 0.756 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.415 0.585 34 H 0.222 0.778 35 H 0.113 0.887 36 H 0.123 0.877 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.541 11.646 -21.671 25.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.065 3.935 3 H 0.076 0.924 4 N -0.383 5.383 5 C -0.456 4.456 6 H 0.089 0.911 7 C -0.295 4.295 8 N -0.626 5.626 9 Si 0.952 3.048 10 H -0.205 1.205 11 H -0.223 1.223 12 H -0.203 1.203 13 C 0.044 3.956 14 H 0.087 0.913 15 C -0.202 4.202 16 N -0.342 5.342 17 C 0.394 3.606 18 O -0.438 6.438 19 C -0.226 4.226 20 C -0.152 4.152 21 N -0.138 5.138 22 N -0.038 5.038 23 C -0.050 4.050 24 N -0.101 5.101 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.054 0.946 28 H 0.192 0.808 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.252 0.748 34 H 0.239 0.761 35 H 0.131 0.869 36 H 0.142 0.858 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.375 12.157 -20.555 24.717 hybrid contribution -0.192 -0.948 -1.143 1.497 sum -6.566 11.209 -21.698 25.289 Atomic orbital electron populations 1.22281 0.97500 1.00656 1.00937 1.20466 0.92902 0.95456 0.84690 0.92392 1.42456 1.79669 1.09558 1.06646 1.20333 1.40127 0.95356 0.89748 0.91149 1.27124 0.99731 0.97575 1.05104 1.70982 1.53709 1.09739 1.28128 0.82636 0.76849 0.73505 0.71818 1.20482 1.22339 1.20277 1.21022 0.94415 0.96582 0.83596 0.91304 1.21942 0.94705 1.02268 1.01296 1.45684 1.65564 1.14613 1.08291 1.16817 0.76932 0.85242 0.81580 1.90801 1.52007 1.16142 1.84817 1.22820 1.11087 0.91440 0.97266 1.25146 1.00055 1.01140 0.88894 1.74033 1.19848 0.94482 1.25411 1.48662 1.41595 1.11242 1.02312 1.22823 1.03139 0.75664 1.03365 1.74343 1.13872 1.17075 1.04820 0.93844 0.91157 0.94585 0.80826 0.94552 0.92652 0.91882 0.92819 0.74832 0.76121 0.86905 0.85818 0.85535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.43 9.33 71.98 0.67 -4.76 16 2 C 0.17 6.66 2.52 44.99 0.11 6.77 16 3 H 0.06 2.18 8.08 -2.39 -0.02 2.16 16 4 N -0.74 -36.39 4.43 -322.94 -1.43 -37.82 16 5 C -0.32 -17.73 9.93 84.04 0.83 -16.90 16 6 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 7 C -0.10 -5.98 5.50 84.86 0.47 -5.51 16 8 N -0.98 -61.21 13.70 21.65 0.30 -60.92 16 9 Si 1.13 51.49 29.92 68.60 2.05 53.54 16 10 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 12 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 13 C 0.15 5.14 2.21 44.99 0.10 5.24 16 14 H 0.07 2.67 7.58 -2.38 -0.02 2.65 16 15 C -0.14 -5.01 9.33 71.98 0.67 -4.33 16 16 N -0.69 -19.63 4.38 -445.45 -1.95 -21.58 16 17 C 0.61 18.33 7.79 86.77 0.68 19.01 16 18 O -0.56 -20.36 16.61 -3.89 -0.06 -20.42 16 19 C -0.07 -1.64 7.21 42.24 0.30 -1.33 16 20 C 0.03 0.66 12.04 85.46 1.03 1.69 16 21 N -0.30 -6.00 12.01 -56.17 -0.67 -6.67 16 22 N -0.13 -2.31 4.35 -206.54 -0.90 -3.21 16 23 C 0.09 0.48 11.55 127.77 1.48 1.95 16 24 N -0.25 -5.44 11.84 -48.17 -0.57 -6.01 16 25 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 26 H 0.07 2.01 7.44 -2.39 -0.02 1.99 16 27 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.36 18.85 6.42 -92.71 -0.59 18.26 16 29 H 0.24 15.29 6.77 -92.71 -0.63 14.66 16 30 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.05 2.14 7.45 -2.38 -0.02 2.12 16 33 H 0.41 10.08 8.16 -92.71 -0.76 9.32 16 34 H 0.22 3.95 8.06 -2.91 -0.02 3.92 16 35 H 0.11 0.26 8.14 -2.38 -0.02 0.24 16 36 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.13 0.21 8.14 -2.39 -0.02 0.19 16 Total: -1.00 -73.46 320.74 2.99 -70.47 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: -0.11 Total: 30.79 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 6.34 Total: 1.83 kcal Atomic # 7 Polarization: -130.98 SS G_CDS: -5.23 Total: -136.21 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.06 Total: -20.42 kcal Atomic # 14 Polarization: 51.49 SS G_CDS: 2.05 Total: 53.54 kcal Total: -73.46 2.99 -70.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570639286.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.645 kcal (2) G-P(sol) polarization free energy of solvation -73.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds