Wall clock time and date at job start Mon Mar 30 2020 01:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99694 * 2 1 4 4 H 1.48497 * 109.47074 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47201 * 300.00192 * 3 2 1 6 6 H 1.48505 * 109.47052 * 60.00052 * 3 2 1 7 7 C 1.37873 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99654 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00544 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47741 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47302 * 179.97438 * 10 9 7 12 12 C 1.44364 * 110.61173 * 40.22236 * 11 10 9 13 13 C 1.53371 * 108.03550 * 188.05371 * 12 11 10 14 14 C 1.52646 * 107.83860 * 294.09255 * 13 12 11 15 15 H 1.08996 * 108.89615 * 292.64625 * 14 13 12 16 16 C 1.50707 * 108.88888 * 174.16724 * 14 13 12 17 17 O 1.20824 * 120.00079 * 332.80597 * 16 14 13 18 18 O 1.34226 * 119.99887 * 152.79147 * 16 14 13 19 19 C 1.50177 * 112.43749 * 53.41454 * 14 13 12 20 20 H 1.09005 * 106.51215 * 205.64482 * 19 14 13 21 21 C 1.53618 * 112.18868 * 90.01864 * 19 14 13 22 22 C 1.54296 * 104.11055 * 199.45947 * 21 19 14 23 23 C 1.53759 * 105.95599 * 28.56430 * 22 21 19 24 24 C 1.45540 * 110.99919 * 169.99653 * 11 10 9 25 25 H 1.08995 * 109.08081 * 314.95428 * 24 11 10 26 26 H 0.96997 * 120.00280 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47481 * 59.99529 * 9 7 2 28 28 H 1.09006 * 109.46764 * 300.00109 * 9 7 2 29 29 H 1.08998 * 109.47280 * 59.99084 * 10 9 7 30 30 H 1.09006 * 109.46818 * 299.99755 * 10 9 7 31 31 H 1.08997 * 109.67243 * 68.52804 * 12 11 10 32 32 H 1.09010 * 110.04015 * 307.78823 * 12 11 10 33 33 H 1.09002 * 109.78684 * 174.51074 * 13 12 11 34 34 H 1.09000 * 109.78852 * 53.67670 * 13 12 11 35 35 H 0.96703 * 116.99915 * 179.97438 * 18 16 14 36 36 H 1.08999 * 110.54985 * 80.79851 * 21 19 14 37 37 H 1.09004 * 110.50739 * 318.09820 * 21 19 14 38 38 H 1.09000 * 110.16523 * 269.41932 * 22 21 19 39 39 H 1.08997 * 110.16549 * 147.70225 * 22 21 19 40 40 H 1.08998 * 109.92937 * 102.12268 * 23 22 21 41 41 H 1.09005 * 109.92553 * 223.44640 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 7 1.5110 -4.9342 -0.0020 12 6 0.3637 -4.8584 -0.8750 13 6 -0.4677 -6.1320 -0.6783 14 6 0.3611 -7.3131 -1.1767 15 1 0.4779 -7.2313 -2.2573 16 6 -0.3733 -8.5912 -0.8634 17 8 -1.1357 -8.6360 0.0729 18 8 -0.1807 -9.6798 -1.6246 19 6 1.7216 -7.3665 -0.5432 20 1 2.3687 -7.8955 -1.2430 21 6 1.7272 -8.1952 0.7502 22 6 3.0006 -7.7320 1.4883 23 6 3.2417 -6.2797 1.0445 24 6 2.4091 -6.0549 -0.2378 25 1 3.0818 -5.8058 -1.0584 26 1 -0.4850 0.8400 0.0004 27 1 0.6248 -2.5564 -0.8919 28 1 0.6242 -2.5575 0.8881 29 1 2.8715 -3.6046 0.8889 30 1 2.8727 -3.6039 -0.8910 31 1 0.6950 -4.7923 -1.9113 32 1 -0.2384 -3.9845 -0.6256 33 1 -1.3919 -6.0617 -1.2519 34 1 -0.6978 -6.2629 0.3790 35 1 -0.6736 -10.4764 -1.3844 36 1 1.7842 -9.2596 0.5225 37 1 0.8407 -7.9786 1.3464 38 1 3.8475 -8.3570 1.2049 39 1 2.8466 -7.7748 2.5664 40 1 2.9139 -5.5934 1.8254 41 1 4.2998 -6.1270 0.8320 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065603.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:19 Heat of formation + Delta-G solvation = -103.052585 kcal Electronic energy + Delta-G solvation = -21411.641975 eV Core-core repulsion = 18290.469599 eV Total energy + Delta-G solvation = -3121.172375 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.06197 -39.26045 -36.22874 -35.81226 -34.03141 -32.77799 -29.67099 -29.07404 -27.40379 -25.85902 -23.69813 -22.69399 -21.52962 -20.34722 -19.88520 -18.20831 -18.08385 -16.87734 -16.31340 -15.98057 -15.89395 -14.82822 -14.52292 -14.35187 -14.12189 -13.84667 -13.59645 -13.25852 -12.65188 -12.33656 -12.18448 -11.72771 -11.61217 -11.32402 -11.19337 -11.15866 -11.06195 -10.91774 -10.74992 -10.64218 -10.45350 -10.40109 -10.21276 -10.09863 -9.85286 -9.31095 -9.03811 -8.34957 -7.53508 -6.01071 -4.03163 2.16274 2.94211 3.30811 3.38517 3.42299 4.30923 4.46375 4.51761 4.54058 4.68448 4.96758 5.13439 5.24531 5.35290 5.37818 5.53922 5.58844 5.63644 5.68695 5.79405 5.81475 5.92974 5.99577 6.05957 6.06843 6.24488 6.26685 6.35315 6.38879 6.41290 6.53146 6.59353 6.64753 6.95050 7.54078 7.67935 7.82564 7.85669 7.96346 8.04597 8.42863 9.03606 9.60841 11.10318 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.030347 B = 0.004563 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.428878 B = 6134.458510 C = 6750.191209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.018 3.982 10 C 0.069 3.931 11 N -0.552 5.552 12 C 0.065 3.935 13 C -0.106 4.106 14 C -0.064 4.064 15 H 0.096 0.904 16 C 0.486 3.514 17 O -0.509 6.509 18 O -0.520 6.520 19 C -0.073 4.073 20 H 0.068 0.932 21 C -0.124 4.124 22 C -0.117 4.117 23 C -0.117 4.117 24 C 0.110 3.890 25 H 0.037 0.963 26 H 0.260 0.740 27 H 0.022 0.978 28 H 0.026 0.974 29 H 0.062 0.938 30 H 0.019 0.981 31 H 0.024 0.976 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.405 0.595 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.504 -18.348 -2.375 18.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.019 4.019 10 C -0.057 4.057 11 N -0.277 5.277 12 C -0.063 4.063 13 C -0.144 4.144 14 C -0.083 4.083 15 H 0.115 0.885 16 C 0.328 3.672 17 O -0.397 6.397 18 O -0.332 6.332 19 C -0.092 4.092 20 H 0.087 0.913 21 C -0.161 4.161 22 C -0.154 4.154 23 C -0.155 4.155 24 C 0.001 3.999 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.040 0.960 28 H 0.044 0.956 29 H 0.080 0.920 30 H 0.038 0.962 31 H 0.043 0.957 32 H 0.124 0.876 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.263 0.737 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.211 -17.974 -1.809 18.199 hybrid contribution 0.450 0.435 -0.729 0.961 sum 2.660 -17.539 -2.538 17.920 Atomic orbital electron populations 1.69967 1.06009 1.26513 1.50791 1.24980 0.94820 0.99176 0.95287 0.86551 0.80109 0.83850 0.77572 1.19771 1.21071 1.20986 1.21215 0.93044 0.90977 1.50682 0.92717 1.19309 0.94191 0.90610 0.97807 1.22284 0.96945 0.87448 0.99000 1.59604 1.09767 1.03496 1.54881 1.21755 0.92500 0.97987 0.94023 1.21685 0.97082 0.92211 1.03437 1.20420 0.95552 0.89578 1.02777 0.88545 1.23623 0.79429 0.85048 0.79107 1.90710 1.35511 1.84396 1.29034 1.84588 1.67711 1.22979 1.57931 1.20442 0.93657 0.97250 0.97880 0.91344 1.22367 0.99712 0.97946 0.96118 1.22023 0.96868 0.96451 1.00103 1.22362 0.98696 0.96549 0.97879 1.21190 0.92740 0.89434 0.96516 0.94468 0.93036 0.96035 0.95595 0.91969 0.96228 0.95739 0.87608 0.91222 0.89311 0.73690 0.92203 0.90423 0.92293 0.91647 0.89831 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.52 -14.49 9.11 -34.45 -0.31 -14.81 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.02 0.45 3.95 -27.89 -0.11 0.34 16 10 C 0.07 1.42 4.92 -3.83 -0.02 1.41 16 11 N -0.55 -9.73 4.07 -229.68 -0.93 -10.66 16 12 C 0.07 1.11 4.73 -4.99 -0.02 1.09 16 13 C -0.11 -1.55 5.12 -26.72 -0.14 -1.69 16 14 C -0.06 -0.81 2.55 -93.35 -0.24 -1.05 16 15 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 16 C 0.49 5.99 5.74 36.01 0.21 6.20 16 17 O -0.51 -7.67 15.89 -18.75 -0.30 -7.97 16 18 O -0.52 -4.90 13.42 -39.25 -0.53 -5.43 16 19 C -0.07 -0.93 2.32 -92.61 -0.22 -1.14 16 20 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 21 C -0.12 -1.52 5.00 -25.73 -0.13 -1.64 16 22 C -0.12 -1.35 6.79 -25.66 -0.17 -1.52 16 23 C -0.12 -1.57 6.03 -25.53 -0.15 -1.73 16 24 C 0.11 1.61 2.73 -68.55 -0.19 1.43 16 25 H 0.04 0.56 7.78 -51.93 -0.40 0.15 16 26 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 27 H 0.02 0.56 6.23 -51.93 -0.32 0.24 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 1.28 7.38 -51.93 -0.38 0.89 16 30 H 0.02 0.40 7.84 -51.93 -0.41 0.00 16 31 H 0.02 0.41 8.13 -51.93 -0.42 -0.01 16 32 H 0.11 2.08 5.67 -51.92 -0.29 1.78 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.09 1.45 7.63 -51.93 -0.40 1.05 16 35 H 0.40 2.07 9.10 45.56 0.41 2.49 16 36 H 0.06 0.66 7.96 -51.93 -0.41 0.24 16 37 H 0.08 1.11 7.19 -51.93 -0.37 0.73 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 1.27 7.26 -51.93 -0.38 0.90 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 317.15 15.07 4.78 4.78 Total: -1.00 -31.10 317.15 -8.73 -39.83 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.88 Total: 0.30 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -1.59 Total: -11.55 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: -0.20 Total: -36.42 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.82 Total: -13.40 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.10 -8.73 -39.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065603.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.221 kcal (2) G-P(sol) polarization free energy of solvation -31.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds