Wall clock time and date at job start Mon Mar 30 2020 01:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 N 1.46904 * 109.47195 * 180.27796 * 9 7 2 11 11 C 1.46864 * 110.99834 * 66.04900 * 10 9 7 12 12 C 1.53025 * 109.59464 * 174.29797 * 11 10 9 13 13 C 1.53141 * 109.32717 * 59.04951 * 12 11 10 14 14 H 1.09006 * 109.53254 * 182.45246 * 13 12 11 15 15 C 1.50694 * 109.53696 * 62.29686 * 13 12 11 16 16 O 1.20829 * 119.99854 * 239.99931 * 15 13 12 17 17 O 1.34223 * 120.00264 * 59.99347 * 15 13 12 18 18 C 1.53087 * 109.09029 * 302.40800 * 13 12 11 19 19 H 1.08996 * 109.49665 * 297.86417 * 18 13 12 20 20 C 1.52965 * 109.59613 * 177.64258 * 18 13 12 21 21 C 1.53033 * 109.39637 * 180.02562 * 20 18 13 22 22 C 1.52984 * 109.52360 * 59.93932 * 21 20 18 23 23 C 1.53016 * 109.54080 * 300.15149 * 22 21 20 24 24 C 1.46806 * 111.00038 * 301.92436 * 10 9 7 25 25 H 1.09000 * 109.44428 * 65.92229 * 24 10 9 26 26 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 28 28 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 29 29 H 1.09002 * 109.45676 * 294.33404 * 11 10 9 30 30 H 1.09000 * 109.45463 * 54.28203 * 11 10 9 31 31 H 1.08999 * 109.49455 * 179.00905 * 12 11 10 32 32 H 1.09000 * 109.49033 * 299.06682 * 12 11 10 33 33 H 0.96698 * 117.00058 * 180.02562 * 17 15 13 34 34 H 1.08999 * 109.49143 * 300.04092 * 20 18 13 35 35 H 1.09003 * 109.48537 * 60.09180 * 20 18 13 36 36 H 1.09004 * 109.46128 * 299.92482 * 21 20 18 37 37 H 1.08997 * 109.45409 * 179.97438 * 21 20 18 38 38 H 1.09000 * 109.45524 * 180.12776 * 22 21 20 39 39 H 1.09007 * 109.46071 * 60.17603 * 22 21 20 40 40 H 1.09003 * 109.48199 * 299.95386 * 23 22 21 41 41 H 1.08995 * 109.49612 * 179.91639 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 7 2.2058 -3.6156 0.0103 11 6 2.9710 -3.6483 1.2634 12 6 3.8505 -4.9001 1.2951 13 6 4.8005 -4.8827 0.0941 14 1 5.3986 -5.7940 0.0892 15 6 5.7092 -3.6841 0.1877 16 8 5.7055 -2.8532 -0.6895 17 8 6.5226 -3.5396 1.2455 18 6 3.9775 -4.8018 -1.1942 19 1 3.3467 -5.6866 -1.2790 20 6 4.9167 -4.7244 -2.3990 21 6 4.0895 -4.6431 -3.6839 22 6 3.2047 -3.3957 -3.6442 23 6 2.2680 -3.4709 -2.4366 24 6 3.0984 -3.5497 -1.1534 25 1 3.7305 -2.6650 -1.0762 26 1 -0.4850 0.8400 0.0004 27 1 0.6245 -2.5529 0.8956 28 1 0.6244 -2.5609 -0.8844 29 1 3.6005 -2.7608 1.3277 30 1 2.2829 -3.6671 2.1085 31 1 4.4308 -4.9137 2.2177 32 1 3.2206 -5.7885 1.2483 33 1 7.0868 -2.7544 1.2614 34 1 5.5452 -3.8379 -2.3140 35 1 5.5453 -5.6145 -2.4278 36 1 3.4624 -5.5307 -3.7689 37 1 4.7579 -4.5875 -4.5431 38 1 2.6143 -3.3401 -4.5588 39 1 3.8319 -2.5080 -3.5627 40 1 1.6397 -4.3578 -2.5184 41 1 1.6390 -2.5812 -2.4082 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608184352.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:37 Heat of formation + Delta-G solvation = -103.978663 kcal Electronic energy + Delta-G solvation = -22644.933267 eV Core-core repulsion = 19523.720734 eV Total energy + Delta-G solvation = -3121.212533 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.89920 -38.53568 -35.93201 -35.45740 -34.00764 -32.10510 -29.65614 -29.12934 -27.01342 -24.79806 -22.80562 -22.43868 -22.20347 -20.12152 -19.32994 -19.19533 -17.65039 -16.50523 -15.72449 -15.41964 -15.13815 -14.77754 -14.34232 -13.96589 -13.71329 -13.33280 -13.04899 -12.79123 -12.64565 -12.38310 -11.85878 -11.61148 -11.44644 -11.35201 -11.22336 -11.00772 -10.93205 -10.64577 -10.53513 -10.39456 -10.25583 -10.13655 -9.93523 -9.65266 -9.46971 -9.34869 -9.06355 -8.37289 -7.06270 -5.97933 -4.06000 2.50053 3.28530 3.29667 3.36821 3.42499 4.45124 4.78689 4.94454 5.00330 5.21044 5.31047 5.33829 5.46073 5.53683 5.70188 5.74664 5.84493 6.04039 6.06293 6.07449 6.12548 6.14695 6.17784 6.24310 6.43184 6.51233 6.57114 6.61761 6.68943 6.77732 6.83376 6.88432 7.11495 7.27089 7.37792 7.60960 7.96207 8.12852 8.19645 8.35125 8.39751 9.05095 9.60680 11.06627 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.017212 B = 0.008456 C = 0.007454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.372373 B = 3310.322619 C = 3755.405267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.065 3.935 3 Si 0.883 3.117 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.541 4.541 8 H 0.056 0.944 9 C 0.186 3.814 10 N -0.540 5.540 11 C 0.059 3.941 12 C -0.109 4.109 13 C -0.074 4.074 14 H 0.099 0.901 15 C 0.479 3.521 16 O -0.495 6.495 17 O -0.522 6.522 18 C -0.065 4.065 19 H 0.083 0.917 20 C -0.130 4.130 21 C -0.112 4.112 22 C -0.116 4.116 23 C -0.107 4.107 24 C 0.089 3.911 25 H 0.073 0.927 26 H 0.260 0.740 27 H 0.027 0.973 28 H 0.038 0.962 29 H 0.032 0.968 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.404 0.596 34 H 0.089 0.911 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.225 -10.714 -1.276 14.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.137 4.137 3 Si 0.711 3.289 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.580 4.580 8 H 0.074 0.926 9 C 0.060 3.940 10 N -0.264 5.264 11 C -0.070 4.070 12 C -0.147 4.147 13 C -0.093 4.093 14 H 0.117 0.883 15 C 0.321 3.679 16 O -0.382 6.382 17 O -0.334 6.334 18 C -0.084 4.084 19 H 0.101 0.899 20 C -0.168 4.168 21 C -0.149 4.149 22 C -0.154 4.154 23 C -0.145 4.145 24 C -0.019 4.019 25 H 0.091 0.909 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.262 0.738 34 H 0.107 0.893 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.526 -11.151 -1.555 14.748 hybrid contribution 1.283 2.363 0.139 2.693 sum 10.810 -8.787 -1.417 14.002 Atomic orbital electron populations 1.69949 1.05896 1.26537 1.50702 1.24923 0.94701 0.98952 0.95128 0.86667 0.80330 0.84272 0.77587 1.19881 1.20947 1.21075 1.21780 0.93346 0.92028 1.50844 0.92561 1.19782 0.90838 0.85423 0.97922 1.62474 1.17061 1.46553 1.00285 1.21885 0.96017 0.94741 0.94309 1.21683 0.96859 1.00777 0.95379 1.21199 0.94942 0.93802 0.99331 0.88305 1.23638 0.78176 0.87767 0.78286 1.90643 1.65289 1.43113 1.39183 1.84528 1.52456 1.49697 1.46697 1.21170 0.95671 1.00597 0.90983 0.89882 1.21919 0.98179 1.02490 0.94223 1.21463 0.98106 0.98467 0.96891 1.21505 0.98000 0.97793 0.98124 1.21536 0.97587 1.02542 0.92827 1.21583 0.93415 0.96034 0.90870 0.90916 0.92998 0.95488 0.94450 0.94997 0.91220 0.91153 0.90091 0.73810 0.89313 0.93266 0.92595 0.92918 0.92767 0.92077 0.92766 0.90173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 3 Si 0.88 22.06 29.54 -169.99 -5.02 17.03 16 4 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.54 -15.01 7.58 -34.44 -0.26 -15.27 16 8 H 0.06 1.62 5.83 -52.49 -0.31 1.31 16 9 C 0.19 4.76 4.58 -4.97 -0.02 4.74 16 10 N -0.54 -11.48 4.70 -228.11 -1.07 -12.56 16 11 C 0.06 1.14 4.93 -3.83 -0.02 1.12 16 12 C -0.11 -1.60 5.55 -26.65 -0.15 -1.75 16 13 C -0.07 -1.06 2.70 -91.66 -0.25 -1.30 16 14 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 15 C 0.48 7.56 5.95 36.00 0.21 7.77 16 16 O -0.50 -9.36 12.12 -18.75 -0.23 -9.58 16 17 O -0.52 -6.75 13.29 -39.24 -0.52 -7.27 16 18 C -0.07 -1.03 1.89 -90.57 -0.17 -1.21 16 19 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 20 C -0.13 -1.91 4.89 -26.73 -0.13 -2.04 16 21 C -0.11 -1.58 5.92 -26.72 -0.16 -1.74 16 22 C -0.12 -1.92 5.92 -26.73 -0.16 -2.08 16 23 C -0.11 -2.07 4.80 -26.70 -0.13 -2.20 16 24 C 0.09 1.77 0.99 -67.72 -0.07 1.70 16 25 H 0.07 1.70 4.14 -51.93 -0.21 1.48 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.03 0.74 8.06 -51.93 -0.42 0.33 16 28 H 0.04 1.02 6.34 -51.93 -0.33 0.69 16 29 H 0.03 0.69 6.20 -51.93 -0.32 0.37 16 30 H 0.07 1.34 8.06 -51.93 -0.42 0.92 16 31 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 32 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.40 3.72 9.10 45.56 0.41 4.14 16 34 H 0.09 1.49 5.33 -51.93 -0.28 1.21 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.08 1.81 6.25 -51.93 -0.32 1.49 16 LS Contribution 304.38 15.07 4.59 4.59 Total: -1.00 -31.11 304.38 -8.47 -39.58 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -5.56 Total: 4.32 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -1.39 Total: -10.49 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: -0.34 Total: -38.17 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.75 Total: -16.85 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.11 -8.47 -39.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184352.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.401 kcal (2) G-P(sol) polarization free energy of solvation -31.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds