Wall clock time and date at job start Mon Mar 30 2020 01:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 120.00105 * 2 1 4 4 H 1.48498 * 109.47198 * 270.00111 * 3 2 1 5 5 H 1.48496 * 109.46819 * 30.00230 * 3 2 1 6 6 H 1.48493 * 109.46844 * 150.00219 * 3 2 1 7 7 C 1.37876 * 119.99557 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99885 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00350 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47176 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47030 * 180.02562 * 10 9 7 12 12 C 1.47680 * 111.00096 * 293.95688 * 11 10 9 13 13 C 1.52588 * 111.67547 * 178.79703 * 12 11 10 14 14 C 1.53842 * 111.31093 * 53.67813 * 13 12 11 15 15 H 1.09003 * 109.96682 * 185.08154 * 14 13 12 16 16 C 1.50699 * 110.04013 * 63.81661 * 14 13 12 17 17 O 1.20826 * 120.00115 * 339.83735 * 16 14 13 18 18 O 1.34234 * 119.99706 * 159.82992 * 16 14 13 19 19 C 1.51980 * 106.90104 * 304.42870 * 14 13 12 20 20 H 1.08998 * 110.53814 * 300.89892 * 19 14 13 21 21 C 1.53341 * 115.47506 * 174.44024 * 19 14 13 22 22 C 1.55289 * 102.98456 * 203.57982 * 21 19 14 23 23 C 1.54902 * 106.37150 * 23.98078 * 22 21 19 24 24 C 1.45061 * 110.97033 * 172.87934 * 11 10 9 25 25 H 1.09001 * 109.05654 * 69.99365 * 24 11 10 26 26 H 0.97004 * 119.99711 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47352 * 60.00367 * 9 7 2 28 28 H 1.08998 * 109.47819 * 300.00338 * 9 7 2 29 29 H 1.08999 * 109.46687 * 60.00869 * 10 9 7 30 30 H 1.08992 * 109.47378 * 300.00239 * 10 9 7 31 31 H 1.09004 * 109.04340 * 58.23599 * 12 11 10 32 32 H 1.09003 * 108.98543 * 299.31979 * 12 11 10 33 33 H 1.09003 * 109.11266 * 293.21165 * 13 12 11 34 34 H 1.09000 * 109.06922 * 174.11850 * 13 12 11 35 35 H 0.96707 * 116.99523 * 180.02562 * 18 16 14 36 36 H 1.08999 * 110.71423 * 85.19982 * 21 19 14 37 37 H 1.09001 * 110.86074 * 322.01875 * 21 19 14 38 38 H 1.09007 * 110.07113 * 264.75510 * 22 21 19 39 39 H 1.08999 * 110.07738 * 143.21330 * 22 21 19 40 40 H 1.08999 * 110.26962 * 122.32268 * 23 22 21 41 41 H 1.09005 * 110.26881 * 244.28790 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5107 -4.9343 -0.0012 12 6 0.7608 -5.1130 1.2585 13 6 -0.0319 -6.4168 1.2623 14 6 0.8714 -7.6214 0.9463 15 1 0.2699 -8.5268 0.8658 16 6 1.9081 -7.7871 2.0274 17 8 2.1805 -6.8583 2.7507 18 8 2.5287 -8.9666 2.1870 19 6 1.5492 -7.3288 -0.3822 20 1 0.8065 -7.1817 -1.1662 21 6 2.6037 -8.3508 -0.8237 22 6 3.5022 -7.5304 -1.7887 23 6 3.3287 -6.0439 -1.3890 24 6 2.4151 -6.0559 -0.1691 25 1 3.0136 -6.1689 0.7349 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8896 29 1 2.8717 -3.6044 0.8895 30 1 2.8719 -3.6044 -0.8904 31 1 0.0718 -4.2777 1.3838 32 1 1.4638 -5.1220 2.0915 33 1 -0.8214 -6.3567 0.5131 34 1 -0.4825 -6.5568 2.2448 35 1 3.1858 -9.0247 2.8942 36 1 2.1367 -9.1850 -1.3473 37 1 3.1800 -8.7074 0.0300 38 1 3.1797 -7.6810 -2.8190 39 1 4.5442 -7.8293 -1.6748 40 1 4.2938 -5.6064 -1.1338 41 1 2.8650 -5.4858 -2.2025 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065601.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:17 Heat of formation + Delta-G solvation = -103.431265 kcal Electronic energy + Delta-G solvation = -21690.376261 eV Core-core repulsion = 18569.187465 eV Total energy + Delta-G solvation = -3121.188796 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.24044 -38.91166 -36.32433 -35.48729 -33.93935 -32.68737 -29.56285 -28.69407 -27.45567 -25.50635 -23.79048 -22.35987 -21.31633 -20.48891 -19.63319 -19.23314 -18.01222 -16.51211 -16.41514 -15.92645 -15.33205 -14.71483 -14.45514 -14.16462 -14.07198 -13.71170 -13.35561 -13.03345 -12.78582 -12.56066 -12.20597 -11.80870 -11.71450 -11.56409 -11.23658 -11.04348 -10.90545 -10.88660 -10.63255 -10.57672 -10.50681 -10.34219 -10.19199 -10.01264 -9.64118 -9.20234 -9.04512 -8.27728 -7.59649 -5.94843 -3.96599 2.19797 2.98617 3.35178 3.41076 3.44745 4.32256 4.44733 4.54627 4.61131 4.80441 4.97003 5.17344 5.21116 5.40897 5.41781 5.48659 5.55034 5.62778 5.65297 5.70776 5.85271 5.90163 5.96905 6.04743 6.11122 6.24759 6.28010 6.32238 6.39101 6.42927 6.57733 6.60107 6.76889 7.06064 7.58655 7.66640 7.87200 7.90461 7.97013 8.14937 8.49976 9.10606 9.66622 11.16607 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.027275 B = 0.004927 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.323068 B = 5681.627203 C = 6108.798182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.029 3.971 10 C 0.061 3.939 11 N -0.517 5.517 12 C 0.036 3.964 13 C -0.099 4.099 14 C -0.073 4.073 15 H 0.103 0.897 16 C 0.484 3.516 17 O -0.504 6.504 18 O -0.519 6.519 19 C -0.082 4.082 20 H 0.105 0.895 21 C -0.123 4.123 22 C -0.119 4.119 23 C -0.116 4.116 24 C 0.069 3.931 25 H 0.036 0.964 26 H 0.260 0.740 27 H 0.024 0.976 28 H 0.017 0.983 29 H 0.018 0.982 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.404 0.596 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.343 -20.073 0.401 20.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.009 4.009 10 C -0.066 4.066 11 N -0.241 5.241 12 C -0.091 4.091 13 C -0.137 4.137 14 C -0.092 4.092 15 H 0.121 0.879 16 C 0.326 3.674 17 O -0.391 6.391 18 O -0.331 6.331 19 C -0.101 4.101 20 H 0.123 0.877 21 C -0.161 4.161 22 C -0.157 4.157 23 C -0.154 4.154 24 C -0.041 4.041 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.042 0.958 28 H 0.035 0.965 29 H 0.036 0.964 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.262 0.738 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.630 -19.628 -0.107 19.804 hybrid contribution 1.485 0.954 1.234 2.153 sum 4.115 -18.675 1.127 19.156 Atomic orbital electron populations 1.69977 1.05990 1.26463 1.50891 1.24980 0.94814 0.99090 0.95388 0.86613 0.79840 0.83599 0.78064 1.20667 1.21248 1.19975 1.21205 0.92954 0.91144 1.50570 0.92909 1.19081 0.93970 0.90114 0.97692 1.22331 0.96800 0.88530 0.98894 1.62493 1.25266 1.01934 1.34359 1.22382 0.98383 0.96723 0.91605 1.21560 0.97443 0.92485 1.02189 1.21073 0.94470 1.01453 0.92219 0.87899 1.23620 0.80664 0.79321 0.83789 1.90713 1.62715 1.40486 1.45151 1.84590 1.54232 1.37651 1.56604 1.21950 0.97825 0.95658 0.94698 0.87712 1.22334 0.96925 0.97235 0.99632 1.22435 0.99348 0.94671 0.99231 1.21899 0.98977 0.96276 0.98244 1.22109 0.92917 0.91801 0.97251 0.94637 0.93073 0.95771 0.96516 0.96386 0.92009 0.89617 0.92392 0.89808 0.91337 0.73772 0.91280 0.91017 0.91558 0.92099 0.91999 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.31 13.29 55.43 0.74 -26.58 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 22.09 29.54 -169.99 -5.02 17.06 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.43 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.77 4.90 -27.88 -0.14 0.63 16 10 C 0.06 1.36 4.73 -3.82 -0.02 1.34 16 11 N -0.52 -9.72 4.74 -226.47 -1.07 -10.80 16 12 C 0.04 0.66 4.81 -3.61 -0.02 0.64 16 13 C -0.10 -1.36 5.25 -26.50 -0.14 -1.50 16 14 C -0.07 -0.87 3.00 -91.85 -0.28 -1.14 16 15 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 16 C 0.48 6.18 5.66 36.01 0.20 6.39 16 17 O -0.50 -8.23 13.54 -18.75 -0.25 -8.48 16 18 O -0.52 -4.94 11.98 -39.27 -0.47 -5.41 16 19 C -0.08 -1.02 2.43 -89.68 -0.22 -1.24 16 20 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 21 C -0.12 -1.29 6.31 -25.34 -0.16 -1.45 16 22 C -0.12 -1.29 6.87 -24.51 -0.17 -1.46 16 23 C -0.12 -1.63 5.44 -26.03 -0.14 -1.77 16 24 C 0.07 1.08 1.77 -67.72 -0.12 0.96 16 25 H 0.04 0.62 5.77 -51.93 -0.30 0.32 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.02 0.47 6.51 -51.93 -0.34 0.13 16 29 H 0.02 0.42 8.12 -51.93 -0.42 -0.01 16 30 H 0.06 1.34 7.05 -51.93 -0.37 0.98 16 31 H 0.09 1.72 6.38 -51.93 -0.33 1.39 16 32 H 0.06 1.15 5.60 -51.93 -0.29 0.86 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.40 2.32 9.10 45.56 0.41 2.74 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.76 6.03 -51.93 -0.31 0.45 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.08 1.18 8.03 -51.93 -0.42 0.76 16 LS Contribution 312.10 15.07 4.70 4.70 Total: -1.00 -32.87 312.10 -8.69 -41.56 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -5.71 Total: 0.34 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -1.60 Total: -12.41 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: -0.34 Total: -37.38 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.72 Total: -13.89 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.87 -8.69 -41.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065601.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.868 kcal (2) G-P(sol) polarization free energy of solvation -32.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds