Wall clock time and date at job start Mon Mar 30 2020 01:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 120.00105 * 2 1 4 4 H 1.48498 * 109.47198 * 270.00111 * 3 2 1 5 5 H 1.48496 * 109.46819 * 30.00230 * 3 2 1 6 6 H 1.48493 * 109.46844 * 150.00219 * 3 2 1 7 7 C 1.37876 * 119.99557 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99885 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00350 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47176 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47030 * 180.02562 * 10 9 7 12 12 C 1.47680 * 111.00096 * 293.95688 * 11 10 9 13 13 C 1.52588 * 111.67547 * 178.79703 * 12 11 10 14 14 C 1.53842 * 111.31093 * 53.67813 * 13 12 11 15 15 H 1.09003 * 109.96682 * 185.08154 * 14 13 12 16 16 C 1.50699 * 110.04013 * 63.81661 * 14 13 12 17 17 O 1.20826 * 120.00115 * 339.83735 * 16 14 13 18 18 O 1.34234 * 119.99706 * 159.82992 * 16 14 13 19 19 C 1.51980 * 106.90104 * 304.42870 * 14 13 12 20 20 H 1.08998 * 110.53814 * 300.89892 * 19 14 13 21 21 C 1.53341 * 115.47506 * 174.44024 * 19 14 13 22 22 C 1.55289 * 102.98456 * 203.57982 * 21 19 14 23 23 C 1.54902 * 106.37150 * 23.98078 * 22 21 19 24 24 C 1.45061 * 110.97033 * 172.87934 * 11 10 9 25 25 H 1.09001 * 109.05654 * 69.99365 * 24 11 10 26 26 H 0.97004 * 119.99711 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47352 * 60.00367 * 9 7 2 28 28 H 1.08998 * 109.47819 * 300.00338 * 9 7 2 29 29 H 1.08999 * 109.46687 * 60.00869 * 10 9 7 30 30 H 1.08992 * 109.47378 * 300.00239 * 10 9 7 31 31 H 1.09004 * 109.04340 * 58.23599 * 12 11 10 32 32 H 1.09003 * 108.98543 * 299.31979 * 12 11 10 33 33 H 1.09003 * 109.11266 * 293.21165 * 13 12 11 34 34 H 1.09000 * 109.06922 * 174.11850 * 13 12 11 35 35 H 0.96707 * 116.99523 * 180.02562 * 18 16 14 36 36 H 1.08999 * 110.71423 * 85.19982 * 21 19 14 37 37 H 1.09001 * 110.86074 * 322.01875 * 21 19 14 38 38 H 1.09007 * 110.07113 * 264.75510 * 22 21 19 39 39 H 1.08999 * 110.07738 * 143.21330 * 22 21 19 40 40 H 1.08999 * 110.26962 * 122.32268 * 23 22 21 41 41 H 1.09005 * 110.26881 * 244.28790 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5107 -4.9343 -0.0012 12 6 0.7608 -5.1130 1.2585 13 6 -0.0319 -6.4168 1.2623 14 6 0.8714 -7.6214 0.9463 15 1 0.2699 -8.5268 0.8658 16 6 1.9081 -7.7871 2.0274 17 8 2.1805 -6.8583 2.7507 18 8 2.5287 -8.9666 2.1870 19 6 1.5492 -7.3288 -0.3822 20 1 0.8065 -7.1817 -1.1662 21 6 2.6037 -8.3508 -0.8237 22 6 3.5022 -7.5304 -1.7887 23 6 3.3287 -6.0439 -1.3890 24 6 2.4151 -6.0559 -0.1691 25 1 3.0136 -6.1689 0.7349 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8896 29 1 2.8717 -3.6044 0.8895 30 1 2.8719 -3.6044 -0.8904 31 1 0.0718 -4.2777 1.3838 32 1 1.4638 -5.1220 2.0915 33 1 -0.8214 -6.3567 0.5131 34 1 -0.4825 -6.5568 2.2448 35 1 3.1858 -9.0247 2.8942 36 1 2.1367 -9.1850 -1.3473 37 1 3.1800 -8.7074 0.0300 38 1 3.1797 -7.6810 -2.8190 39 1 4.5442 -7.8293 -1.6748 40 1 4.2938 -5.6064 -1.1338 41 1 2.8650 -5.4858 -2.2025 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601065601.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:16 Heat of formation + Delta-G solvation = -126.258460 kcal Electronic energy + Delta-G solvation = -21691.366123 eV Core-core repulsion = 18569.187465 eV Total energy + Delta-G solvation = -3122.178657 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.31902 -40.02266 -37.31389 -36.87117 -35.35738 -34.57914 -31.47479 -29.84463 -28.58240 -27.14862 -25.31901 -23.81903 -22.45653 -21.98715 -20.72159 -20.52483 -18.97441 -18.57445 -17.54924 -16.96720 -16.76220 -16.43900 -15.95411 -15.59556 -15.27423 -14.85501 -14.55840 -14.37596 -14.34802 -13.92642 -13.65397 -13.34007 -13.05365 -12.85078 -12.79610 -12.54920 -12.47733 -12.16720 -12.04741 -11.95207 -11.73296 -11.63274 -11.45395 -11.32425 -11.25186 -11.11330 -10.87779 -10.54719 -9.17141 -8.21766 -6.33365 1.22225 1.37527 1.39755 1.50665 2.12767 2.38647 3.03356 3.11057 3.36921 3.55230 3.80891 3.96144 4.17610 4.22267 4.26877 4.40995 4.43071 4.52837 4.53965 4.60423 4.63700 4.70501 4.83347 4.86685 4.92961 5.01985 5.10964 5.13982 5.16684 5.20454 5.25157 5.33831 5.43866 5.51399 5.63812 5.71423 5.77407 6.07468 6.30817 6.36844 6.82584 7.03161 7.35404 8.90444 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.027275 B = 0.004927 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.323068 B = 5681.627203 C = 6108.798182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.055 0.945 9 C 0.040 3.960 10 C 0.079 3.921 11 N -0.519 5.519 12 C 0.039 3.961 13 C -0.095 4.095 14 C -0.070 4.070 15 H 0.145 0.855 16 C 0.488 3.512 17 O -0.548 6.548 18 O -0.504 6.504 19 C -0.073 4.073 20 H 0.110 0.890 21 C -0.114 4.114 22 C -0.111 4.111 23 C -0.120 4.120 24 C 0.059 3.941 25 H 0.018 0.982 26 H 0.265 0.735 27 H -0.003 1.003 28 H -0.010 1.010 29 H 0.001 0.999 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.037 0.963 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.422 0.578 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.052 0.948 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.033 -22.185 -0.402 22.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.791 3.209 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.073 0.927 9 C 0.003 3.997 10 C -0.048 4.048 11 N -0.243 5.243 12 C -0.089 4.089 13 C -0.132 4.132 14 C -0.089 4.089 15 H 0.163 0.837 16 C 0.332 3.668 17 O -0.439 6.439 18 O -0.317 6.317 19 C -0.092 4.092 20 H 0.128 0.872 21 C -0.152 4.152 22 C -0.149 4.149 23 C -0.158 4.158 24 C -0.050 4.050 25 H 0.036 0.964 26 H 0.073 0.927 27 H 0.015 0.985 28 H 0.009 0.991 29 H 0.019 0.981 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.283 0.717 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.337 -21.790 -0.911 22.063 hybrid contribution 1.272 1.582 1.517 2.534 sum 4.608 -20.208 0.605 20.736 Atomic orbital electron populations 1.70110 1.07761 1.27815 1.51280 1.25951 0.95784 1.03242 0.94479 0.85426 0.78505 0.78301 0.78679 1.19372 1.20453 1.19111 1.21600 0.93322 0.92469 1.51204 0.92684 1.18874 0.94056 0.91777 0.94988 1.21947 0.95467 0.89297 0.98119 1.62475 1.25684 1.01517 1.34585 1.22332 0.97583 0.98348 0.90611 1.21504 0.97447 0.90899 1.03370 1.21109 0.94381 1.01946 0.91470 0.83724 1.23753 0.80441 0.79339 0.83227 1.90719 1.64114 1.42114 1.46924 1.84529 1.54345 1.35632 1.57228 1.21959 0.97965 0.94115 0.95161 0.87233 1.22328 0.95969 0.97181 0.99705 1.22417 1.00496 0.91813 1.00208 1.21950 0.97910 0.98973 0.96954 1.22293 0.93461 0.92024 0.97247 0.96383 0.92666 0.98496 0.99124 0.98097 0.91682 0.93039 0.94477 0.88597 0.90298 0.71675 0.88320 0.90910 0.90002 0.90825 0.92943 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.38 13.29 21.45 0.28 -58.10 16 2 C 0.00 0.21 5.46 84.65 0.46 0.67 16 3 Si 0.97 45.82 29.54 68.60 2.03 47.84 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 7 C -0.55 -33.00 9.11 25.60 0.23 -32.77 16 8 H 0.05 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.04 2.30 4.90 29.85 0.15 2.45 16 10 C 0.08 3.74 4.73 86.30 0.41 4.15 16 11 N -0.52 -20.35 4.74 -870.42 -4.13 -24.48 16 12 C 0.04 1.48 4.81 86.02 0.41 1.90 16 13 C -0.09 -2.53 5.25 30.74 0.16 -2.37 16 14 C -0.07 -1.48 3.00 -11.59 -0.03 -1.52 16 15 H 0.15 1.97 8.14 -2.39 -0.02 1.95 16 16 C 0.49 11.60 5.66 71.24 0.40 12.00 16 17 O -0.55 -17.99 13.54 21.96 0.30 -17.69 16 18 O -0.50 -8.03 11.98 -51.46 -0.62 -8.64 16 19 C -0.07 -1.63 2.43 -10.18 -0.02 -1.66 16 20 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 21 C -0.11 -1.93 6.31 31.49 0.20 -1.73 16 22 C -0.11 -2.09 6.87 32.03 0.22 -1.87 16 23 C -0.12 -3.30 5.44 31.05 0.17 -3.13 16 24 C 0.06 1.84 1.77 45.90 0.08 1.92 16 25 H 0.02 0.64 5.77 -2.39 -0.01 0.63 16 26 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 27 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 28 H -0.01 -0.58 6.51 -2.39 -0.02 -0.60 16 29 H 0.00 0.04 8.12 -2.39 -0.02 0.02 16 30 H 0.06 2.97 7.05 -2.39 -0.02 2.96 16 31 H 0.05 2.26 6.38 -2.38 -0.02 2.24 16 32 H 0.04 1.58 5.60 -2.39 -0.01 1.56 16 33 H 0.10 2.33 8.14 -2.39 -0.02 2.32 16 34 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.42 3.70 9.10 -74.05 -0.67 3.03 16 36 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.07 1.24 6.03 -2.39 -0.01 1.23 16 38 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.06 1.95 8.03 -2.38 -0.02 1.93 16 Total: -1.00 -74.73 312.10 1.05 -73.68 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 0.35 Total: 9.34 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: 2.84 Total: -21.94 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -3.84 Total: -82.58 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.32 Total: -26.34 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -74.73 1.05 -73.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065601.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.583 kcal (2) G-P(sol) polarization free energy of solvation -74.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds