Wall clock time and date at job start Mon Mar 30 2020 01:08:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86798 * 120.00289 * 2 1
4 4 H 1.48497 * 109.47365 * 179.97438 * 3 2 1
5 5 H 1.48497 * 109.47301 * 300.00222 * 3 2 1
6 6 H 1.48501 * 109.47160 * 60.00015 * 3 2 1
7 7 C 1.37881 * 119.99735 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99651 * 180.02562 * 7 2 1
9 9 C 1.50697 * 120.00229 * 359.97438 * 7 2 1
10 10 C 1.52996 * 109.47446 * 180.02562 * 9 7 2
11 11 C 1.52997 * 109.47375 * 180.02562 * 10 9 7
12 12 N 1.46893 * 109.47241 * 185.97072 * 11 10 9
13 13 C 1.46899 * 111.00026 * 293.16466 * 12 11 10
14 14 C 1.53004 * 117.50158 * 139.82033 * 13 12 11
15 15 C 1.52997 * 117.49843 * 71.16290 * 13 12 11
16 16 C 1.46904 * 111.00169 * 169.20979 * 12 11 10
17 17 C 1.50695 * 112.85058 * 182.59505 * 16 12 11
18 18 O 1.20826 * 120.00145 * 145.00162 * 17 16 12
19 19 O 1.34233 * 120.00123 * 325.00279 * 17 16 12
20 20 C 1.53778 * 113.61272 * 51.40174 * 16 12 11
21 21 C 1.53957 * 87.01842 * 220.05024 * 20 16 12
22 22 C 1.53775 * 113.61264 * 313.79227 * 16 12 11
23 23 H 0.97003 * 119.99385 * 359.97438 * 1 2 3
24 24 H 1.09003 * 109.46986 * 60.00112 * 9 7 2
25 25 H 1.09005 * 109.46985 * 300.00710 * 9 7 2
26 26 H 1.09003 * 109.47252 * 59.99889 * 10 9 7
27 27 H 1.09005 * 109.46554 * 300.00223 * 10 9 7
28 28 H 1.09002 * 109.46883 * 305.96649 * 11 10 9
29 29 H 1.09003 * 109.47556 * 65.96542 * 11 10 9
30 30 H 1.08998 * 115.55094 * 285.49121 * 13 12 11
31 31 H 1.09002 * 117.49412 * 0.02562 * 14 13 12
32 32 H 1.09001 * 117.50018 * 145.01911 * 14 13 12
33 33 H 1.09000 * 117.49876 * 214.98154 * 15 13 12
34 34 H 1.09005 * 117.50247 * 359.97438 * 15 13 12
35 35 H 0.96700 * 116.99926 * 180.02562 * 19 17 16
36 36 H 1.09007 * 113.61382 * 334.56515 * 20 16 12
37 37 H 1.09000 * 113.61758 * 105.46957 * 20 16 12
38 38 H 1.08999 * 113.53446 * 270.80893 * 21 20 16
39 39 H 1.08995 * 113.66940 * 139.93590 * 21 20 16
40 40 H 1.09000 * 113.61381 * 254.52660 * 22 16 12
41 41 H 1.08993 * 113.61917 * 25.43180 * 22 16 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7092 1.3463 0.0006
5 1 1.8905 2.3964 -1.2124
6 1 1.8905 2.3964 1.2125
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0001
9 6 1.2510 -2.4992 -0.0005
10 6 2.2452 -3.6621 -0.0005
11 6 1.4802 -4.9871 -0.0012
12 7 2.4281 -6.1000 0.1429
13 6 3.2911 -6.2130 -1.0405
14 6 4.7685 -6.5365 -0.8093
15 6 4.3520 -5.1301 -1.2472
16 6 1.7228 -7.3622 0.4026
17 6 2.6598 -8.5223 0.6194
18 8 2.3724 -9.3919 1.4075
19 8 3.8139 -8.5895 -0.0629
20 6 0.5988 -7.6581 -0.6044
21 6 -0.2275 -8.1683 0.5903
22 6 0.6274 -7.2462 1.4755
23 1 -0.4849 0.8401 0.0004
24 1 0.6240 -2.5567 -0.8903
25 1 0.6246 -2.5571 0.8897
26 1 2.8719 -3.6044 0.8895
27 1 2.8718 -3.6043 -0.8906
28 1 0.7755 -5.0002 0.8304
29 1 0.9363 -5.0923 -0.9400
30 1 2.8177 -6.6299 -1.9294
31 1 5.1001 -6.6659 0.2210
32 1 5.2672 -7.1660 -1.5462
33 1 4.5769 -4.8350 -2.2721
34 1 4.4095 -4.3336 -0.5053
35 1 4.3820 -9.3527 0.1098
36 1 0.1848 -6.7646 -1.0717
37 1 0.8519 -8.4355 -1.3253
38 1 -0.0838 -9.2287 0.7977
39 1 -1.2786 -7.8828 0.5492
40 1 0.9035 -7.6915 2.4313
41 1 0.2212 -6.2399 1.5779
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001601065518.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:08:58
Heat of formation + Delta-G solvation = -51.555136 kcal
Electronic energy + Delta-G solvation = -21384.246509 eV
Core-core repulsion = 18265.307231 eV
Total energy + Delta-G solvation = -3118.939278 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 267.162 amu
Computer time = 4.07 seconds
Orbital eigenvalues (eV)
-42.27906 -39.89164 -38.32956 -36.75592 -35.94937 -34.30054 -32.51069 -28.90340
-26.98216 -26.65396 -24.49807 -23.82965 -23.04093 -21.76777 -21.63292 -19.95060
-18.92480 -18.37655 -17.78158 -17.04225 -16.52224 -16.49045 -16.39461 -16.03080
-15.48945 -14.93676 -14.54077 -14.16321 -14.03544 -13.75746 -13.62229 -13.26855
-12.98224 -12.63775 -12.55277 -12.50249 -12.43759 -12.12636 -12.11220 -11.90223
-11.76234 -11.51451 -11.37586 -11.16356 -11.11851 -10.72056 -10.65345 -10.47754
-9.29035 -8.17507 -6.27263 1.08809 1.40951 1.41675 1.54667 2.04154
2.42634 2.73831 3.08872 3.16219 3.31696 3.44255 3.73934 3.97933
4.14966 4.18086 4.23823 4.28166 4.51818 4.56335 4.66883 4.69884
4.78872 4.79813 4.87826 4.95077 4.97418 4.99267 5.08004 5.17698
5.26954 5.31352 5.33944 5.50085 5.55968 5.59555 5.80370 5.90459
5.97058 6.19777 6.31205 6.89829 7.04283 7.41710 8.94567
Molecular weight = 267.16amu
Principal moments of inertia in cm(-1)
A = 0.027028 B = 0.004685 C = 0.004184
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1035.722966 B = 5975.267479 C = 6691.174716
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.933 5.933
2 C 0.000 4.000
3 Si 0.961 3.039
4 H -0.263 1.263
5 H -0.278 1.278
6 H -0.280 1.280
7 C -0.537 4.537
8 H 0.058 0.942
9 C 0.027 3.973
10 C -0.093 4.093
11 C 0.065 3.935
12 N -0.497 5.497
13 C -0.001 4.001
14 C -0.107 4.107
15 C -0.192 4.192
16 C 0.087 3.913
17 C 0.522 3.478
18 O -0.539 6.539
19 O -0.483 6.483
20 C -0.152 4.152
21 C -0.129 4.129
22 C -0.125 4.125
23 H 0.262 0.738
24 H -0.009 1.009
25 H -0.010 1.010
26 H 0.045 0.955
27 H 0.067 0.933
28 H 0.076 0.924
29 H 0.037 0.963
30 H 0.086 0.914
31 H 0.089 0.911
32 H 0.112 0.888
33 H 0.100 0.900
34 H 0.088 0.912
35 H 0.419 0.581
36 H 0.099 0.901
37 H 0.080 0.920
38 H 0.086 0.914
39 H 0.089 0.911
40 H 0.075 0.925
41 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.979 -18.440 -2.531 19.550
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.574 5.574
2 C -0.197 4.197
3 Si 0.786 3.214
4 H -0.187 1.187
5 H -0.204 1.204
6 H -0.205 1.205
7 C -0.575 4.575
8 H 0.076 0.924
9 C -0.011 4.011
10 C -0.131 4.131
11 C -0.062 4.062
12 N -0.221 5.221
13 C -0.109 4.109
14 C -0.144 4.144
15 C -0.229 4.229
16 C -0.005 4.005
17 C 0.364 3.636
18 O -0.429 6.429
19 O -0.295 6.295
20 C -0.191 4.191
21 C -0.166 4.166
22 C -0.163 4.163
23 H 0.071 0.929
24 H 0.010 0.990
25 H 0.008 0.992
26 H 0.064 0.936
27 H 0.085 0.915
28 H 0.094 0.906
29 H 0.055 0.945
30 H 0.104 0.896
31 H 0.107 0.893
32 H 0.130 0.870
33 H 0.118 0.882
34 H 0.106 0.894
35 H 0.280 0.720
36 H 0.117 0.883
37 H 0.099 0.901
38 H 0.105 0.895
39 H 0.108 0.892
40 H 0.094 0.906
41 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges 5.847 -18.146 -1.991 19.168
hybrid contribution -0.153 0.504 -0.400 0.661
sum 5.693 -17.642 -2.391 18.691
Atomic orbital electron populations
1.70101 1.07712 1.27554 1.52042 1.25930 0.95718 1.03161 0.94898
0.85455 0.79152 0.79073 0.77720 1.18658 1.20374 1.20534 1.21697
0.93444 0.92370 1.49955 0.92409 1.18981 0.94406 0.93071 0.94654
1.21640 0.98114 0.92245 1.01063 1.22204 0.94041 0.89666 1.00268
1.61761 1.21216 1.01683 1.37490 1.22294 0.90560 1.05670 0.92425
1.22749 0.93790 0.95615 1.02289 1.23343 1.03133 0.93724 1.02703
1.22171 0.90159 0.87522 1.00650 1.22327 0.80327 0.84843 0.76072
1.90686 1.75467 1.40927 1.35844 1.84890 1.30447 1.50963 1.63219
1.23542 0.95573 1.02819 0.97208 1.22798 0.99766 0.99683 0.94400
1.23230 0.93907 1.01753 0.97394 0.92877 0.99015 0.99197 0.93616
0.91501 0.90579 0.94512 0.89601 0.89300 0.86977 0.88210 0.89398
0.71987 0.88315 0.90091 0.89515 0.89198 0.90649 0.88116
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16
2 C 0.00 0.02 5.46 84.66 0.46 0.49 16
3 Si 0.96 44.40 29.54 68.60 2.03 46.42 16
4 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16
5 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16
6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16
7 C -0.54 -30.57 9.11 25.60 0.23 -30.33 16
8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16
9 C 0.03 1.39 4.97 29.85 0.15 1.53 16
10 C -0.09 -3.80 3.90 30.59 0.12 -3.68 16
11 C 0.06 2.16 4.07 86.30 0.35 2.51 16
12 N -0.50 -14.14 4.68 -823.05 -3.85 -17.99 16
13 C 0.00 -0.03 3.80 44.92 0.17 0.14 16
14 C -0.11 -2.26 7.45 30.62 0.23 -2.03 16
15 C -0.19 -5.04 8.27 30.62 0.25 -4.79 16
16 C 0.09 2.16 1.08 3.30 0.00 2.16 16
17 C 0.52 12.36 7.45 71.23 0.53 12.90 16
18 O -0.54 -15.06 16.11 21.96 0.35 -14.70 16
19 O -0.48 -8.23 8.39 -51.44 -0.43 -8.66 16
20 C -0.15 -3.31 6.64 31.18 0.21 -3.10 16
21 C -0.13 -2.69 7.70 31.18 0.24 -2.45 16
22 C -0.13 -3.12 6.83 31.12 0.21 -2.91 16
23 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16
24 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16
25 H -0.01 -0.59 8.14 -2.38 -0.02 -0.60 16
26 H 0.05 1.93 8.02 -2.39 -0.02 1.91 16
27 H 0.07 2.66 5.23 -2.38 -0.01 2.65 16
28 H 0.08 2.56 5.38 -2.39 -0.01 2.55 16
29 H 0.04 1.21 6.59 -2.39 -0.02 1.19 16
30 H 0.09 2.10 7.88 -2.39 -0.02 2.08 16
31 H 0.09 1.99 7.78 -2.39 -0.02 1.98 16
32 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16
33 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16
34 H 0.09 2.76 6.07 -2.38 -0.01 2.75 16
35 H 0.42 3.34 9.10 -74.06 -0.67 2.67 16
36 H 0.10 2.27 6.12 -2.38 -0.01 2.25 16
37 H 0.08 1.57 8.09 -2.39 -0.02 1.55 16
38 H 0.09 1.83 7.60 -2.39 -0.02 1.81 16
39 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16
40 H 0.07 1.96 7.65 -2.39 -0.02 1.95 16
41 H 0.10 2.64 5.51 -2.39 -0.01 2.63 16
Total: -1.00 -67.46 317.84 1.91 -65.55
By element:
Atomic # 1 Polarization: 15.08 SS G_CDS: 0.36 Total: 15.44 kcal
Atomic # 6 Polarization: -32.73 SS G_CDS: 3.16 Total: -29.57 kcal
Atomic # 7 Polarization: -70.91 SS G_CDS: -3.56 Total: -74.47 kcal
Atomic # 8 Polarization: -23.29 SS G_CDS: -0.08 Total: -23.37 kcal
Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal
Total: -67.46 1.91 -65.55 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001601065518.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.994 kcal
(2) G-P(sol) polarization free energy of solvation -67.455 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.461 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.906 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.550 kcal
(6) G-S(sol) free energy of system = (1) + (5) -51.555 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 4.07 seconds