Wall clock time and date at job start Mon Mar 30 2020 01:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 N 1.46904 * 109.47195 * 180.27796 * 9 7 2 11 11 C 1.46864 * 110.99834 * 66.04900 * 10 9 7 12 12 C 1.53025 * 109.59464 * 174.29797 * 11 10 9 13 13 C 1.53141 * 109.32717 * 59.04951 * 12 11 10 14 14 H 1.09006 * 109.53254 * 182.45246 * 13 12 11 15 15 C 1.50694 * 109.53696 * 62.29686 * 13 12 11 16 16 O 1.20829 * 119.99854 * 239.99931 * 15 13 12 17 17 O 1.34223 * 120.00264 * 59.99347 * 15 13 12 18 18 C 1.53087 * 109.09029 * 302.40800 * 13 12 11 19 19 H 1.08996 * 109.49665 * 297.86417 * 18 13 12 20 20 C 1.52965 * 109.59613 * 177.64258 * 18 13 12 21 21 C 1.53033 * 109.39637 * 180.02562 * 20 18 13 22 22 C 1.52984 * 109.52360 * 59.93932 * 21 20 18 23 23 C 1.53016 * 109.54080 * 300.15149 * 22 21 20 24 24 C 1.46806 * 111.00038 * 301.92436 * 10 9 7 25 25 H 1.09000 * 109.44428 * 65.92229 * 24 10 9 26 26 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 28 28 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 29 29 H 1.09002 * 109.45676 * 294.33404 * 11 10 9 30 30 H 1.09000 * 109.45463 * 54.28203 * 11 10 9 31 31 H 1.08999 * 109.49455 * 179.00905 * 12 11 10 32 32 H 1.09000 * 109.49033 * 299.06682 * 12 11 10 33 33 H 0.96698 * 117.00058 * 180.02562 * 17 15 13 34 34 H 1.08999 * 109.49143 * 300.04092 * 20 18 13 35 35 H 1.09003 * 109.48537 * 60.09180 * 20 18 13 36 36 H 1.09004 * 109.46128 * 299.92482 * 21 20 18 37 37 H 1.08997 * 109.45409 * 179.97438 * 21 20 18 38 38 H 1.09000 * 109.45524 * 180.12776 * 22 21 20 39 39 H 1.09007 * 109.46071 * 60.17603 * 22 21 20 40 40 H 1.09003 * 109.48199 * 299.95386 * 23 22 21 41 41 H 1.08995 * 109.49612 * 179.91639 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 7 2.2058 -3.6156 0.0103 11 6 2.9710 -3.6483 1.2634 12 6 3.8505 -4.9001 1.2951 13 6 4.8005 -4.8827 0.0941 14 1 5.3986 -5.7940 0.0892 15 6 5.7092 -3.6841 0.1877 16 8 5.7055 -2.8532 -0.6895 17 8 6.5226 -3.5396 1.2455 18 6 3.9775 -4.8018 -1.1942 19 1 3.3467 -5.6866 -1.2790 20 6 4.9167 -4.7244 -2.3990 21 6 4.0895 -4.6431 -3.6839 22 6 3.2047 -3.3957 -3.6442 23 6 2.2680 -3.4709 -2.4366 24 6 3.0984 -3.5497 -1.1534 25 1 3.7305 -2.6650 -1.0762 26 1 -0.4850 0.8400 0.0004 27 1 0.6245 -2.5529 0.8956 28 1 0.6244 -2.5609 -0.8844 29 1 3.6005 -2.7608 1.3277 30 1 2.2829 -3.6671 2.1085 31 1 4.4308 -4.9137 2.2177 32 1 3.2206 -5.7885 1.2483 33 1 7.0868 -2.7544 1.2614 34 1 5.5452 -3.8379 -2.3140 35 1 5.5453 -5.6145 -2.4278 36 1 3.4624 -5.5307 -3.7689 37 1 4.7579 -4.5875 -4.5431 38 1 2.6143 -3.3401 -4.5588 39 1 3.8319 -2.5080 -3.5627 40 1 1.6397 -4.3578 -2.5184 41 1 1.6390 -2.5812 -2.4082 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608184352.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:36 Heat of formation + Delta-G solvation = -125.645116 kcal Electronic energy + Delta-G solvation = -22645.872795 eV Core-core repulsion = 19523.720734 eV Total energy + Delta-G solvation = -3122.152061 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.18352 -39.88112 -37.27360 -36.76905 -35.60535 -34.09530 -31.00109 -30.55977 -28.88941 -26.44549 -24.56079 -23.74187 -23.53869 -21.65641 -20.78971 -20.46308 -18.86661 -18.48988 -16.97388 -16.88738 -16.83632 -16.37585 -15.94346 -15.38295 -15.16755 -14.68553 -14.53336 -14.33373 -14.15660 -13.90130 -13.35254 -13.11946 -13.04825 -12.79755 -12.69487 -12.63858 -12.54476 -12.25823 -12.10019 -11.94842 -11.82604 -11.69255 -11.60932 -11.48308 -10.81434 -10.70556 -10.65631 -10.49459 -8.93604 -8.16301 -6.34832 1.26290 1.28472 1.31978 1.40019 2.23715 2.32219 3.06386 3.34853 3.61487 3.77437 3.97796 4.10708 4.23740 4.31940 4.42023 4.48017 4.60115 4.65084 4.72922 4.76425 4.79121 4.86959 4.94132 5.01853 5.10774 5.14076 5.24398 5.28583 5.30256 5.35376 5.42624 5.44406 5.47165 5.58360 5.59088 5.76233 5.91805 6.10410 6.30176 6.65168 6.87218 7.09255 7.35342 8.84368 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.017212 B = 0.008456 C = 0.007454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.372373 B = 3310.322619 C = 3755.405267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.015 3.985 3 Si 0.945 3.055 4 H -0.278 1.278 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.041 0.959 9 C 0.201 3.799 10 N -0.534 5.534 11 C 0.057 3.943 12 C -0.097 4.097 13 C -0.074 4.074 14 H 0.146 0.854 15 C 0.476 3.524 16 O -0.535 6.535 17 O -0.514 6.514 18 C -0.061 4.061 19 H 0.100 0.900 20 C -0.127 4.127 21 C -0.106 4.106 22 C -0.113 4.113 23 C -0.105 4.105 24 C 0.090 3.910 25 H 0.035 0.965 26 H 0.264 0.736 27 H 0.000 1.000 28 H 0.014 0.986 29 H 0.000 1.000 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.419 0.581 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.036 0.964 40 H 0.064 0.936 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.153 -12.933 -1.354 17.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.185 4.185 3 Si 0.771 3.229 4 H -0.203 1.203 5 H -0.202 1.202 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.060 0.940 9 C 0.074 3.926 10 N -0.258 5.258 11 C -0.072 4.072 12 C -0.134 4.134 13 C -0.093 4.093 14 H 0.163 0.837 15 C 0.320 3.680 16 O -0.424 6.424 17 O -0.327 6.327 18 C -0.079 4.079 19 H 0.118 0.882 20 C -0.165 4.165 21 C -0.144 4.144 22 C -0.151 4.151 23 C -0.143 4.143 24 C -0.018 4.018 25 H 0.053 0.947 26 H 0.073 0.927 27 H 0.018 0.982 28 H 0.032 0.968 29 H 0.018 0.982 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.121 0.879 33 H 0.280 0.720 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.083 0.917 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 11.478 -13.378 -1.612 17.701 hybrid contribution 0.681 3.082 0.195 3.162 sum 12.159 -10.296 -1.417 15.996 Atomic orbital electron populations 1.70045 1.07118 1.27534 1.51579 1.25677 0.95562 1.02254 0.94968 0.85700 0.78624 0.80424 0.78127 1.20333 1.20195 1.19826 1.21880 0.92630 0.93268 1.50263 0.94031 1.19403 0.91295 0.86538 0.95330 1.62464 1.17473 1.43768 1.02076 1.21979 0.95905 0.96371 0.92955 1.21627 0.96480 0.98485 0.96825 1.21321 0.94886 0.95054 0.97990 0.83669 1.24009 0.78182 0.87721 0.78063 1.90658 1.66516 1.44503 1.40769 1.84477 1.52206 1.50596 1.45407 1.21147 0.95581 0.98380 0.92817 0.88160 1.21887 0.97942 1.03051 0.93615 1.21451 0.98061 0.97254 0.97597 1.21473 0.97755 0.98655 0.97207 1.21478 0.97787 1.00598 0.94443 1.21591 0.92980 0.97242 0.89977 0.94719 0.92672 0.98156 0.96797 0.98188 0.91971 0.88803 0.87886 0.72031 0.91641 0.89729 0.90694 0.90894 0.91422 0.94516 0.91727 0.94981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.42 13.29 21.45 0.28 -56.13 16 2 C 0.01 0.86 5.46 84.65 0.46 1.32 16 3 Si 0.95 46.66 29.54 68.60 2.03 48.69 16 4 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 5 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 6 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 7 C -0.54 -31.59 7.58 25.60 0.19 -31.39 16 8 H 0.04 2.52 5.83 -2.91 -0.02 2.50 16 9 C 0.20 10.91 4.58 85.56 0.39 11.30 16 10 N -0.53 -23.28 4.70 -875.61 -4.12 -27.40 16 11 C 0.06 2.19 4.93 86.32 0.43 2.61 16 12 C -0.10 -2.54 5.55 30.65 0.17 -2.37 16 13 C -0.07 -1.86 2.70 -11.47 -0.03 -1.89 16 14 H 0.15 2.46 8.14 -2.38 -0.02 2.44 16 15 C 0.48 14.22 5.95 71.23 0.42 14.65 16 16 O -0.53 -20.24 12.12 21.96 0.27 -19.97 16 17 O -0.51 -12.12 13.29 -51.35 -0.68 -12.81 16 18 C -0.06 -1.76 1.89 -10.76 -0.02 -1.78 16 19 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 20 C -0.13 -3.35 4.89 30.59 0.15 -3.20 16 21 C -0.11 -2.69 5.92 30.60 0.18 -2.51 16 22 C -0.11 -3.72 5.92 30.59 0.18 -3.54 16 23 C -0.11 -4.19 4.80 30.62 0.15 -4.04 16 24 C 0.09 3.62 0.99 44.96 0.04 3.67 16 25 H 0.03 1.69 4.14 -2.39 -0.01 1.68 16 26 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 27 H 0.00 0.02 8.06 -2.39 -0.02 0.00 16 28 H 0.01 0.82 6.34 -2.38 -0.02 0.80 16 29 H 0.00 -0.01 6.20 -2.39 -0.01 -0.02 16 30 H 0.06 2.44 8.06 -2.39 -0.02 2.42 16 31 H 0.09 2.09 8.07 -2.39 -0.02 2.07 16 32 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.42 7.05 9.10 -74.06 -0.67 6.38 16 34 H 0.07 2.10 5.33 -2.39 -0.01 2.09 16 35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 37 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.03 1.54 6.25 -2.39 -0.01 1.53 16 Total: -1.00 -71.73 304.38 0.85 -70.88 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.36 Total: 13.92 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: 2.72 Total: -17.18 kcal Atomic # 7 Polarization: -79.70 SS G_CDS: -3.83 Total: -83.53 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -0.42 Total: -32.78 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -71.73 0.85 -70.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184352.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.766 kcal (2) G-P(sol) polarization free energy of solvation -71.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds