Wall clock time and date at job start Mon Mar 30 2020 01:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00271 * 2 1 4 4 H 1.48499 * 109.47407 * 240.00441 * 3 2 1 5 5 H 1.48497 * 109.46672 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46856 * 120.00215 * 3 2 1 7 7 C 1.38815 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00146 * 186.05437 * 7 2 1 9 9 N 1.36936 * 119.99841 * 6.06064 * 7 2 1 10 10 C 1.46500 * 120.00026 * 186.17604 * 9 7 2 11 11 C 1.53008 * 109.47230 * 82.89110 * 10 9 7 12 12 C 1.52999 * 115.56174 * 212.12163 * 11 10 9 13 13 C 1.50701 * 109.47028 * 41.80391 * 12 11 10 14 14 O 1.20825 * 120.00256 * 11.74569 * 13 12 11 15 15 O 1.34234 * 119.99943 * 191.74792 * 13 12 11 16 16 C 1.52995 * 117.49863 * 66.43314 * 11 10 9 17 17 C 1.52997 * 117.49527 * 357.81194 * 11 10 9 18 18 C 1.46493 * 120.00100 * 6.17193 * 9 7 2 19 19 C 1.54270 * 110.03227 * 183.87668 * 18 9 7 20 20 C 1.54894 * 104.19428 * 217.10805 * 19 18 9 21 21 C 1.54879 * 102.75029 * 37.94411 * 20 19 18 22 22 C 1.53874 * 110.03346 * 66.71274 * 18 9 7 23 23 H 0.96994 * 120.00102 * 4.98422 * 1 2 3 24 24 H 1.09000 * 109.46952 * 322.89324 * 10 9 7 25 25 H 1.09000 * 109.47770 * 202.89341 * 10 9 7 26 26 H 1.09004 * 109.47083 * 161.79749 * 12 11 10 27 27 H 1.08992 * 109.47051 * 281.80029 * 12 11 10 28 28 H 0.96698 * 117.00084 * 179.97438 * 15 13 12 29 29 H 1.08994 * 117.50158 * 145.02010 * 16 11 10 30 30 H 1.09002 * 117.49555 * 359.97438 * 16 11 10 31 31 H 1.09001 * 117.50101 * 359.97438 * 17 11 10 32 32 H 1.09002 * 117.51659 * 214.97016 * 17 11 10 33 33 H 1.08995 * 110.02489 * 305.32085 * 18 9 7 34 34 H 1.08998 * 110.48542 * 335.78552 * 19 18 9 35 35 H 1.08998 * 110.48633 * 98.43052 * 19 18 9 36 36 H 1.08999 * 110.75434 * 279.62157 * 20 19 18 37 37 H 1.09001 * 110.75408 * 156.25930 * 20 19 18 38 38 H 1.09004 * 110.48691 * 203.38136 * 21 20 19 39 39 H 1.09000 * 110.60315 * 80.78949 * 21 20 19 40 40 H 1.09000 * 110.03718 * 238.56995 * 22 18 9 41 41 H 1.09003 * 110.03209 * 359.97438 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6962 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0856 -1.2049 0.0981 9 7 1.3312 -2.3847 -0.1263 10 6 2.0448 -3.6570 0.0085 11 6 2.1826 -4.0100 1.4909 12 6 3.4472 -4.7829 1.8707 13 6 4.6291 -4.2043 1.1362 14 8 4.5229 -3.1495 0.5566 15 8 5.7998 -4.8609 1.1258 16 6 0.9010 -4.3292 2.2631 17 6 1.6337 -3.0089 2.5094 18 6 -0.1087 -2.3775 -0.3955 19 6 -0.6534 -3.8208 -0.3962 20 6 -1.7206 -3.8235 -1.5189 21 6 -1.0800 -2.9199 -2.6014 22 6 -0.3800 -1.8047 -1.7976 23 1 -0.4850 0.8368 -0.0730 24 1 3.0355 -3.5669 -0.4371 25 1 1.4871 -4.4424 -0.5017 26 1 3.6128 -4.7032 2.9452 27 1 3.3278 -5.8314 1.5983 28 1 6.5290 -4.4506 0.6410 29 1 0.9587 -5.0897 3.0418 30 1 -0.0404 -4.2872 1.7152 31 1 1.1749 -2.0986 2.1234 32 1 2.1733 -2.9006 3.4503 33 1 -0.6262 -1.7828 0.3572 34 1 0.1429 -4.5290 -0.6251 35 1 -1.1103 -4.0566 0.5650 36 1 -2.6572 -3.3949 -1.1625 37 1 -1.8768 -4.8324 -1.9008 38 1 -1.8482 -2.4982 -3.2497 39 1 -0.3528 -3.4811 -3.1883 40 1 -1.0297 -0.9324 -1.7255 41 1 0.5597 -1.5316 -2.2777 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608184124.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:52 Heat of formation + Delta-G solvation = -31.694550 kcal Electronic energy + Delta-G solvation = -22341.491376 eV Core-core repulsion = 19223.413318 eV Total energy + Delta-G solvation = -3118.078058 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.37199 -39.91288 -37.94967 -36.79569 -35.31695 -32.73079 -30.80034 -29.29693 -28.47343 -27.56453 -24.32024 -23.06252 -22.82312 -21.19595 -20.56163 -19.33911 -18.80323 -18.51844 -17.20536 -17.01661 -16.68086 -16.58109 -15.92638 -15.57460 -15.20930 -14.52056 -14.46375 -13.95738 -13.76933 -13.42508 -13.17134 -12.90323 -12.83175 -12.67665 -12.41406 -12.15659 -12.01012 -11.85917 -11.72262 -11.57784 -11.50030 -11.33999 -11.20608 -11.06457 -10.88636 -10.63552 -10.27074 -10.08786 -8.60263 -7.42049 -4.94092 1.43269 1.44834 1.45502 1.51350 2.27498 2.62344 3.20891 3.52796 3.73240 3.96656 4.12827 4.17427 4.22560 4.31538 4.40130 4.44785 4.64776 4.70564 4.83530 4.89975 4.92086 5.02574 5.10059 5.12506 5.17024 5.27698 5.31924 5.34687 5.43963 5.48684 5.54765 5.66558 5.75919 5.79011 5.85822 5.93562 6.17660 6.32171 6.64213 7.21218 7.46437 8.21659 8.53103 9.41074 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.014286 B = 0.009598 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.554273 B = 2916.632962 C = 4066.465083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.063 4.063 3 Si 0.941 3.059 4 H -0.296 1.296 5 H -0.298 1.298 6 H -0.291 1.291 7 C -0.197 4.197 8 H 0.064 0.936 9 N -0.594 5.594 10 C 0.156 3.844 11 C -0.138 4.138 12 C -0.064 4.064 13 C 0.468 3.532 14 O -0.527 6.527 15 O -0.518 6.518 16 C -0.161 4.161 17 C -0.172 4.172 18 C 0.201 3.799 19 C -0.149 4.149 20 C -0.109 4.109 21 C -0.127 4.127 22 C -0.094 4.094 23 H 0.234 0.766 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.119 0.881 27 H 0.131 0.869 28 H 0.421 0.579 29 H 0.112 0.888 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.080 0.920 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.038 0.962 41 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.043 -14.252 2.558 14.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.255 4.255 3 Si 0.774 3.226 4 H -0.224 1.224 5 H -0.224 1.224 6 H -0.218 1.218 7 C -0.328 4.328 8 H 0.081 0.919 9 N -0.314 5.314 10 C 0.030 3.970 11 C -0.140 4.140 12 C -0.102 4.102 13 C 0.312 3.688 14 O -0.416 6.416 15 O -0.332 6.332 16 C -0.197 4.197 17 C -0.209 4.209 18 C 0.096 3.904 19 C -0.186 4.186 20 C -0.147 4.147 21 C -0.165 4.165 22 C -0.134 4.134 23 H 0.044 0.956 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.137 0.863 27 H 0.149 0.851 28 H 0.281 0.719 29 H 0.131 0.869 30 H 0.114 0.886 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 2.616 -13.980 2.673 14.472 hybrid contribution 1.137 2.183 -0.519 2.515 sum 3.752 -11.797 2.154 12.566 Atomic orbital electron populations 1.70241 1.04766 1.23276 1.59666 1.25117 0.96141 0.98946 1.05273 0.85700 0.77415 0.82391 0.77108 1.22350 1.22444 1.21829 1.19378 0.90816 0.84864 1.37752 0.91853 1.44254 1.04876 1.00789 1.81515 1.20919 0.96319 0.87801 0.91918 1.22047 0.93290 1.02509 0.96191 1.20876 0.86710 1.01583 1.01025 1.23939 0.84403 0.82428 0.78058 1.90820 1.83635 1.24387 1.42784 1.84487 1.22315 1.54502 1.71858 1.23295 0.95535 0.98440 1.02462 1.22895 1.04522 0.95105 0.98403 1.21115 0.82706 0.91473 0.95107 1.23282 0.98624 0.98425 0.98286 1.22352 0.97615 0.99354 0.95355 1.22453 0.98848 0.97529 0.97644 1.22422 0.97121 0.96517 0.97293 0.95569 0.93127 0.91531 0.86271 0.85076 0.71887 0.86949 0.88611 0.90288 0.90214 0.91905 0.90285 0.91634 0.92079 0.90165 0.92545 0.92882 0.94308 0.96934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.83 7.74 21.65 0.17 -53.66 16 2 C -0.06 -3.59 5.07 84.86 0.43 -3.16 16 3 Si 0.94 48.55 29.56 68.60 2.03 50.58 16 4 H -0.30 -15.31 7.11 99.48 0.71 -14.60 16 5 H -0.30 -15.38 7.11 99.48 0.71 -14.68 16 6 H -0.29 -14.93 7.11 99.48 0.71 -14.23 16 7 C -0.20 -11.00 7.82 84.03 0.66 -10.34 16 8 H 0.06 3.74 6.73 -2.91 -0.02 3.72 16 9 N -0.59 -28.73 1.48 -674.02 -1.00 -29.73 16 10 C 0.16 6.25 4.86 86.38 0.42 6.66 16 11 C -0.14 -4.55 2.10 -52.18 -0.11 -4.66 16 12 C -0.06 -1.58 5.93 29.85 0.18 -1.40 16 13 C 0.47 13.54 7.78 71.24 0.55 14.09 16 14 O -0.53 -20.94 13.14 21.97 0.29 -20.66 16 15 O -0.52 -10.99 13.42 -51.46 -0.69 -11.68 16 16 C -0.16 -4.81 9.83 30.59 0.30 -4.51 16 17 C -0.17 -6.55 9.19 30.59 0.28 -6.27 16 18 C 0.20 9.37 2.78 45.72 0.13 9.50 16 19 C -0.15 -5.32 4.66 31.67 0.15 -5.17 16 20 C -0.11 -3.46 6.91 31.88 0.22 -3.24 16 21 C -0.13 -4.64 6.83 31.67 0.22 -4.43 16 22 C -0.09 -4.46 4.99 31.32 0.16 -4.30 16 23 H 0.23 13.65 8.32 -92.71 -0.77 12.88 16 24 H 0.05 2.22 4.86 -2.39 -0.01 2.20 16 25 H 0.07 2.43 4.95 -2.39 -0.01 2.42 16 26 H 0.12 2.45 7.97 -2.39 -0.02 2.43 16 27 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.42 5.96 9.10 -74.06 -0.67 5.29 16 29 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.10 3.08 4.27 -2.39 -0.01 3.07 16 31 H 0.08 3.93 5.99 -2.39 -0.01 3.92 16 32 H 0.08 2.75 8.10 -2.39 -0.02 2.73 16 33 H 0.06 3.47 6.05 -2.39 -0.01 3.46 16 34 H 0.08 2.69 4.74 -2.39 -0.01 2.68 16 35 H 0.07 2.20 6.00 -2.39 -0.01 2.19 16 36 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.04 2.01 6.97 -2.39 -0.02 2.00 16 41 H 0.01 0.64 7.56 -2.39 -0.02 0.63 16 Total: -1.00 -68.52 305.88 4.75 -63.77 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.38 Total: 18.60 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 3.58 Total: -17.22 kcal Atomic # 7 Polarization: -82.56 SS G_CDS: -0.83 Total: -83.39 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.40 Total: -32.34 kcal Atomic # 14 Polarization: 48.55 SS G_CDS: 2.03 Total: 50.58 kcal Total: -68.52 4.75 -63.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184124.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.079 kcal (2) G-P(sol) polarization free energy of solvation -68.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds