Wall clock time and date at job start Mon Mar 30 2020 01:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99694 * 2 1 4 4 H 1.48497 * 109.47074 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47201 * 300.00192 * 3 2 1 6 6 H 1.48505 * 109.47052 * 60.00052 * 3 2 1 7 7 C 1.37873 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99654 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00544 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47741 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47302 * 179.97438 * 10 9 7 12 12 C 1.44364 * 110.61173 * 40.22236 * 11 10 9 13 13 C 1.53371 * 108.03550 * 188.05371 * 12 11 10 14 14 C 1.52646 * 107.83860 * 294.09255 * 13 12 11 15 15 H 1.08996 * 108.89615 * 292.64625 * 14 13 12 16 16 C 1.50707 * 108.88888 * 174.16724 * 14 13 12 17 17 O 1.20824 * 120.00079 * 332.80597 * 16 14 13 18 18 O 1.34226 * 119.99887 * 152.79147 * 16 14 13 19 19 C 1.50177 * 112.43749 * 53.41454 * 14 13 12 20 20 H 1.09005 * 106.51215 * 205.64482 * 19 14 13 21 21 C 1.53618 * 112.18868 * 90.01864 * 19 14 13 22 22 C 1.54296 * 104.11055 * 199.45947 * 21 19 14 23 23 C 1.53759 * 105.95599 * 28.56430 * 22 21 19 24 24 C 1.45540 * 110.99919 * 169.99653 * 11 10 9 25 25 H 1.08995 * 109.08081 * 314.95428 * 24 11 10 26 26 H 0.96997 * 120.00280 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47481 * 59.99529 * 9 7 2 28 28 H 1.09006 * 109.46764 * 300.00109 * 9 7 2 29 29 H 1.08998 * 109.47280 * 59.99084 * 10 9 7 30 30 H 1.09006 * 109.46818 * 299.99755 * 10 9 7 31 31 H 1.08997 * 109.67243 * 68.52804 * 12 11 10 32 32 H 1.09010 * 110.04015 * 307.78823 * 12 11 10 33 33 H 1.09002 * 109.78684 * 174.51074 * 13 12 11 34 34 H 1.09000 * 109.78852 * 53.67670 * 13 12 11 35 35 H 0.96703 * 116.99915 * 179.97438 * 18 16 14 36 36 H 1.08999 * 110.54985 * 80.79851 * 21 19 14 37 37 H 1.09004 * 110.50739 * 318.09820 * 21 19 14 38 38 H 1.09000 * 110.16523 * 269.41932 * 22 21 19 39 39 H 1.08997 * 110.16549 * 147.70225 * 22 21 19 40 40 H 1.08998 * 109.92937 * 102.12268 * 23 22 21 41 41 H 1.09005 * 109.92553 * 223.44640 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 7 1.5110 -4.9342 -0.0020 12 6 0.3637 -4.8584 -0.8750 13 6 -0.4677 -6.1320 -0.6783 14 6 0.3611 -7.3131 -1.1767 15 1 0.4779 -7.2313 -2.2573 16 6 -0.3733 -8.5912 -0.8634 17 8 -1.1357 -8.6360 0.0729 18 8 -0.1807 -9.6798 -1.6246 19 6 1.7216 -7.3665 -0.5432 20 1 2.3687 -7.8955 -1.2430 21 6 1.7272 -8.1952 0.7502 22 6 3.0006 -7.7320 1.4883 23 6 3.2417 -6.2797 1.0445 24 6 2.4091 -6.0549 -0.2378 25 1 3.0818 -5.8058 -1.0584 26 1 -0.4850 0.8400 0.0004 27 1 0.6248 -2.5564 -0.8919 28 1 0.6242 -2.5575 0.8881 29 1 2.8715 -3.6046 0.8889 30 1 2.8727 -3.6039 -0.8910 31 1 0.6950 -4.7923 -1.9113 32 1 -0.2384 -3.9845 -0.6256 33 1 -1.3919 -6.0617 -1.2519 34 1 -0.6978 -6.2629 0.3790 35 1 -0.6736 -10.4764 -1.3844 36 1 1.7842 -9.2596 0.5225 37 1 0.8407 -7.9786 1.3464 38 1 3.8475 -8.3570 1.2049 39 1 2.8466 -7.7748 2.5664 40 1 2.9139 -5.5934 1.8254 41 1 4.2998 -6.1270 0.8320 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601065603.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:19 Heat of formation + Delta-G solvation = -123.149867 kcal Electronic energy + Delta-G solvation = -21412.513458 eV Core-core repulsion = 18290.469599 eV Total energy + Delta-G solvation = -3122.043859 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.10695 -40.36629 -37.21273 -37.09059 -35.36540 -34.66081 -31.47640 -30.20686 -28.57941 -27.35195 -25.40248 -24.01740 -22.51854 -21.79106 -21.18189 -19.36268 -19.01997 -18.64011 -17.59314 -17.18256 -16.93367 -16.47262 -16.11834 -15.55473 -15.43104 -15.22764 -14.65768 -14.55078 -14.19005 -13.96003 -13.39261 -13.17714 -12.96101 -12.84826 -12.54523 -12.43226 -12.39439 -12.28678 -12.09107 -11.99096 -11.87506 -11.69092 -11.49889 -11.30663 -11.15328 -11.14253 -10.98706 -10.52384 -8.96704 -8.18867 -6.29527 1.21021 1.40903 1.41513 1.54478 2.07227 2.41292 3.02955 3.14993 3.44280 3.50761 3.64215 3.94594 4.06658 4.26859 4.31152 4.41318 4.48102 4.53979 4.56455 4.60925 4.64722 4.72598 4.82129 4.86535 4.93563 5.01969 5.03742 5.11076 5.12638 5.21888 5.25411 5.36186 5.48429 5.51756 5.62536 5.70396 5.81395 6.14706 6.38490 6.60830 6.87534 7.02463 7.39607 8.93165 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.030347 B = 0.004563 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.428878 B = 6134.458510 C = 6750.191209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.964 3.036 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.059 0.941 9 C 0.028 3.972 10 C 0.087 3.913 11 N -0.560 5.560 12 C 0.068 3.932 13 C -0.097 4.097 14 C -0.065 4.065 15 H 0.117 0.883 16 C 0.497 3.503 17 O -0.542 6.542 18 O -0.509 6.509 19 C -0.074 4.074 20 H 0.095 0.905 21 C -0.120 4.120 22 C -0.110 4.110 23 C -0.117 4.117 24 C 0.105 3.895 25 H 0.041 0.959 26 H 0.263 0.737 27 H 0.005 0.995 28 H -0.008 1.008 29 H 0.061 0.939 30 H 0.021 0.979 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.426 0.574 36 H 0.079 0.921 37 H 0.051 0.949 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.193 -19.879 -3.313 20.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.077 0.923 9 C -0.009 4.009 10 C -0.040 4.040 11 N -0.285 5.285 12 C -0.060 4.060 13 C -0.135 4.135 14 C -0.084 4.084 15 H 0.135 0.865 16 C 0.340 3.660 17 O -0.432 6.432 18 O -0.322 6.322 19 C -0.093 4.093 20 H 0.113 0.887 21 C -0.157 4.157 22 C -0.148 4.148 23 C -0.155 4.155 24 C -0.004 4.004 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.023 0.977 28 H 0.010 0.990 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.288 0.712 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.909 -19.549 -2.760 20.126 hybrid contribution -0.115 0.858 -0.450 0.976 sum 3.794 -18.690 -3.209 19.340 Atomic orbital electron populations 1.70102 1.07753 1.27652 1.51625 1.25913 0.95699 1.03173 0.94701 0.85419 0.79125 0.78897 0.77717 1.18565 1.20389 1.20521 1.21651 0.93509 0.92288 1.50600 0.92264 1.19123 0.94359 0.92144 0.95312 1.21912 0.95621 0.87491 0.98944 1.59551 1.10175 1.03198 1.55566 1.21602 0.92310 0.98023 0.94026 1.21505 0.97518 0.92072 1.02410 1.20365 0.95150 0.89051 1.03855 0.86493 1.23326 0.78590 0.85470 0.78564 1.90717 1.36974 1.84976 1.30512 1.84521 1.67686 1.23192 1.56844 1.20454 0.93931 0.96118 0.98775 0.88672 1.22326 0.98896 0.98961 0.95553 1.22005 0.97432 0.95252 1.00114 1.22359 0.99164 0.97502 0.96523 1.21369 0.92543 0.89114 0.97327 0.94074 0.92814 0.97714 0.99007 0.92086 0.96054 0.95210 0.91293 0.90197 0.91498 0.71198 0.90288 0.93002 0.89800 0.91606 0.92315 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16 2 C 0.00 0.18 5.46 84.65 0.46 0.64 16 3 Si 0.96 44.28 29.54 68.60 2.03 46.30 16 4 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.54 -30.85 9.11 25.60 0.23 -30.61 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.03 1.47 3.95 29.84 0.12 1.59 16 10 C 0.09 3.67 4.92 86.30 0.42 4.10 16 11 N -0.56 -20.09 4.07 -880.58 -3.58 -23.67 16 12 C 0.07 2.41 4.73 86.90 0.41 2.83 16 13 C -0.10 -2.86 5.12 30.60 0.16 -2.71 16 14 C -0.06 -1.52 2.55 -12.57 -0.03 -1.55 16 15 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 16 C 0.50 11.17 5.74 71.24 0.41 11.58 16 17 O -0.54 -15.77 15.89 21.97 0.35 -15.43 16 18 O -0.51 -7.80 13.42 -51.37 -0.69 -8.49 16 19 C -0.07 -1.69 2.32 -12.08 -0.03 -1.72 16 20 H 0.09 1.75 8.08 -2.38 -0.02 1.73 16 21 C -0.12 -2.66 5.00 31.24 0.16 -2.51 16 22 C -0.11 -2.28 6.79 31.29 0.21 -2.07 16 23 C -0.12 -3.00 6.03 31.37 0.19 -2.81 16 24 C 0.10 2.93 2.73 45.11 0.12 3.05 16 25 H 0.04 1.14 7.78 -2.39 -0.02 1.12 16 26 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 27 H 0.00 0.26 6.23 -2.39 -0.01 0.24 16 28 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 29 H 0.06 2.56 7.38 -2.39 -0.02 2.54 16 30 H 0.02 0.89 7.84 -2.38 -0.02 0.87 16 31 H 0.03 1.01 8.13 -2.39 -0.02 0.99 16 32 H 0.07 2.92 5.67 -2.38 -0.01 2.91 16 33 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.07 2.27 7.63 -2.39 -0.02 2.25 16 35 H 0.43 2.87 9.10 -74.06 -0.67 2.19 16 36 H 0.08 1.46 7.96 -2.39 -0.02 1.44 16 37 H 0.05 1.44 7.19 -2.38 -0.02 1.42 16 38 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.06 1.79 7.26 -2.39 -0.02 1.78 16 41 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 Total: -1.00 -68.62 317.15 1.57 -67.05 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 0.34 Total: 10.86 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: 2.84 Total: -20.20 kcal Atomic # 7 Polarization: -76.81 SS G_CDS: -3.30 Total: -80.10 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.34 Total: -23.91 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -68.62 1.57 -67.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065603.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.102 kcal (2) G-P(sol) polarization free energy of solvation -68.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds