Wall clock time and date at job start Mon Mar 30 2020 01:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00300 * 2 1 4 4 H 1.48495 * 109.47688 * 270.00602 * 3 2 1 5 5 H 1.48503 * 109.46827 * 30.00393 * 3 2 1 6 6 H 1.48504 * 109.47251 * 149.99704 * 3 2 1 7 7 C 1.37876 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00370 * 179.97438 * 7 2 1 10 10 N 1.46905 * 109.47370 * 185.41655 * 9 7 2 11 11 C 1.46843 * 111.08371 * 52.16990 * 10 9 7 12 12 C 1.53038 * 109.61101 * 185.81847 * 11 10 9 13 13 C 1.53140 * 109.27750 * 300.90647 * 12 11 10 14 14 H 1.08993 * 109.58827 * 297.64806 * 13 12 11 15 15 C 1.50693 * 109.52601 * 177.46967 * 13 12 11 16 16 O 1.20833 * 120.00197 * 240.35481 * 15 13 12 17 17 O 1.34229 * 120.00215 * 60.35627 * 15 13 12 18 18 C 1.53088 * 109.12309 * 57.57784 * 13 12 11 19 19 H 1.09003 * 109.39573 * 62.07973 * 18 13 12 20 20 C 1.52795 * 109.54409 * 182.01879 * 18 13 12 21 21 C 1.52993 * 109.58426 * 60.33457 * 20 18 13 22 22 C 1.53012 * 109.42735 * 59.92086 * 21 20 18 23 23 C 1.52993 * 109.41851 * 299.85577 * 22 21 20 24 24 C 1.46905 * 110.99793 * 176.38005 * 10 9 7 25 25 H 1.09006 * 109.48132 * 54.04689 * 24 10 9 26 26 H 0.96999 * 119.99937 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.46628 * 65.41881 * 9 7 2 28 28 H 1.08997 * 109.47399 * 305.42112 * 9 7 2 29 29 H 1.08992 * 109.41662 * 65.78189 * 11 10 9 30 30 H 1.09005 * 109.43643 * 305.85663 * 11 10 9 31 31 H 1.09000 * 109.50038 * 180.97108 * 12 11 10 32 32 H 1.09001 * 109.50547 * 60.84503 * 12 11 10 33 33 H 0.96697 * 117.00294 * 179.97438 * 17 15 13 34 34 H 1.09003 * 109.47327 * 300.28308 * 20 18 13 35 35 H 1.08999 * 109.41045 * 180.34313 * 20 18 13 36 36 H 1.09001 * 109.47744 * 299.93488 * 21 20 18 37 37 H 1.09002 * 109.47958 * 179.91170 * 21 20 18 38 38 H 1.08998 * 109.48505 * 179.87563 * 22 21 20 39 39 H 1.09002 * 109.48799 * 59.84208 * 22 21 20 40 40 H 1.08993 * 109.46108 * 300.11172 * 23 22 21 41 41 H 1.08991 * 109.46285 * 180.13714 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0011 -2.5729 -0.1324 11 6 3.3845 -3.2452 -1.2831 12 6 3.8045 -4.7167 -1.3040 13 6 5.3306 -4.8056 -1.3939 14 1 5.6687 -4.3535 -2.3262 15 6 5.7543 -6.2512 -1.3522 16 8 6.4757 -6.6441 -0.4661 17 8 5.3302 -7.1024 -2.2995 18 6 5.9473 -4.0573 -0.2092 19 1 5.6369 -4.5335 0.7209 20 6 7.4709 -4.0971 -0.3166 21 6 7.9111 -3.4239 -1.6180 22 6 7.4364 -1.9693 -1.6244 23 6 5.9102 -1.9318 -1.5237 24 6 5.4670 -2.6046 -0.2229 25 1 5.8953 -2.0720 0.6263 26 1 -0.4850 0.8400 0.0004 27 1 3.8751 -0.7668 0.9334 28 1 3.8746 -0.5984 -0.8385 29 1 3.7113 -2.7612 -2.2033 30 1 2.2994 -3.1785 -1.2034 31 1 3.3597 -5.2098 -2.1683 32 1 3.4647 -5.2051 -0.3907 33 1 5.6286 -8.0196 -2.2310 34 1 7.8086 -5.1335 -0.3117 35 1 7.9077 -3.5691 0.5310 36 1 7.4752 -3.9522 -2.4660 37 1 8.9982 -3.4519 -1.6921 38 1 7.7514 -1.4881 -2.5503 39 1 7.8698 -1.4416 -0.7747 40 1 5.4772 -2.4613 -2.3722 41 1 5.5712 -0.8960 -1.5306 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608184348.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:34 Heat of formation + Delta-G solvation = -121.394376 kcal Electronic energy + Delta-G solvation = -22074.230731 eV Core-core repulsion = 18952.262996 eV Total energy + Delta-G solvation = -3121.967735 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -42.22487 -40.42562 -37.34172 -36.76310 -35.11350 -34.21607 -31.35250 -30.88521 -29.26826 -26.79202 -24.09338 -23.82444 -23.33082 -22.41291 -21.19953 -19.06478 -18.95679 -18.91892 -17.68432 -16.93676 -16.67340 -16.52349 -15.81297 -15.59324 -15.17830 -14.84165 -14.72973 -14.34941 -14.08160 -13.92584 -13.75490 -13.46630 -13.23303 -12.95350 -12.72725 -12.61499 -12.46420 -12.27367 -12.17017 -11.95326 -11.77577 -11.69240 -11.38276 -11.32187 -11.11534 -10.92095 -10.78186 -10.65143 -8.88158 -8.27189 -6.30172 1.21731 1.33810 1.36475 1.47085 2.15110 2.34769 3.06720 3.19850 3.48089 3.74273 3.86134 3.96590 4.13614 4.22135 4.27172 4.36692 4.40933 4.49154 4.58242 4.60480 4.69687 4.73453 4.78504 4.90199 4.91991 5.05664 5.11509 5.13995 5.19766 5.24700 5.29878 5.34075 5.40826 5.45218 5.52792 5.58883 5.71565 6.03141 6.40847 6.71851 6.77424 7.05285 7.33918 8.88686 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.025503 B = 0.006184 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.663127 B = 4526.518660 C = 5269.669535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.011 3.989 3 Si 0.942 3.058 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.251 1.251 7 C -0.519 4.519 8 H 0.045 0.955 9 C 0.173 3.827 10 N -0.540 5.540 11 C 0.064 3.936 12 C -0.098 4.098 13 C -0.074 4.074 14 H 0.122 0.878 15 C 0.494 3.506 16 O -0.536 6.536 17 O -0.510 6.510 18 C -0.053 4.053 19 H 0.063 0.937 20 C -0.118 4.118 21 C -0.116 4.116 22 C -0.108 4.108 23 C -0.155 4.155 24 C 0.089 3.911 25 H 0.074 0.926 26 H 0.266 0.734 27 H 0.022 0.978 28 H -0.004 1.004 29 H 0.035 0.965 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.426 0.574 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.886 -9.359 -6.606 20.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.186 4.186 3 Si 0.766 3.234 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.175 1.175 7 C -0.557 4.557 8 H 0.063 0.937 9 C 0.046 3.954 10 N -0.263 5.263 11 C -0.063 4.063 12 C -0.136 4.136 13 C -0.093 4.093 14 H 0.140 0.860 15 C 0.337 3.663 16 O -0.426 6.426 17 O -0.324 6.324 18 C -0.072 4.072 19 H 0.082 0.918 20 C -0.156 4.156 21 C -0.153 4.153 22 C -0.146 4.146 23 C -0.194 4.194 24 C -0.019 4.019 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.040 0.960 28 H 0.013 0.987 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.112 0.888 32 H 0.079 0.921 33 H 0.288 0.712 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 16.641 -9.221 -5.963 19.938 hybrid contribution -0.122 0.734 -0.326 0.813 sum 16.519 -8.487 -6.289 19.607 Atomic orbital electron populations 1.70038 1.08045 1.28010 1.52620 1.25787 0.95514 1.02901 0.94435 0.85785 0.79485 0.79033 0.79084 1.19200 1.20946 1.17525 1.21349 0.91109 0.93399 1.49836 0.93687 1.19895 0.93932 0.86553 0.95045 1.62006 1.05164 1.17541 1.41616 1.21923 0.99765 0.93126 0.91528 1.21552 0.92458 0.96462 1.03115 1.21223 0.97561 0.87857 1.02658 0.86001 1.23414 0.75781 0.89219 0.77840 1.90652 1.36275 1.79035 1.36644 1.84520 1.70747 1.26202 1.50893 1.20858 0.95980 0.93587 0.96748 0.91809 1.21674 0.93191 1.02033 0.98707 1.21582 1.01307 0.95221 0.97207 1.21457 0.93534 0.97209 1.02436 1.22243 0.97849 1.00458 0.98858 1.21723 0.87381 0.95495 0.97334 0.90767 0.92502 0.96037 0.98685 0.94687 0.91930 0.88831 0.92101 0.71225 0.90455 0.91464 0.91998 0.90316 0.90864 0.91734 0.91328 0.93210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.65 13.96 21.45 0.30 -58.35 16 2 C 0.01 0.64 5.47 84.66 0.46 1.10 16 3 Si 0.94 43.79 27.36 68.60 1.88 45.67 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.25 -10.98 6.70 99.48 0.67 -10.31 16 7 C -0.52 -29.46 8.83 25.60 0.23 -29.23 16 8 H 0.04 2.83 6.62 -2.91 -0.02 2.81 16 9 C 0.17 8.15 3.76 85.56 0.32 8.47 16 10 N -0.54 -21.76 4.70 -875.54 -4.12 -25.87 16 11 C 0.06 2.40 4.87 86.33 0.42 2.82 16 12 C -0.10 -2.86 5.31 30.65 0.16 -2.69 16 13 C -0.07 -1.87 1.62 -11.47 -0.02 -1.89 16 14 H 0.12 2.76 4.85 -2.39 -0.01 2.74 16 15 C 0.49 11.66 7.34 71.23 0.52 12.19 16 16 O -0.54 -15.06 14.56 21.94 0.32 -14.74 16 17 O -0.51 -8.96 13.36 -51.41 -0.69 -9.65 16 18 C -0.05 -1.46 1.74 -10.83 -0.02 -1.48 16 19 H 0.06 2.05 8.04 -2.39 -0.02 2.03 16 20 C -0.12 -2.73 5.15 30.52 0.16 -2.57 16 21 C -0.12 -2.23 5.65 30.60 0.17 -2.05 16 22 C -0.11 -2.29 5.92 30.60 0.18 -2.11 16 23 C -0.16 -4.33 4.26 30.59 0.13 -4.20 16 24 C 0.09 2.85 2.22 44.92 0.10 2.95 16 25 H 0.07 2.44 8.12 -2.38 -0.02 2.42 16 26 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 27 H 0.02 1.04 7.57 -2.38 -0.02 1.02 16 28 H 0.00 -0.20 5.43 -2.39 -0.01 -0.22 16 29 H 0.04 1.25 6.17 -2.39 -0.01 1.23 16 30 H 0.06 2.80 5.92 -2.38 -0.01 2.78 16 31 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.43 3.60 9.10 -74.06 -0.67 2.93 16 34 H 0.08 1.90 5.71 -2.39 -0.01 1.88 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.06 1.14 6.41 -2.39 -0.02 1.13 16 37 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.07 1.87 4.79 -2.39 -0.01 1.86 16 41 H 0.05 1.57 6.48 -2.39 -0.02 1.56 16 Total: -1.00 -67.83 299.39 0.85 -66.98 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.33 Total: 14.67 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: 2.82 Total: -18.71 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -3.82 Total: -84.23 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.37 Total: -24.38 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.88 Total: 45.67 kcal Total: -67.83 0.85 -66.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184348.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.414 kcal (2) G-P(sol) polarization free energy of solvation -67.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds